NO05G00310.1, NO05G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00310.1
Unique NameNO05G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length480
Alignment locationchr5:127290..127769 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:127290..127769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00310.1 vs.
Match: XP_005855308.1 (myst esa1-associated factor 6-like protein [Nannochloropsis gaditana CCMP526]; EKU21050.1 myst esa1-associated factor 6-like protein [Nannochloropsis gaditana CCMP526]; EWM28361.1 Histone H4 acetyltransferase, NuA4 complex, Eaf6 [Nannochloropsis gaditana])

HSP 1 Score: 191.8 bits (486), Expect = 1.600e-45
Identity = 100/144 (69.44%), Postives = 112/144 (77.78%), Query Frame = 0 
Query:   15 SFPLPAFPPPHSSSSSSSSSGHPSTLPHLPPGTNTKGLSPEMEEILREQARVDQLLGNLEAEIAKREDEYFEKTAHGNIVRGWDGVLDNKPPPKRRYEGRERVFTWSSYTYWARHGEGAFLAQQASETMLMGVGSQEMDDGGGG 159
            SFPLP  P       +S+S    S LP LPPG + KGLSPEMEEILREQARV+QLLG +EAEIAKRED+YFE+TAHGNIVRGW+GVLDNKPPPKRRYEGRERVFTWSSYTYW+RHG GA L +Q S+  L   GS+   DG  G
Sbjct:   23 SFPLPTLP-------ASASPASTSALPPLPPGLSNKGLSPEMEEILREQARVEQLLGQVEAEIAKREDDYFERTAHGNIVRGWEGVLDNKPPPKRRYEGRERVFTWSSYTYWSRHGAGAQLQKQTSDASL--DGSKGFADGEEG 157
The following BLAST results are available for this feature:
BLAST of NO05G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855308.11.600e-4569.44myst esa1-associated factor 6-like protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00310NO05G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00310.1NO05G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00310.1.cds1NO05G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00310.1 ID=NO05G00310.1|Name=NO05G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=480bp
ATGTCCTTTTCTGGGGGCACTTTAGGGGGCAACAACGTGGCTTCGTTCCC
TTTACCCGCCTTCCCGCCTCCCCATTCCTCCTCCTCTTCCTCCTCCTCCT
CCGGCCACCCTTCCACCCTCCCCCACCTTCCCCCGGGCACCAATACCAAG
GGCCTGAGCCCCGAGATGGAGGAGATCTTGCGAGAGCAGGCCCGGGTGGA
TCAGCTCCTGGGGAACTTAGAGGCGGAGATTGCCAAGCGCGAGGACGAGT
ACTTTGAGAAGACGGCTCACGGAAACATCGTAAGGGGGTGGGATGGTGTC
CTAGATAACAAGCCTCCACCCAAGAGGAGGTACGAGGGGCGCGAGCGGGT
GTTCACCTGGTCGAGCTACACCTATTGGGCACGACACGGAGAAGGGGCCT
TCCTGGCACAGCAAGCGAGTGAGACCATGTTGATGGGAGTAGGGAGTCAG
GAGATGGATGATGGAGGAGGGGGGGGGTGA
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protein sequence of NO05G00310.1

>NO05G00310.1-protein ID=NO05G00310.1-protein|Name=NO05G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MSFSGGTLGGNNVASFPLPAFPPPHSSSSSSSSSGHPSTLPHLPPGTNTK
GLSPEMEEILREQARVDQLLGNLEAEIAKREDEYFEKTAHGNIVRGWDGV
LDNKPPPKRRYEGRERVFTWSSYTYWARHGEGAFLAQQASETMLMGVGSQ
EMDDGGGGG*
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mRNA from alignment at chr5:127290..127769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00310.1 ID=NO05G00310.1|Name=NO05G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=480bp|location=Sequence derived from alignment at chr5:127290..127769- (Nannochloropsis oceanica)
ATGTCCTTTTCTGGGGGCACTTTAGGGGGCAACAACGTGGCTTCGTTCCC
TTTACCCGCCTTCCCGCCTCCCCATTCCTCCTCCTCTTCCTCCTCCTCCT
CCGGCCACCCTTCCACCCTCCCCCACCTTCCCCCGGGCACCAATACCAAG
GGCCTGAGCCCCGAGATGGAGGAGATCTTGCGAGAGCAGGCCCGGGTGGA
TCAGCTCCTGGGGAACTTAGAGGCGGAGATTGCCAAGCGCGAGGACGAGT
ACTTTGAGAAGACGGCTCACGGAAACATCGTAAGGGGGTGGGATGGTGTC
CTAGATAACAAGCCTCCACCCAAGAGGAGGTACGAGGGGCGCGAGCGGGT
GTTCACCTGGTCGAGCTACACCTATTGGGCACGACACGGAGAAGGGGCCT
TCCTGGCACAGCAAGCGAGTGAGACCATGTTGATGGGAGTAGGGAGTCAG
GAGATGGATGATGGAGGAGGGGGGGGGTGA
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Coding sequence (CDS) from alignment at chr5:127290..127769-

>NO05G00310.1 ID=NO05G00310.1|Name=NO05G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at chr5:127290..127769- (Nannochloropsis oceanica)
ATGTCCTTTTCTGGGGGCACTTTAGGGGGCAACAACGTGGCTTCGTTCCC
TTTACCCGCCTTCCCGCCTCCCCATTCCTCCTCCTCTTCCTCCTCCTCCT
CCGGCCACCCTTCCACCCTCCCCCACCTTCCCCCGGGCACCAATACCAAG
GGCCTGAGCCCCGAGATGGAGGAGATCTTGCGAGAGCAGGCCCGGGTGGA
TCAGCTCCTGGGGAACTTAGAGGCGGAGATTGCCAAGCGCGAGGACGAGT
ACTTTGAGAAGACGGCTCACGGAAACATCGTAAGGGGGTGGGATGGTGTC
CTAGATAACAAGCCTCCACCCAAGAGGAGGTACGAGGGGCGCGAGCGGGT
GTTCACCTGGTCGAGCTACACCTATTGGGCACGACACGGAGAAGGGGCCT
TCCTGGCACAGCAAGCGAGTGAGACCATGTTGATGGGAGTAGGGAGTCAG
GAGATGGATGATGGAGGAGGGGGGGGGTGA
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Synonyms
Publications