NO05G00490.1, NO05G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00490.1
Unique NameNO05G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1060
Alignment locationchr5:175303..176362 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:175303..176362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00490.1 vs.
Match: EWM28329.1 (o-phosphoseryl-trna selenium transferase [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 2.500e-76
Identity = 164/257 (63.81%), Postives = 187/257 (72.76%), Query Frame = 0 
Query:    1 MDPNDPSLATLCAQLGVSNTYVTQGFEAGIRKRHALYKQLVAHRRLPDQGWDDETIEGVLHDLAMMDSNNFLGNVGVGEREARIFSSLVRRRHFGLGHGMGRSGDINEPQPKAAGSSLLVRLTNLLALDAVRLAGLTRMQDCVVLPLATGMAMTMTLLTLRQDAEKKEEEEEEEEEEEEEEGKAAEKTSTLRSA--SSLAPLLLPYPRPH--------------------YVIFPRIDQKSCLKAIVTAGLTPLLLP 236
            MD ND +LA  CA LGV  TYVTQG EAG+RKRH  +++LV+HRRLP  GWDD TIEGVLHDLAMMDSNNFLGNVGVGEREAR++SSLVRRRH+GLGHGMGRSGDI EPQPKAAGSSLLV+LTNLLALDAVR AGLTRMQDCVVLPLATGMA+T+TLLTLR ++                   A+  ++ +  A  +S     LP P+P                     YV+FPRIDQKSCLK+IVTAGL PL+LP
Sbjct:    1 MDANDATLAANCAGLGVPATYVTQGLEAGVRKRHGYFRRLVSHRRLPPDGWDDATIEGVLHDLAMMDSNNFLGNVGVGEREARVYSSLVRRRHYGLGHGMGRSGDIMEPQPKAAGSSLLVKLTNLLALDAVRAAGLTRMQDCVVLPLATGMAVTVTLLTLRHESAVSTPTPAPAPTPSSSIASASSVSTKMSGAIPTSTPSPGLPRPKPFLPPLPPSLPPSLPSSLPAKVYVVFPRIDQKSCLKSIVTAGLRPLILP 257
The following BLAST results are available for this feature:
BLAST of NO05G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28329.12.500e-7663.81o-phosphoseryl-trna selenium transferase [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00490NO05G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00490.1NO05G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00490.1.cds1NO05G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00490.1 ID=NO05G00490.1|Name=NO05G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp
AGGTACTAAAATGGACCCCAACGATCCCTCTCTCGCCACACTCTGCGCCC
AGCTCGGTGTTTCCAATACCTATGTGACGCAAGGATTCGAAGCCGGGATC
CGGAAACGCCATGCCTTATATAAACAACTGGTCGCGCACCGGCGCTTGCC
CGACCAAGGCTGGGACGACGAGACAATTGAGGGAGTCCTGCACGACTTGG
CCATGATGGATAGCAACAACTTTCTCGGCAACGTCGGCGTCGGGGAGAGA
GAAGCCCGGATTTTTTCTTCCTTGGTGCGACGACGGCATTTTGGCCTAGG
ACACGGGATGGGGAGGTCGGGTGATATCAATGAGCCACAGCCCAAGGCAG
CAGGATCGTCGTTGCTGGTAAGATTAACCAACCTTCTGGCATTAGACGCA
GTGCGTCTAGCGGGTTTGACACGGATGCAGGACTGCGTGGTCTTGCCGTT
GGCCACGGGAATGGCAATGACCATGACGCTATTGACCTTGCGGCAGGACG
CCGAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAG
GAGGGGAAAGCAGCAGAAAAGACGTCGACGTTACGTTCTGCATCTTCGTT
AGCACCTTTACTCCTGCCTTATCCTCGCCCTCACTACGTCATCTTTCCCC
GAATCGACCAAAAATCCTGCCTTAAAGCCATCGTCACCGCCGGCCTCACG
CCCCTCCTCCTCCCCCCATCCTCTCCCCAACCACCGACGAACTCCAAACC
AACCTACCCCTCCTCCTCTCCCTCCTGCAAGACCACCCAGCAAAGACTAA
TATCCTGGCTATACTCTCCACTACCTCATGTTTCGCTCCTCGTGCCCCTG
ATAACATTGTTGAAATCGCCCGGCTAGCCTCTGAATTTAATATCTCCCAC
ATAATAAACAACGCCTACGGCCTACAATGCTCTAAAACGACGCACCAAAT
CAACGAGGCATGTAGAGTAGGAAGAGTAGATGCCGTTGTACAGAGTACGG
ATAAAAATTTTCTAGTCCCCGTGGGGGGTTCTGTGGTGGTGTCGCCAAGA
GGAAGGGGGG
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protein sequence of NO05G00490.1

>NO05G00490.1-protein ID=NO05G00490.1-protein|Name=NO05G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MDPNDPSLATLCAQLGVSNTYVTQGFEAGIRKRHALYKQLVAHRRLPDQG
WDDETIEGVLHDLAMMDSNNFLGNVGVGEREARIFSSLVRRRHFGLGHGM
GRSGDINEPQPKAAGSSLLVRLTNLLALDAVRLAGLTRMQDCVVLPLATG
MAMTMTLLTLRQDAEKKEEEEEEEEEEEEEEGKAAEKTSTLRSASSLAPL
LLPYPRPHYVIFPRIDQKSCLKAIVTAGLTPLLLPPSSPQPPTNSKPTYP
SSSPSCKTTQQRLISWLYSPLPHVSLLVPLITLLKSPG*
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mRNA from alignment at chr5:175303..176362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00490.1 ID=NO05G00490.1|Name=NO05G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp|location=Sequence derived from alignment at chr5:175303..176362- (Nannochloropsis oceanica)
AGGTACTAAAATGGACCCCAACGATCCCTCTCTCGCCACACTCTGCGCCC
AGCTCGGTGTTTCCAATACCTATGTGACGCAAGGATTCGAAGCCGGGATC
CGGAAACGCCATGCCTTATATAAACAACTGGTCGCGCACCGGCGCTTGCC
CGACCAAGGCTGGGACGACGAGACAATTGAGGGAGTCCTGCACGACTTGG
CCATGATGGATAGCAACAACTTTCTCGGCAACGTCGGCGTCGGGGAGAGA
GAAGCCCGGATTTTTTCTTCCTTGGTGCGACGACGGCATTTTGGCCTAGG
ACACGGGATGGGGAGGTCGGGTGATATCAATGAGCCACAGCCCAAGGCAG
CAGGATCGTCGTTGCTGGTAAGATTAACCAACCTTCTGGCATTAGACGCA
GTGCGTCTAGCGGGTTTGACACGGATGCAGGACTGCGTGGTCTTGCCGTT
GGCCACGGGAATGGCAATGACCATGACGCTATTGACCTTGCGGCAGGACG
CCGAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAG
GAGGGGAAAGCAGCAGAAAAGACGTCGACGTTACGTTCTGCATCTTCGTT
AGCACCTTTACTCCTGCCTTATCCTCGCCCTCACTACGTCATCTTTCCCC
GAATCGACCAAAAATCCTGCCTTAAAGCCATCGTCACCGCCGGCCTCACG
CCCCTCCTCCTCCCCCCATCCTCTCCCCAACCACCGACGAACTCCAAACC
AACCTACCCCTCCTCCTCTCCCTCCTGCAAGACCACCCAGCAAAGACTAA
TATCCTGGCTATACTCTCCACTACCTCATGTTTCGCTCCTCGTGCCCCTG
ATAACATTGTTGAAATCGCCCGGCTAGCCTCTGAATTTAATATCTCCCAC
ATAATAAACAACGCCTACGGCCTACAATGCTCTAAAACGACGCACCAAAT
CAACGAGGCATGTAGAGTAGGAAGAGTAGATGCCGTTGTACAGAGTACGG
ATAAAAATTTTCTAGTCCCCGTGGGGGGTTCTGTGGTGGTGTCGCCAAGA
GGAAGGGGGG
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Coding sequence (CDS) from alignment at chr5:175303..176362-

>NO05G00490.1 ID=NO05G00490.1|Name=NO05G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr5:175303..176362- (Nannochloropsis oceanica)
ATGGACCCCAACGATCCCTCTCTCGCCACACTCTGCGCCCAGCTCGGTGT
TTCCAATACCTATGTGACGCAAGGATTCGAAGCCGGGATCCGGAAACGCC
ATGCCTTATATAAACAACTGGTCGCGCACCGGCGCTTGCCCGACCAAGGC
TGGGACGACGAGACAATTGAGGGAGTCCTGCACGACTTGGCCATGATGGA
TAGCAACAACTTTCTCGGCAACGTCGGCGTCGGGGAGAGAGAAGCCCGGA
TTTTTTCTTCCTTGGTGCGACGACGGCATTTTGGCCTAGGACACGGGATG
GGGAGGTCGGGTGATATCAATGAGCCACAGCCCAAGGCAGCAGGATCGTC
GTTGCTGGTAAGATTAACCAACCTTCTGGCATTAGACGCAGTGCGTCTAG
CGGGTTTGACACGGATGCAGGACTGCGTGGTCTTGCCGTTGGCCACGGGA
ATGGCAATGACCATGACGCTATTGACCTTGCGGCAGGACGCCGAGAAGAA
GGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGAAAG
CAGCAGAAAAGACGTCGACGTTACGTTCTGCATCTTCGTTAGCACCTTTA
CTCCTGCCTTATCCTCGCCCTCACTACGTCATCTTTCCCCGAATCGACCA
AAAATCCTGCCTTAAAGCCATCGTCACCGCCGGCCTCACGCCCCTCCTCC
TCCCCCCATCCTCTCCCCAACCACCGACGAACTCCAAACCAACCTACCCC
TCCTCCTCTCCCTCCTGCAAGACCACCCAGCAAAGACTAATATCCTGGCT
ATACTCTCCACTACCTCATGTTTCGCTCCTCGTGCCCCTGATAACATTGT
TGAAATCGCCCGGCTAG
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Synonyms
Publications