NO05G00250.1, NO05G00250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00250.1
Unique Name	NO05G00250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2433
Alignment location	chr5:106504..108936 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:106504..108936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G00250.1 vs.
Match: EWM28364.1 (hypothetical protein Naga_101258g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-8
Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 0

Query:  622 SFLLRQPARRIPAPAPSAAPPSLPPSRPSSYRPPSSPPTASSLLGIDMRLPPPTRRREEEREGGEEGEESMVMDDVVSRLLGYGNGLLSFGG 714
            S LLR P+RR     P     S  PS  S+  P SSPPTASSLLGID  L      RE+E E G +GEE +V+DDVVSRLLG G GLLS GG
Sbjct:  197 SSLLRPPSRR-----PRVHLASSLPSSASASAPASSPPTASSLLGIDRSL----GGREDEEEEGGDGEERVVLDDVVSRLLGRGRGLLSLGG 279

The following BLAST results are available for this feature:

BLAST of NO05G00250.1 vs.

BLAST of NO05G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28364.1	1.200e-8	56.52	hypothetical protein Naga_101258g3, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00250	NO05G00250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00250.1	NO05G00250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00250.1.cds1	NO05G00250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:106504..108936+
coding sequence from alignment at chr5:106504..108936+

mRNA sequence

>NO05G00250.1 ID=NO05G00250.1|Name=NO05G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp
ATGCCACTTCTTATTGCGGTACCGCCATCTCCAACGGATCCAATGTCAGC
CGGGGGAACGCCAGAAGTCGACTCTCATGCTTCAGCCTCAGTGGCCGATG
CGCCCCGACATGCACACTTCTCCTCGGGCAGCGGGCCCTCCTCCTCCTTC
ATCTCTTCTTTACATGAGGCTGGCGCCAATTATCATCCCCCACGGGAATC
GAGGAGCTCATTACTCGGCAAGAGACGGCATTACTACTTTGAAAGTGATA
GCGACAGCGACGACGATAGCGAGGAGGAGGAGGGAGAGGAGGAGGGAGAG
GAGGAGGAGGAAGAGGATGCGGACGACGCGGGTTTGGAGGGTGAGGCACG
GGAGGAGGAAGAGGGAGTGAAGGAAGACAGCGGCCTACTTCACAGCCAAA
GCTCTGGGCTAGCCAGGTCGAAGAAGCGTAAAAATGAGAGTGAAGGGGGG
AAAGAGGAGGAGGAGGAGGAGGGTCACTCCCCTGCCGTTGGCTCTCGCAA
GCAGCCTCGGACCTACAAGGAATATATAAGATCCCGCACGGTGTCCACGT
CCACCACCACAACCACTGCCTCCTCCTCCTCATCCTCATCCTCGTCCTCC
TCGTCCTCCTCTTCGTCCTCCTCCTCTTCTTCCTCTCCCCCGGCCTATGC
GTCTCCGTCAAGTGCAAGTGCCACCAGGGTGTTCCGCCGTGGTGGCGGCC
CTGGGGCATTACCCCCCCCTCTTTCCCCGCCTCACCGCCTCGTTCTCCCT
CCACCCCAGCATGCGACTTTGACTGGACCCGTCACTTCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAG
CAACAACAGGAGGAGGAAGGGGGGGAGGAAGGAGTAGAGGATCCATGCCC
TCCTCCTTATCCGCTTCCTCTTTGACACCCGGCGACGAGATGACTACCAC
CAGCAACAACTTGAGCAGCGGAGCTGCTGCTGCTGTTACTGGAACTGCTG
GTACTGCTTCTACTAAAACCCGCCGCCTGAGAGTGTTCGAACCGCCCTCC
TCCTCCGCCTCCCTTCGTCTGCGTCAACTCCGAGAGCAACGAGGCAGTAC
CACCACCACCACCACCACCACTGCTGCTGCCACGGCTGCTGCCAGCACTG
CGGGTGCAGCGTCGTTGGCGGAAATGTCAACGCGCACTGATCCCACTATT
GCTGCTGCTGCTGCTGCTGCAGGCGCATCTTTTCGAGCTGCCGGGGGCAC
GCGTGAATCCCTTTCCTCCTTTTCCCGCATTGGTCCTGCTGCAGCAGCTG
CTTCTGCTGACCGTCGGTTGGTGAGGAGCACAGTTGTAGGGGTTTCCTCG
GGTTCATCCACTCCCTCTGAAGAGGAGGAGGAAGAGGATGATAGTGATGG
TGACGAGGACGAGGACGAGGACGACTGGAGACAAGGGCCGGCACGCAGTT
TACACGATCCTGCGTTGTTTTTGTCCTTGGGAAGAGGAGGGCGGCGTTTG
CCCCCTCCTTCCCAGTCGCGCCTGCTGCTACAGCAGCAACAGCAGCAGCA
GCTGCAGCAGTTACGGCGGGCGAGGCGTCATCGTTACTGGCCTAACGATG
ATGATGATGAAGGAGATGATCTGGAAGGGATGCGAAGAGAGGTGGACGAG
GAGGAGGAAGAGGAGGACTTGTGGGCTATGGCCGTCGGTCGCAGTCGCCA
CAACAACAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAACAACAACAACAACAACAACAACAACAATAACAAT
AATACCAACAGCAGCAGAACAAGCCGCAGAGGCAGCAGCAGCAGCAGCAG
CAGTAGCAACAGCAGCTTCCTGCTTCGACAGCCGGCACGTCGGATCCCTG
CCCCTGCCCCTTCCGCAGCCCCGCCCTCTCTCCCGCCCTCCCGCCCTTCC
TCGTACCGCCCTCCCTCGTCCCCTCCCACGGCATCCTCTCTCTTGGGGAT
TGACATGCGTCTGCCCCCACCGACGAGGAGGAGGGAGGAAGAGAGGGAGG
GAGGGGAAGAGGGGGAGGAGTCCATGGTGATGGACGATGTTGTCTCGCGA
TTGTTGGGGTATGGAAATGGGCTACTGAGTTTCGGCGGTCGATCCCTCGC
CTCTCACAATCGGCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTCCTCCTTCTTCTCCTCTTCTTCATCGTCCTTGTATATG
CCCTCGTTGTTGGAGTCCTCCAGGTCGTTTGGGGGGGGCGGGGGAGGGAT
GGGGGAGGGGAGGGGTATGAGGCCTGCTATGCCTATCACCGTGTCAAGGT
GGAGTTGCCTCCTCAGTAGCGTGAGGAGGGCGGCACGGAGTCAGGGAAAG
GAGCACATATTTTGTGATAATGATGACATTTGA

protein sequence of NO05G00250.1

>NO05G00250.1-protein ID=NO05G00250.1-protein|Name=NO05G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=811bp
MPLLIAVPPSPTDPMSAGGTPEVDSHASASVADAPRHAHFSSGSGPSSSF
ISSLHEAGANYHPPRESRSSLLGKRRHYYFESDSDSDDDSEEEEGEEEGE
EEEEEDADDAGLEGEAREEEEGVKEDSGLLHSQSSGLARSKKRKNESEGG
KEEEEEEGHSPAVGSRKQPRTYKEYIRSRTVSTSTTTTTASSSSSSSSSS
SSSSSSSSSSSSPPAYASPSSASATRVFRRGGGPGALPPPLSPPHRLVLP
PPQHATLTGPVTSAAAAAAAAAAAAAAAAAAAAATTGGGRGGGRSRGSMP
SSLSASSLTPGDEMTTTSNNLSSGAAAAVTGTAGTASTKTRRLRVFEPPS
SSASLRLRQLREQRGSTTTTTTTTAAATAAASTAGAASLAEMSTRTDPTI
AAAAAAAGASFRAAGGTRESLSSFSRIGPAAAAASADRRLVRSTVVGVSS
GSSTPSEEEEEEDDSDGDEDEDEDDWRQGPARSLHDPALFLSLGRGGRRL
PPPSQSRLLLQQQQQQQLQQLRRARRHRYWPNDDDDEGDDLEGMRREVDE
EEEEEDLWAMAVGRSRHNNSNNSNNNNNNNNNNNNNNHNNNNNNNNNNNN
NTNSSRTSRRGSSSSSSSSNSSFLLRQPARRIPAPAPSAAPPSLPPSRPS
SYRPPSSPPTASSLLGIDMRLPPPTRRREEEREGGEEGEESMVMDDVVSR
LLGYGNGLLSFGGRSLASHNRHHHQQQQQQQQQQQQQSSFFSSSSSSLYM
PSLLESSRSFGGGGGGMGEGRGMRPAMPITVSRWSCLLSSVRRAARSQGK
EHIFCDNDDI*

mRNA from alignment at chr5:106504..108936+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00250.1 ID=NO05G00250.1|Name=NO05G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr5:106504..108936+ (Nannochloropsis oceanica)
ATGCCACTTCTTATTGCGGTACCGCCATCTCCAACGGATCCAATGTCAGC
CGGGGGAACGCCAGAAGTCGACTCTCATGCTTCAGCCTCAGTGGCCGATG
CGCCCCGACATGCACACTTCTCCTCGGGCAGCGGGCCCTCCTCCTCCTTC
ATCTCTTCTTTACATGAGGCTGGCGCCAATTATCATCCCCCACGGGAATC
GAGGAGCTCATTACTCGGCAAGAGACGGCATTACTACTTTGAAAGTGATA
GCGACAGCGACGACGATAGCGAGGAGGAGGAGGGAGAGGAGGAGGGAGAG
GAGGAGGAGGAAGAGGATGCGGACGACGCGGGTTTGGAGGGTGAGGCACG
GGAGGAGGAAGAGGGAGTGAAGGAAGACAGCGGCCTACTTCACAGCCAAA
GCTCTGGGCTAGCCAGGTCGAAGAAGCGTAAAAATGAGAGTGAAGGGGGG
AAAGAGGAGGAGGAGGAGGAGGGTCACTCCCCTGCCGTTGGCTCTCGCAA
GCAGCCTCGGACCTACAAGGAATATATAAGATCCCGCACGGTGTCCACGT
CCACCACCACAACCACTGCCTCCTCCTCCTCATCCTCATCCTCGTCCTCC
TCGTCCTCCTCTTCGTCCTCCTCCTCTTCTTCCTCTCCCCCGGCCTATGC
GTCTCCGTCAAGTGCAAGTGCCACCAGGGTGTTCCGCCGTGGTGGCGGCC
CTGGGGCATTACCCCCCCCTCTTTCCCCGCCTCACCGCCTCGTTCTCCCT
CCACCCCAGCATGCGACTTTGACTGGACCCGTCACTTCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAG
CAACAACAGGAGGAGGAAGGGGGGGAGGAAGGAGTAGAGGATCCATGCCC
TCCTCCTTATCCGCTTCCTCTTTGACACCCGGCGACGAGATGACTACCAC
CAGCAACAACTTGAGCAGCGGAGCTGCTGCTGCTGTTACTGGAACTGCTG
GTACTGCTTCTACTAAAACCCGCCGCCTGAGAGTGTTCGAACCGCCCTCC
TCCTCCGCCTCCCTTCGTCTGCGTCAACTCCGAGAGCAACGAGGCAGTAC
CACCACCACCACCACCACCACTGCTGCTGCCACGGCTGCTGCCAGCACTG
CGGGTGCAGCGTCGTTGGCGGAAATGTCAACGCGCACTGATCCCACTATT
GCTGCTGCTGCTGCTGCTGCAGGCGCATCTTTTCGAGCTGCCGGGGGCAC
GCGTGAATCCCTTTCCTCCTTTTCCCGCATTGGTCCTGCTGCAGCAGCTG
CTTCTGCTGACCGTCGGTTGGTGAGGAGCACAGTTGTAGGGGTTTCCTCG
GGTTCATCCACTCCCTCTGAAGAGGAGGAGGAAGAGGATGATAGTGATGG
TGACGAGGACGAGGACGAGGACGACTGGAGACAAGGGCCGGCACGCAGTT
TACACGATCCTGCGTTGTTTTTGTCCTTGGGAAGAGGAGGGCGGCGTTTG
CCCCCTCCTTCCCAGTCGCGCCTGCTGCTACAGCAGCAACAGCAGCAGCA
GCTGCAGCAGTTACGGCGGGCGAGGCGTCATCGTTACTGGCCTAACGATG
ATGATGATGAAGGAGATGATCTGGAAGGGATGCGAAGAGAGGTGGACGAG
GAGGAGGAAGAGGAGGACTTGTGGGCTATGGCCGTCGGTCGCAGTCGCCA
CAACAACAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAACAACAACAACAACAACAACAACAACAATAACAAT
AATACCAACAGCAGCAGAACAAGCCGCAGAGGCAGCAGCAGCAGCAGCAG
CAGTAGCAACAGCAGCTTCCTGCTTCGACAGCCGGCACGTCGGATCCCTG
CCCCTGCCCCTTCCGCAGCCCCGCCCTCTCTCCCGCCCTCCCGCCCTTCC
TCGTACCGCCCTCCCTCGTCCCCTCCCACGGCATCCTCTCTCTTGGGGAT
TGACATGCGTCTGCCCCCACCGACGAGGAGGAGGGAGGAAGAGAGGGAGG
GAGGGGAAGAGGGGGAGGAGTCCATGGTGATGGACGATGTTGTCTCGCGA
TTGTTGGGGTATGGAAATGGGCTACTGAGTTTCGGCGGTCGATCCCTCGC
CTCTCACAATCGGCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTCCTCCTTCTTCTCCTCTTCTTCATCGTCCTTGTATATG
CCCTCGTTGTTGGAGTCCTCCAGGTCGTTTGGGGGGGGCGGGGGAGGGAT
GGGGGAGGGGAGGGGTATGAGGCCTGCTATGCCTATCACCGTGTCAAGGT
GGAGTTGCCTCCTCAGTAGCGTGAGGAGGGCGGCACGGAGTCAGGGAAAG
GAGCACATATTTTGTGATAATGATGACATTTGA

Coding sequence (CDS) from alignment at chr5:106504..108936+

>NO05G00250.1 ID=NO05G00250.1|Name=NO05G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=2433bp|location=Sequence derived from alignment at chr5:106504..108936+ (Nannochloropsis oceanica)
ATGCCACTTCTTATTGCGGTACCGCCATCTCCAACGGATCCAATGTCAGC
CGGGGGAACGCCAGAAGTCGACTCTCATGCTTCAGCCTCAGTGGCCGATG
CGCCCCGACATGCACACTTCTCCTCGGGCAGCGGGCCCTCCTCCTCCTTC
ATCTCTTCTTTACATGAGGCTGGCGCCAATTATCATCCCCCACGGGAATC
GAGGAGCTCATTACTCGGCAAGAGACGGCATTACTACTTTGAAAGTGATA
GCGACAGCGACGACGATAGCGAGGAGGAGGAGGGAGAGGAGGAGGGAGAG
GAGGAGGAGGAAGAGGATGCGGACGACGCGGGTTTGGAGGGTGAGGCACG
GGAGGAGGAAGAGGGAGTGAAGGAAGACAGCGGCCTACTTCACAGCCAAA
GCTCTGGGCTAGCCAGGTCGAAGAAGCGTAAAAATGAGAGTGAAGGGGGG
AAAGAGGAGGAGGAGGAGGAGGGTCACTCCCCTGCCGTTGGCTCTCGCAA
GCAGCCTCGGACCTACAAGGAATATATAAGATCCCGCACGGTGTCCACGT
CCACCACCACAACCACTGCCTCCTCCTCCTCATCCTCATCCTCGTCCTCC
TCGTCCTCCTCTTCGTCCTCCTCCTCTTCTTCCTCTCCCCCGGCCTATGC
GTCTCCGTCAAGTGCAAGTGCCACCAGGGTGTTCCGCCGTGGTGGCGGCC
CTGGGGCATTACCCCCCCCTCTTTCCCCGCCTCACCGCCTCGTTCTCCCT
CCACCCCAGCATGCGACTTTGACTGGACCCGTCACTTCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAG
CAACAACAGGAGGAGGAAGGGGGGGAGGAAGGAGTAGAGGATCCATGCCC
TCCTCCTTATCCGCTTCCTCTTTGACACCCGGCGACGAGATGACTACCAC
CAGCAACAACTTGAGCAGCGGAGCTGCTGCTGCTGTTACTGGAACTGCTG
GTACTGCTTCTACTAAAACCCGCCGCCTGAGAGTGTTCGAACCGCCCTCC
TCCTCCGCCTCCCTTCGTCTGCGTCAACTCCGAGAGCAACGAGGCAGTAC
CACCACCACCACCACCACCACTGCTGCTGCCACGGCTGCTGCCAGCACTG
CGGGTGCAGCGTCGTTGGCGGAAATGTCAACGCGCACTGATCCCACTATT
GCTGCTGCTGCTGCTGCTGCAGGCGCATCTTTTCGAGCTGCCGGGGGCAC
GCGTGAATCCCTTTCCTCCTTTTCCCGCATTGGTCCTGCTGCAGCAGCTG
CTTCTGCTGACCGTCGGTTGGTGAGGAGCACAGTTGTAGGGGTTTCCTCG
GGTTCATCCACTCCCTCTGAAGAGGAGGAGGAAGAGGATGATAGTGATGG
TGACGAGGACGAGGACGAGGACGACTGGAGACAAGGGCCGGCACGCAGTT
TACACGATCCTGCGTTGTTTTTGTCCTTGGGAAGAGGAGGGCGGCGTTTG
CCCCCTCCTTCCCAGTCGCGCCTGCTGCTACAGCAGCAACAGCAGCAGCA
GCTGCAGCAGTTACGGCGGGCGAGGCGTCATCGTTACTGGCCTAACGATG
ATGATGATGAAGGAGATGATCTGGAAGGGATGCGAAGAGAGGTGGACGAG
GAGGAGGAAGAGGAGGACTTGTGGGCTATGGCCGTCGGTCGCAGTCGCCA
CAACAACAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCACAACAACAACAACAACAACAACAACAACAATAACAAT
AATACCAACAGCAGCAGAACAAGCCGCAGAGGCAGCAGCAGCAGCAGCAG
CAGTAGCAACAGCAGCTTCCTGCTTCGACAGCCGGCACGTCGGATCCCTG
CCCCTGCCCCTTCCGCAGCCCCGCCCTCTCTCCCGCCCTCCCGCCCTTCC
TCGTACCGCCCTCCCTCGTCCCCTCCCACGGCATCCTCTCTCTTGGGGAT
TGACATGCGTCTGCCCCCACCGACGAGGAGGAGGGAGGAAGAGAGGGAGG
GAGGGGAAGAGGGGGAGGAGTCCATGGTGATGGACGATGTTGTCTCGCGA
TTGTTGGGGTATGGAAATGGGCTACTGAGTTTCGGCGGTCGATCCCTCGC
CTCTCACAATCGGCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTCCTCCTTCTTCTCCTCTTCTTCATCGTCCTTGTATATG
CCCTCGTTGTTGGAGTCCTCCAGGTCGTTTGGGGGGGGCGGGGGAGGGAT
GGGGGAGGGGAGGGGTATGAGGCCTGCTATGCCTATCACCGTGTCAAGGT
GGAGTTGCCTCCTCAGTAGCGTGAGGAGGGCGGCACGGAGTCAGGGAAAG
GAGCACATATTTTGTGATAATGATGACATTTGA

Synonyms

Publications