NO05G00140.1, NO05G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00140.1
Unique NameNO05G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1775
Alignment locationchr5:60248..62022 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:60248..62022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00140.1 vs.
Match: EWM28387.1 (methyltransferase nsun6 [Nannochloropsis gaditana])

HSP 1 Score: 644.4 bits (1661), Expect = 3.100e-181
Identity = 337/541 (62.29%), Postives = 407/541 (75.23%), Query Frame = 0 
Query:   14 RRLPAV-VHDFASYLPPIDAALDSRMVQHYGLEEWSRMRRALVTPPSHTCLRVNTLKAEAKGVLKEVDAWIDDYYRERFSSTNNDDAQTEAEVRSPPPPPRPYLHPMPPLSFDTIIIPSLPPQTSHSFPLLSSSSSSSTSHPKPFTVVVDRLCGEAVLRGADVFVRGAWSASPGIHPGCRVLLLMDLHRQSQRGCLYSDYEGEALLIGQGTAVVSRTELFTATKGLGIRVTHRVGFQAPPFNGLLPGVIFPQNLPSLLVGHVLSPSAGSSVIDLCACPGGKATHLVSLMRGKGLVVACDRSRKKVKELKALSEVMGMSSCLCPLVLDSTHAVLPKTLRRARTLPSSQPPALVAATPRDKDDLHAVEGFYPETFDHVLLDPPCSALGLRPRLSVPTTASDLDAFVLFQQQFWWSAVFLLKVGGSMTYSTCTINPAENEGMVRFALDTYPCMRLVPAEPRLGKAGSKGVEGEGLTEGERGMVQVFLPGEGRREG------EDRLDMSGFFVAKFEKVKSVFEEEEGKEEK---EEERENMGEG 545
            +  P+V +++   YLPP+D  L SRM++HYG E W+RMRRAL T PSH+CLRVNT+KA+ + VL+EV  +++++ ++   ST  ++       ++  PP +PYLHP+PPLS DTIIIP     +S   P L +  S   +   PF VVVDRLCGEAVLRGADVFVRG WSAS GI  G RVLLLMDLHR SQRGCLY+DY+GEA+ IGQG A+V R EL TAT GLGIRVTHR+G QAPP NG LPG +FPQNLPSLLVGHVL+P  GS+VIDLCACPGGKATHL +LMRG+G+VVACDRSRKK+K L+AL E MG+  CLCPLVLD+TH VLP +LR  R LPSS P A++AA   + D L  V GFYPETFDHVLLDPPCSALGLRPR S+P    DLDAFV FQ++FWW+AVFLL+VGGSMTYSTCT+NP ENE MVR+ALDTY  ++LVPAEPRLG  G     G+ L++ ERG VQ+FLPG G REG      E  LD+SGFFVAKF KV SVFE ++G+ +    ++ER +   G
Sbjct:    9 KNAPSVTIYNLPDYLPPVDEELHSRMMKHYGEEHWNRMRRALSTSPSHSCLRVNTMKADTQSVLEEVTTYVNNHRKQ---STCTEEKTARDGEQASYPPSKPYLHPIPPLSSDTIIIPHA---SSFKPPPLFNHFSPVPNKLNPFIVVVDRLCGEAVLRGADVFVRGVWSASAGIASGSRVLLLMDLHRHSQRGCLYADYQGEAICIGQGVALVPRAELVTATHGLGIRVTHRMGPQAPPLNGFLPGRLFPQNLPSLLVGHVLAPLPGSTVIDLCACPGGKATHLATLMRGEGVVVACDRSRKKIKALQALGERMGLLPCLCPLVLDTTHPVLPPSLRDRRHLPSSHPVAVLAAAAENTDGLPLVPGFYPETFDHVLLDPPCSALGLRPRFSLPVRGQDLDAFVAFQRKFWWAAVFLLRVGGSMTYSTCTLNPQENEDMVRYALDTYSILQLVPAEPRLGAPGG----GKALSDEERGKVQLFLPGGGGREGGWEEGEEGDLDVSGFFVAKFVKVASVFEGKDGEAKGTAWQDERNDRDSG 539
The following BLAST results are available for this feature:
BLAST of NO05G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28387.13.100e-18162.29methyltransferase nsun6 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00140NO05G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00140.1NO05G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00140.1.cds1NO05G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00140.1 ID=NO05G00140.1|Name=NO05G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
CACCTCTAACGCTATCCGCTTACTATACACGCTACTAACACAGAGACGAG
CATGGAATCAGCCCTAACAATGCAAATACCACCGCTTGGGCGACGCCTTC
CGGCCGTGGTGCACGATTTTGCCAGCTATCTGCCACCCATCGACGCGGCG
CTTGACAGCCGCATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCAT
GCGCCGAGCACTCGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATA
CCCTGAAGGCTGAGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATT
GACGATTACTACCGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCA
GACTGAGGCCGAAGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGC
ACCCCATGCCTCCGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCT
CCACAAACCTCGCACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTC
CACTTCCCATCCCAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCG
AAGCCGTCTTGCGTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCC
AGCCCCGGGATCCATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACA
CCGCCAATCCCAACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCC
TCTTAATCGGACAAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACA
GCCACCAAAGGCCTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGC
ACCCCCTTTCAACGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCC
CATCGCTCCTCGTGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTC
ATCGACCTCTGTGCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCT
CATGCGAGGAAAAGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAG
TCAAGGAGCTCAAGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTC
TGCCCCCTCGTCCTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCG
CCGTGCCCGAACCCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTA
CGCCCCGCGACAAAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAG
ACGTTCGACCACGTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCG
TCCTCGCCTTTCCGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCT
TATTCCAACAGCAATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGT
GGAAGCATGACGTATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGG
CATGGTCAGGTTCGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGG
CCGAGCCCCGCTTGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGA
CTGACAGAGGGGGAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGG
AAGGAGGGAGGGCGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCA
AATTTGAGAAAGTGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAA
AAAGAGGAAGAGCGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTA
AAACAAATACGTCGGAGAAGATCGGAAAGCGTATCACAAGGCGGGGCAGG
AATCCCAAGCACGGGTGGACCATGG
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protein sequence of NO05G00140.1

>NO05G00140.1-protein ID=NO05G00140.1-protein|Name=NO05G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MESALTMQIPPLGRRLPAVVHDFASYLPPIDAALDSRMVQHYGLEEWSRM
RRALVTPPSHTCLRVNTLKAEAKGVLKEVDAWIDDYYRERFSSTNNDDAQ
TEAEVRSPPPPPRPYLHPMPPLSFDTIIIPSLPPQTSHSFPLLSSSSSSS
TSHPKPFTVVVDRLCGEAVLRGADVFVRGAWSASPGIHPGCRVLLLMDLH
RQSQRGCLYSDYEGEALLIGQGTAVVSRTELFTATKGLGIRVTHRVGFQA
PPFNGLLPGVIFPQNLPSLLVGHVLSPSAGSSVIDLCACPGGKATHLVSL
MRGKGLVVACDRSRKKVKELKALSEVMGMSSCLCPLVLDSTHAVLPKTLR
RARTLPSSQPPALVAATPRDKDDLHAVEGFYPETFDHVLLDPPCSALGLR
PRLSVPTTASDLDAFVLFQQQFWWSAVFLLKVGGSMTYSTCTINPAENEG
MVRFALDTYPCMRLVPAEPRLGKAGSKGVEGEGLTEGERGMVQVFLPGEG
RREGEDRLDMSGFFVAKFEKVKSVFEEEEGKEEKEEERENMGEGEQGKR*
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mRNA from alignment at chr5:60248..62022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00140.1 ID=NO05G00140.1|Name=NO05G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at chr5:60248..62022+ (Nannochloropsis oceanica)
CACCTCTAACGCTATCCGCTTACTATACACGCTACTAACACAGAGACGAG
CATGGAATCAGCCCTAACAATGCAAATACCACCGCTTGGGCGACGCCTTC
CGGCCGTGGTGCACGATTTTGCCAGCTATCTGCCACCCATCGACGCGGCG
CTTGACAGCCGCATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCAT
GCGCCGAGCACTCGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATA
CCCTGAAGGCTGAGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATT
GACGATTACTACCGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCA
GACTGAGGCCGAAGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGC
ACCCCATGCCTCCGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCT
CCACAAACCTCGCACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTC
CACTTCCCATCCCAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCG
AAGCCGTCTTGCGTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCC
AGCCCCGGGATCCATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACA
CCGCCAATCCCAACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCC
TCTTAATCGGACAAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACA
GCCACCAAAGGCCTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGC
ACCCCCTTTCAACGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCC
CATCGCTCCTCGTGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTC
ATCGACCTCTGTGCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCT
CATGCGAGGAAAAGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAG
TCAAGGAGCTCAAGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTC
TGCCCCCTCGTCCTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCG
CCGTGCCCGAACCCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTA
CGCCCCGCGACAAAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAG
ACGTTCGACCACGTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCG
TCCTCGCCTTTCCGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCT
TATTCCAACAGCAATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGT
GGAAGCATGACGTATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGG
CATGGTCAGGTTCGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGG
CCGAGCCCCGCTTGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGA
CTGACAGAGGGGGAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGG
AAGGAGGGAGGGCGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCA
AATTTGAGAAAGTGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAA
AAAGAGGAAGAGCGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTA
AAACAAATACGTCGGAGAAGATCGGAAAGCGTATCACAAGGCGGGGCAGG
AATCCCAAGCACGGGTGGACCATGG
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Coding sequence (CDS) from alignment at chr5:60248..62022+

>NO05G00140.1 ID=NO05G00140.1|Name=NO05G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr5:60248..62022+ (Nannochloropsis oceanica)
ATGGAATCAGCCCTAACAATGCAAATACCACCGCTTGGGCGACGCCTTCC
GGCCGTGGTGCACGATTTTGCCAGCTATCTGCCACCCATCGACGCGGCGC
TTGACAGCCGCATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCATG
CGCCGAGCACTCGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATAC
CCTGAAGGCTGAGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATTG
ACGATTACTACCGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCAG
ACTGAGGCCGAAGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGCA
CCCCATGCCTCCGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCTC
CACAAACCTCGCACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTCC
ACTTCCCATCCCAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCGA
AGCCGTCTTGCGTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCCA
GCCCCGGGATCCATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACAC
CGCCAATCCCAACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCCT
CTTAATCGGACAAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACAG
CCACCAAAGGCCTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGCA
CCCCCTTTCAACGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCCC
ATCGCTCCTCGTGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTCA
TCGACCTCTGTGCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCTC
ATGCGAGGAAAAGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAGT
CAAGGAGCTCAAGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTCT
GCCCCCTCGTCCTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCGC
CGTGCCCGAACCCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTAC
GCCCCGCGACAAAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAGA
CGTTCGACCACGTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCGT
CCTCGCCTTTCCGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCTT
ATTCCAACAGCAATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGTG
GAAGCATGACGTATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGGC
ATGGTCAGGTTCGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGGC
CGAGCCCCGCTTGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGAC
TGACAGAGGGGGAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGGA
AGGAGGGAGGGCGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCAA
ATTTGAGAAAGTGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAAA
AAGAGGAAGAGCGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTAA
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Synonyms
Publications