NO05G00470.1, NO05G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00470.1
Unique NameNO05G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1248
Alignment locationchr5:173008..174255 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:173008..174255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00470.1 vs.
Match: EWM28342.1 (transcription elongation factor spt4 [Nannochloropsis gaditana])

HSP 1 Score: 229.2 bits (583), Expect = 1.200e-56
Identity = 144/226 (63.72%), Postives = 167/226 (73.89%), Query Frame = 0 
Query:    1 MSSSSSSEDEDFLP-------PKATLNDVSSSDSDSSDEENEEEGEVTGEEIKPSGGGADNNA-------PKARPVFDDEDDEDSDDSSDEEDDDGALPTRKRPAESDDDDDDDEEDEEEDEDDEEDGQNTFAELPQATKGLRACRKCRLIKEFSQFVERGCDNCRQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGEEEFDMGLEE 213
            M SS+SS+DED  P       PK   N   SSD +  +EE EEEG   GEE K S    DNNA        +A    D+E +EDS++SS+EE+D   LP R+R  E  +D+D ++E+EEE+E++EE+  N FAELPQATKGLRACRKCRLIKEF+QFVE GCDNC QFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRY+PGLYALQVEGEEEFD   EE
Sbjct:    1 MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEG--AGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEED---LPVRRR--EEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219
The following BLAST results are available for this feature:
BLAST of NO05G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28342.11.200e-5663.72transcription elongation factor spt4 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00470NO05G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00470.1NO05G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00470.1.cds1NO05G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00470.1 ID=NO05G00470.1|Name=NO05G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
AGTATAAGTGCGTATAGGAAAGAACGGTCATCCGAGCGAGTGTGAGTATC
AATCAAATGGCCCGCATGTGCGGGGTGGTGGTGGGTGGGGAGGCCAAAAG
TGCCAAGGCGGATTTCTAAGCCTAGAAGCTTGAAACCTAGCAAGATCTCC
CTCCTTACGAAAAATTTCACATGTACATGTAATAGTCTTGTTGAGCAGTA
AGCGTGCTGAGTGTTGATAGGTGATGAAAGTATCACATCAAAAAGAGGCT
TGGAAAGCGAGGATGGGTTGGGCGGAACGGAGAGGCGGAGAAGAGAAGCA
GCGGGGTTGGGAGGCAACTCTGTCTTGTGTTTTCGACATCGCACACATAT
ATACAGACCACACAGCCTCAAATGCACAATGCCAGCCTGTTTGTTGTCGT
ATTTAAAGCCCCTTGCTTTCCTTGCCGGGCTCATCCTCTCCCTCCCTCCA
CCCTCCTATCATCACTTAGGGGCAAGGAGGGGGACAGTAGGCTCGCTCGG
GACAACAGGAACGAAGCCTGTAACGCACCATGTCATCTTCTTCATCCTCC
GAGGACGAGGATTTCTTGCCGCCCAAGGCCACCCTGAATGATGTGAGCAG
CAGCGACAGCGACAGCAGTGATGAGGAAAACGAGGAGGAAGGGGAAGTGA
CTGGGGAGGAGATCAAGCCCAGCGGTGGTGGCGCCGATAACAATGCTCCG
AAAGCCCGCCCTGTCTTTGACGATGAAGATGACGAGGACAGTGATGATAG
TAGCGATGAGGAGGACGACGACGGCGCATTGCCGACACGGAAGCGACCGG
CGGAGAGTGATGACGACGACGACGACGATGAGGAGGACGAAGAGGAAGAC
GAGGATGATGAGGAGGACGGACAGAACACTTTTGCAGAGCTCCCGCAAGC
GACCAAGGGTCTACGGGCCTGCCGTAAATGCCGTTTGATCAAGGAATTCT
CCCAGTTTGTGGAGCGCGGGTGTGACAATTGCCGACAGTTCGAGGACCAG
GAGGAGGCGGCTGAGTTCACCTCGCCGCATTACACAGGGATGATGGCACT
GGTGCACCCAGAGGACTCGTGGTCAGCCAAGTGGCAGGGGGCAAGGAGAT
ATAAGCCAGGGTTGTATGCATTGCAAGTGGAGGGAGAGGAGGAGTTTGAT
ATGGGGTTAGAGGAGTAGGAGGAGGGAGGGAGGGGGGCAGAGGAGAGCGG
ATGGGAAGGGAAGAGAAAAAGAAAAAACGAAGTGTAAAGGTGCGGGGA
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protein sequence of NO05G00470.1

>NO05G00470.1-protein ID=NO05G00470.1-protein|Name=NO05G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MSSSSSSEDEDFLPPKATLNDVSSSDSDSSDEENEEEGEVTGEEIKPSGG
GADNNAPKARPVFDDEDDEDSDDSSDEEDDDGALPTRKRPAESDDDDDDD
EEDEEEDEDDEEDGQNTFAELPQATKGLRACRKCRLIKEFSQFVERGCDN
CRQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQV
EGEEEFDMGLEE*
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mRNA from alignment at chr5:173008..174255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00470.1 ID=NO05G00470.1|Name=NO05G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at chr5:173008..174255+ (Nannochloropsis oceanica)
AGTATAAGTGCGTATAGGAAAGAACGGTCATCCGAGCGAGTGTGAGTATC
AATCAAATGGCCCGCATGTGCGGGGTGGTGGTGGGTGGGGAGGCCAAAAG
TGCCAAGGCGGATTTCTAAGCCTAGAAGCTTGAAACCTAGCAAGATCTCC
CTCCTTACGAAAAATTTCACATGTACATGTAATAGTCTTGTTGAGCAGTA
AGCGTGCTGAGTGTTGATAGGTGATGAAAGTATCACATCAAAAAGAGGCT
TGGAAAGCGAGGATGGGTTGGGCGGAACGGAGAGGCGGAGAAGAGAAGCA
GCGGGGTTGGGAGGCAACTCTGTCTTGTGTTTTCGACATCGCACACATAT
ATACAGACCACACAGCCTCAAATGCACAATGCCAGCCTGTTTGTTGTCGT
ATTTAAAGCCCCTTGCTTTCCTTGCCGGGCTCATCCTCTCCCTCCCTCCA
CCCTCCTATCATCACTTAGGGGCAAGGAGGGGGACAGTAGGCTCGCTCGG
GACAACAGGAACGAAGCCTGTAACGCACCATGTCATCTTCTTCATCCTCC
GAGGACGAGGATTTCTTGCCGCCCAAGGCCACCCTGAATGATGTGAGCAG
CAGCGACAGCGACAGCAGTGATGAGGAAAACGAGGAGGAAGGGGAAGTGA
CTGGGGAGGAGATCAAGCCCAGCGGTGGTGGCGCCGATAACAATGCTCCG
AAAGCCCGCCCTGTCTTTGACGATGAAGATGACGAGGACAGTGATGATAG
TAGCGATGAGGAGGACGACGACGGCGCATTGCCGACACGGAAGCGACCGG
CGGAGAGTGATGACGACGACGACGACGATGAGGAGGACGAAGAGGAAGAC
GAGGATGATGAGGAGGACGGACAGAACACTTTTGCAGAGCTCCCGCAAGC
GACCAAGGGTCTACGGGCCTGCCGTAAATGCCGTTTGATCAAGGAATTCT
CCCAGTTTGTGGAGCGCGGGTGTGACAATTGCCGACAGTTCGAGGACCAG
GAGGAGGCGGCTGAGTTCACCTCGCCGCATTACACAGGGATGATGGCACT
GGTGCACCCAGAGGACTCGTGGTCAGCCAAGTGGCAGGGGGCAAGGAGAT
ATAAGCCAGGGTTGTATGCATTGCAAGTGGAGGGAGAGGAGGAGTTTGAT
ATGGGGTTAGAGGAGTAGGAGGAGGGAGGGAGGGGGGCAGAGGAGAGCGG
ATGGGAAGGGAAGAGAAAAAGAAAAAACGAAGTGTAAAGGTGCGGGGA
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Coding sequence (CDS) from alignment at chr5:173008..174255+

>NO05G00470.1 ID=NO05G00470.1|Name=NO05G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr5:173008..174255+ (Nannochloropsis oceanica)
ATGTCATCTTCTTCATCCTCCGAGGACGAGGATTTCTTGCCGCCCAAGGC
CACCCTGAATGATGTGAGCAGCAGCGACAGCGACAGCAGTGATGAGGAAA
ACGAGGAGGAAGGGGAAGTGACTGGGGAGGAGATCAAGCCCAGCGGTGGT
GGCGCCGATAACAATGCTCCGAAAGCCCGCCCTGTCTTTGACGATGAAGA
TGACGAGGACAGTGATGATAGTAGCGATGAGGAGGACGACGACGGCGCAT
TGCCGACACGGAAGCGACCGGCGGAGAGTGATGACGACGACGACGACGAT
GAGGAGGACGAAGAGGAAGACGAGGATGATGAGGAGGACGGACAGAACAC
TTTTGCAGAGCTCCCGCAAGCGACCAAGGGTCTACGGGCCTGCCGTAAAT
GCCGTTTGATCAAGGAATTCTCCCAGTTTGTGGAGCGCGGGTGTGACAAT
TGCCGACAGTTCGAGGACCAGGAGGAGGCGGCTGAGTTCACCTCGCCGCA
TTACACAGGGATGATGGCACTGGTGCACCCAGAGGACTCGTGGTCAGCCA
AGTGGCAGGGGGCAAGGAGATATAAGCCAGGGTTGTATGCATTGCAAGTG
GAGGGAGAGGAGGAGTTTGATATGGGGTTAGAGGAGTAG
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Synonyms
Publications