NO05G00300.1, NO05G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00300.1
Unique NameNO05G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr5:127067..129470 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:127067..129470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00300.1 vs.
Match: EWM28359.1 (hypothetical protein Naga_100368g7 [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 3.200e-75
Identity = 175/340 (51.47%), Postives = 214/340 (62.94%), Query Frame = 0 
Query:   13 TTRQ--VPIFALLLCLLQVHSSNSS--SSDPTPPSWGPIFTTSYLATDPAPFGTVSPLPLPYKGTWSYNWPLQRQRLEYTFWDMEGGGREGEKSVGKRRTLVELWRGHEEVYLFSPSDETCELIDLWPSFEPLSPEWLRKEAGKEGEGGREGGAKAALYRGQAYDVMRS-RNGSEMLVNADIWEEAREGGRENFSPPCPSMVAYFLSSQQQQQQQQQQQQQQPLARQAKGEVDIPLRLMGPVPTAGGREEEGREGGM---VRAFFFSEFSTVPPSERSFALPSFCRNASVVIFPSKEEEGKDEEEERKGGLLYRYGRRR--DLHAAFLSRRPVKGEEAEE 343
            TTRQ   P F L L  L V  + ++  S+ PTPPSWGP F+ +YLATDP+P G + P P  YKGTW Y+WPLQRQRLEY F++   G     +   K +TLVELWRGHEEVY+FSP+D +C L+DLWP F PLSP WL       G G ++G  + ALYRG+AYDVMRS +NGSE+LV  + WE   EGG        P MVAYFLS  ++   +        + ++ +G+VD+PLR++GPVP  G   E GREGG    VR F FS+FST PPSE  F LPS+CRNASVV+ P    EG   E  R+GGL    GR R   LH AFL R    GE AEE
Sbjct:    4 TTRQQHTPFFLLCLFFLYVARARNTRDSTIPTPPSWGPTFSVAYLATDPSPVGRLPPFPFSYKGTWHYHWPLQRQRLEYNFYEESPGSTGAVER--KEKTLVELWRGHEEVYVFSPTDRSCRLLDLWPDFTPLSPHWLNGH----GTGKKKG--REALYRGRAYDVMRSVQNGSEVLVEVERWEGGAEGG---VGTAVPGMVAYFLSPPREDPGK--------VVQETRGKVDVPLRVLGPVPGWGEGGEGGREGGREEAVRVFSFSDFSTQPPSENLFVLPSYCRNASVVVLPQDMGEG-GGEGGREGGL----GRLRVEALHTAFLGRGR-GGEAAEE 318
The following BLAST results are available for this feature:
BLAST of NO05G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28359.13.200e-7551.47hypothetical protein Naga_100368g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00300NO05G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00300.1NO05G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00300.1.cds1NO05G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00300.1.cds2NO05G00300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00300.1 ID=NO05G00300.1|Name=NO05G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp
CCTCTCTAATCATTTTTTTCTTGTCTTCGACTCGGTTCCCTATGTTTACT
TTTTTTTTTCCTGCCTGCGTTGGATCAACTTTACATGGACATGTCGTCCT
CCTCCTCACTACTCTCCCCCCCCGCATACCCCCTTCGTTGCTGCTGCCGC
CTTTTCCTCTTCTTCGCCGCCATCACCTTAGGGTCTCTCGGGCTCGGAAT
GGTAAGAAACGATCGGCTCCGTCTCACCCCCCCCCTCCTCCATCATCCAT
CTCCTGACTCCCTACTCCCATCAACATGGTCTCACTCGCTTGCTGTGCCA
GGAAGGCCCCTTCTCCGTGTCGTGCCCAATAGGTGTAGCTCGACCAGGTG
AACACCCGCTCGCGCCCCTCGTACCTCCTCTTGGGTGGAGGCTTGTTATC
TAGGACACCATCCCACCCCCTTACGATGTTTCCGTGAGCCGTCTTCTCAA
AGTACTCGTCCTCGCGCTTGGCAATCTCCGCCTCTAAGTTCCCCAGGAGC
TGATCCACCCGGGCCTGCTCTCGCAAGATCTCCTCCATCTCGGGGCTCAG
GCCCTTGGTATTGGTGCCCGGGGGAAGGTGGGGGAGGGTGGAAGGGTGGC
CGGAGGAGGAGGAGGAAGAGGAGGAGGAATGGGGAGGCGGGAAGGCGGGT
AAAGGGAACGAAGCCACGTTGTTGCCCCCTAAAGTGCCCCCAGAAAAGGA
CATACGATGCTGTGATGGATTGGTGGTGTGTGTGTGTACGTGTGTGAGTA
TTGTGCGGGAGCTCAGGGACCGAATGAGGAGGGATGCGGACATGATGATG
CACGAAATGGTGTGATTGATGGCTGGACACACCTGTGATGGTGCATGAAT
TTGCCCGTCGTGACTCGCGCCTTGAAGCGGCACAAATGAGAGATAAAACG
AGATGCTTTACAGGTCTAACCCACCTCCCTCCTCCGCGTCATTATCTTGA
ACACCACCCGGCTTAATATCGACCCTTTACCCACTAAATACGTGCACAGA
GTCTTGTACAAGCCCAAGCCGATGGCGCTTCTTTTAGAAGCTGGTATGTC
GTTGAGAACGACAAGGCAAGTCCCCATCTTCGCACTGCTGCTGTGCCTCC
TTCAAGTCCACAGCAGCAACAGCAGCAGCAGCGACCCCACCCCACCGTCT
TGGGGCCCAATCTTTACCACATCATATCTAGCCACGGACCCAGCCCCTTT
CGGAACCGTCTCGCCCTTGCCCTTGCCCTACAAAGGCACTTGGTCTTACA
ATTGGCCACTGCAACGCCAGCGTCTCGAATACACGTTTTGGGACATGGAG
GGTGGAGGGAGGGAGGGAGAAAAGAGCGTAGGAAAGCGGCGGACCCTTGT
CGAGTTATGGCGCGGGCACGAGGAAGTTTATCTGTTTTCGCCCTCGGATG
AGACATGCGAATTAATTGATTTATGGCCATCATTTGAGCCGCTGTCCCCG
GAATGGCTGCGGAAGGAGGCAGGGAAGGAGGGCGAGGGAGGGAGGGAGGG
AGGGGCAAAAGCCGCCTTGTACAGGGGGCAGGCTTATGACGTTATGAGAA
GCAGGAACGGAAGTGAGATGCTGGTAAATGCGGATATATGGGAAGAAGCA
AGGGAGGGAGGACGGGAGAATTTTTCACCACCTTGCCCCTCCATGGTGGC
ATACTTTCTATCGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCCGCTAGCTAGGCAGGCCAAGGGGGAGGTAGACATCCCTCTT
CGGTTGATGGGTCCCGTGCCAACAGCAGGAGGGCGGGAAGAGGAGGGGAG
GGAGGGAGGCATGGTGAGGGCCTTTTTCTTCAGCGAGTTTTCGACGGTAC
CGCCGTCAGAGCGGTCGTTCGCCTTGCCCAGTTTCTGTCGGAATGCGAGC
GTGGTAATATTCCCTAGCAAGGAGGAGGAGGGGAAGGACGAGGAGGAAGA
AAGGAAAGGGGGACTGCTGTATCGGTATGGCCGCAGGCGGGATCTTCACG
CGGCGTTTCTGAGCCGGCGCCCCGTGAAAGGGGAGGAGGCGGAGGAGTAG
GGAGGGAGGGAGGGATGAAGCAAGAGAGAGGAGACTCTAACAAAGTACTC
GGATATAAAGAAATATGAATAAGGTTATGGTGGCGAACAACAAGAAGAAC
TTTAAGAAAAATAAAGAAAAAAAATAGAACAGCTGTCATCTGTATGCCAC
ATTGGGAGTCCCGTGTCTTGTGTGATGAGGGGCACGATGACTCCTGTCGG
CTTCATTTGCTGGAAACGTCTTACACGTTGAAATGAG
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protein sequence of NO05G00300.1

>NO05G00300.1-protein ID=NO05G00300.1-protein|Name=NO05G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MALLLEAGMSLRTTRQVPIFALLLCLLQVHSSNSSSSDPTPPSWGPIFTT
SYLATDPAPFGTVSPLPLPYKGTWSYNWPLQRQRLEYTFWDMEGGGREGE
KSVGKRRTLVELWRGHEEVYLFSPSDETCELIDLWPSFEPLSPEWLRKEA
GKEGEGGREGGAKAALYRGQAYDVMRSRNGSEMLVNADIWEEAREGGREN
FSPPCPSMVAYFLSSQQQQQQQQQQQQQQPLARQAKGEVDIPLRLMGPVP
TAGGREEEGREGGMVRAFFFSEFSTVPPSERSFALPSFCRNASVVIFPSK
EEEGKDEEEERKGGLLYRYGRRRDLHAAFLSRRPVKGEEAEE*
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mRNA from alignment at chr5:127067..129470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00300.1 ID=NO05G00300.1|Name=NO05G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at chr5:127067..129470+ (Nannochloropsis oceanica)
CCTCTCTAATCATTTTTTTCTTGTCTTCGACTCGGTTCCCTATGTTTACT
TTTTTTTTTCCTGCCTGCGTTGGATCAACTTTACATGGACATGTCGTCCT
CCTCCTCACTACTCTCCCCCCCCGCATACCCCCTTCGTTGCTGCTGCCGC
CTTTTCCTCTTCTTCGCCGCCATCACCTTAGGGTCTCTCGGGCTCGGAAT
GGTAAGAAACGATCGGCTCCGTCTCACCCCCCCCCTCCTCCATCATCCAT
CTCCTGACTCCCTACTCCCATCAACATGGTCTCACTCGCTTGCTGTGCCA
GGAAGGCCCCTTCTCCGTGTCGTGCCCAATAGGTGTAGCTCGACCAGGTG
AACACCCGCTCGCGCCCCTCGTACCTCCTCTTGGGTGGAGGCTTGTTATC
TAGGACACCATCCCACCCCCTTACGATGTTTCCGTGAGCCGTCTTCTCAA
AGTACTCGTCCTCGCGCTTGGCAATCTCCGCCTCTAAGTTCCCCAGGAGC
TGATCCACCCGGGCCTGCTCTCGCAAGATCTCCTCCATCTCGGGGCTCAG
GCCCTTGGTATTGGTGCCCGGGGGAAGGTGGGGGAGGGTGGAAGGGTGGC
CGGAGGAGGAGGAGGAAGAGGAGGAGGAATGGGGAGGCGGGAAGGCGGGT
AAAGGGAACGAAGCCACGTTGTTGCCCCCTAAAGTGCCCCCAGAAAAGGA
CATACGATGCTGTGATGGATTGGTGGTGTGTGTGTGTACGTGTGTGAGTA
TTGTGCGGGAGCTCAGGGACCGAATGAGGAGGGATGCGGACATGATGATG
CACGAAATGGTGTGATTGATGGCTGGACACACCTGTGATGGTGCATGAAT
TTGCCCGTCGTGACTCGCGCCTTGAAGCGGCACAAATGAGAGATAAAACG
AGATGCTTTACAGGTCTAACCCACCTCCCTCCTCCGCGTCATTATCTTGA
ACACCACCCGGCTTAATATCGACCCTTTACCCACTAAATACGTGCACAGA
GTCTTGTACAAGCCCAAGCCGATGGCGCTTCTTTTAGAAGCTGGTATGTC
GTTGAGAACGACAAGGCAAGTCCCCATCTTCGCACTGCTGCTGTGCCTCC
TTCAAGTCCACAGCAGCAACAGCAGCAGCAGCGACCCCACCCCACCGTCT
TGGGGCCCAATCTTTACCACATCATATCTAGCCACGGTATGTGACGGATT
TGTTTTTCTGGGTCGTGGGCAAGTTTCAATTTGTGCTTGATCCTCTCCGA
CCCTTCCCTTCGTCCATCCCTCCTCACCCTCCTTCCCTCGCCATCCGCAC
CAGGACCCAGCCCCTTTCGGAACCGTCTCGCCCTTGCCCTTGCCCTACAA
AGGCACTTGGTCTTACAATTGGCCACTGCAACGCCAGCGTCTCGAATACA
CGTTTTGGGACATGGAGGGTGGAGGGAGGGAGGGAGAAAAGAGCGTAGGA
AAGCGGCGGACCCTTGTCGAGTTATGGCGCGGGCACGAGGAAGTTTATCT
GTTTTCGCCCTCGGATGAGACATGCGAATTAATTGATTTATGGCCATCAT
TTGAGCCGCTGTCCCCGGAATGGCTGCGGAAGGAGGCAGGGAAGGAGGGC
GAGGGAGGGAGGGAGGGAGGGGCAAAAGCCGCCTTGTACAGGGGGCAGGC
TTATGACGTTATGAGAAGCAGGAACGGAAGTGAGATGCTGGTAAATGCGG
ATATATGGGAAGAAGCAAGGGAGGGAGGACGGGAGAATTTTTCACCACCT
TGCCCCTCCATGGTGGCATACTTTCTATCGTCGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGCTAGCTAGGCAGGCCAAGGGGG
AGGTAGACATCCCTCTTCGGTTGATGGGTCCCGTGCCAACAGCAGGAGGG
CGGGAAGAGGAGGGGAGGGAGGGAGGCATGGTGAGGGCCTTTTTCTTCAG
CGAGTTTTCGACGGTACCGCCGTCAGAGCGGTCGTTCGCCTTGCCCAGTT
TCTGTCGGAATGCGAGCGTGGTAATATTCCCTAGCAAGGAGGAGGAGGGG
AAGGACGAGGAGGAAGAAAGGAAAGGGGGACTGCTGTATCGGTATGGCCG
CAGGCGGGATCTTCACGCGGCGTTTCTGAGCCGGCGCCCCGTGAAAGGGG
AGGAGGCGGAGGAGTAGGGAGGGAGGGAGGGATGAAGCAAGAGAGAGGAG
ACTCTAACAAAGTACTCGGATATAAAGAAATATGAATAAGGTTATGGTGG
CGAACAACAAGAAGAACTTTAAGAAAAATAAAGAAAAAAAATAGAACAGC
TGTCATCTGTATGCCACATTGGGAGTCCCGTGTCTTGTGTGATGAGGGGC
ACGATGACTCCTGTCGGCTTCATTTGCTGGAAACGTCTTACACGTTGAAA
TGAG
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Coding sequence (CDS) from alignment at chr5:127067..129470+

>NO05G00300.1 ID=NO05G00300.1|Name=NO05G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr5:127067..129470+ (Nannochloropsis oceanica)
ATGGCGCTTCTTTTAGAAGCTGGTATGTCGTTGAGAACGACAAGGCAAGT
CCCCATCTTCGCACTGCTGCTGTGCCTCCTTCAAGTCCACAGCAGCAACA
GCAGCAGCAGCGACCCCACCCCACCGTCTTGGGGCCCAATCTTTACCACA
TCATATCTAGCCACGGACCCAGCCCCTTTCGGAACCGTCTCGCCCTTGCC
CTTGCCCTACAAAGGCACTTGGTCTTACAATTGGCCACTGCAACGCCAGC
GTCTCGAATACACGTTTTGGGACATGGAGGGTGGAGGGAGGGAGGGAGAA
AAGAGCGTAGGAAAGCGGCGGACCCTTGTCGAGTTATGGCGCGGGCACGA
GGAAGTTTATCTGTTTTCGCCCTCGGATGAGACATGCGAATTAATTGATT
TATGGCCATCATTTGAGCCGCTGTCCCCGGAATGGCTGCGGAAGGAGGCA
GGGAAGGAGGGCGAGGGAGGGAGGGAGGGAGGGGCAAAAGCCGCCTTGTA
CAGGGGGCAGGCTTATGACGTTATGAGAAGCAGGAACGGAAGTGAGATGC
TGGTAAATGCGGATATATGGGAAGAAGCAAGGGAGGGAGGACGGGAGAAT
TTTTCACCACCTTGCCCCTCCATGGTGGCATACTTTCTATCGTCGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCTAGCTAGGC
AGGCCAAGGGGGAGGTAGACATCCCTCTTCGGTTGATGGGTCCCGTGCCA
ACAGCAGGAGGGCGGGAAGAGGAGGGGAGGGAGGGAGGCATGGTGAGGGC
CTTTTTCTTCAGCGAGTTTTCGACGGTACCGCCGTCAGAGCGGTCGTTCG
CCTTGCCCAGTTTCTGTCGGAATGCGAGCGTGGTAATATTCCCTAGCAAG
GAGGAGGAGGGGAAGGACGAGGAGGAAGAAAGGAAAGGGGGACTGCTGTA
TCGGTATGGCCGCAGGCGGGATCTTCACGCGGCGTTTCTGAGCCGGCGCC
CCGTGAAAGGGGAGGAGGCGGAGGAGTAG
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Synonyms
Publications