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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:55759..59286 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00130.2 vs.
Match: EWM28384.1 (expulsion defective family member (exp-2) [Nannochloropsis gaditana]) HSP 1 Score: 640.2 bits (1650), Expect = 4.600e-180 Identity = 316/416 (75.96%), Postives = 362/416 (87.02%), Query Frame = 0
Query: 12 EDLADWRAEHSYRTIIFMTSDHMYYSFYAWLYGFVMCAATAISCIAFVLSTMPEFTYIPHNCKHPICVPGAPGAVCDQVICFPEPLPYLDKTETITLCLFIFDYLLRVCTVHAVPQRLIYWDGRRINEDTTRGKPQPSAASKTFHYLMHSHQVIDLLVILPFFLTYFISSVDVVHWRLLRITRVLRVLKLSRYSSGGELVWNTLKNSGPSLILLTLFTLVLCFVMGALVFYFEGGVYRVTPEHPEGAFYRPALEGGEEVTPFTSVPVSAYWVIVTATTVGYGDLYPTSGPGQFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDEDEKAVEEQLRKEEIEKQKANERPTAVSAAEAKWKRKHVRKLMEMREFIHEQMKQATPLFETMWEEFVAKHLLERLQEYE-RQPMRDGTQSV 427
ED+ DWRAEH++RT++FMT+DHMYYS+YAWLYG VMC T ISCIAFVLSTMP F Y P C PIC P PGA CD+VIC+P P YL +TE +TL LFIFDYL+R+ TVHAVPQRLIYWDGRRINED +RG QPS KTF Y +H+ QVIDLLVILP+ L Y IS+++++HWRLLRITRVLRVLKLSRY GGELVWNTLKNSGPSL+LLTLFT+VL F+MGAL FY+EGG+++VT HPEGAF+R ALEGGEEV+PFTSVPVSAYWVI+TATTVGYGDL+PTSGPG+FVAAASAYCGIVFLSLPIAIVVKQFNIAYDKD D+KAVEEQL+KEE EKQKA E PTA+SAAEAKWKRKHVRKL EMREFI QM++ATP+FETMWEEFVAKHL+ERLQ++E P + G++SV
Sbjct: 18 EDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKQKAGEEPTALSAAEAKWKRKHVRKLTEMREFIRMQMEEATPIFETMWEEFVAKHLMERLQDHEGEMPRQRGSRSV 433
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00130.2 ID=NO05G00130.2|Name=NO05G00130.2|organism=Nannochloropsis oceanica|type=mRNA|length=2629bp
AGGAGCAGCACCTGCGGCAGCAGCAATATAAAGGTATTCACCACCATCAC
GATAAATAAAGCAAAAGCAATAGGAACATCGTCATCTACATCAGCAGAAG
CAGCTGCTGCTGCAGCAGCAACAGAAGTGATAATTCGACAAAGAGCGCCA
AGGGTAAGGGTGGTTGTCTTTTGCTGTGATTACCTAGGATATCCACGGGC
CGACAAAGTCATCCAAGGGAGGAGGAGATGAAGTACTCATATTAAGGGAA
TTATCACTAAAATTCGTCGTCGTCGATATATAGAAAGAGTGTAGGAAATC
TTTACAATCTAAAAGCATATGATGGGGACAGTACGCTAGAATGAATACAT
GTGTTCACATCCGAATATGCCCGACTGGTCAAACTAGACATATTAAAGGA
CAAAATGGGGTATTGAAGAGAGCTAATGAGCATCAAAGCCTGCTTTAAAT
GCGCGCGCGTACACACACACACACACATGTGTGACGTAGCAGAGAACACC
CTGGCAGGCGAAGTGAAGCAGCTGAGAGCGCGGTCATTTGATTGAGCAGT
ATAAGAGAGCCAAATGGAAAAAGCACCGCGGGCAACTACCTCCAAGAAAA
CATACGCATTATACGCTTTTTTTTATGTCGCCGCTTCCTGTCCTGCGTCA
ACCGAAATCCTCTTGAGCAATCATGCCGCCAGCCCCACTTCTCCGAGACC
AAATTCGACAAGGTCAAGATCAAGATCAAGTGTTGTTAATTAATTAACCG
ACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGTACG
CCACGCTTGGGGATCCTAGAGAAAAACACCCGTAAGTTCTCTTTCTGCTT
CTTTGTTTTGTCCCCACCATTATGTGAGCCTCTCTTATCCCCCCCTCCAC
TTTATTAGCCTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGGGGT
GTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAGAGC
GTGCAGAGCTGGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCATGTG
CGGCTGCCCGCCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGGCAA
TGGGGTTAGAAAACGACGACCAAGCTTTGTGCAGCAGATGACACGATCAC
TGTCACGAGTTTTGACACCGGAGGACCTGGCCGACTGGCGCGCGGAGCAT
TCCTACCGCACGATCATCTTCATGACCTCAGACCACATGTATTACTCGTT
CTATGCCTGGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCT
GCATCGCTTTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCAC
AACTGCAAACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGA
CCAAGTAATTTGCTTCCCGGAGCCTCTCCCCTACCTTGACAAGACCGAGA
CGATAACCCTCTGCCTTTTCATATTCGACTACCTCCTTCGAGTGTGCACC
GTCCACGCCGTCCCTCAGCGCCTCATTTACTGGGATGGCCGCCGTATCAA
CGAGGACACTACGCGGGGAAAGCCTCAACCCTCCGCGGCAAGCAAGACTT
TTCACTACTTGATGCACTCGCACCAAGTCATCGACCTGCTCGTCATCCTC
CCCTTCTTCCTCACATACTTCATCTCGTCGGTAGACGTGGTCCACTGGCG
ACTCCTCCGGATTACGCGGGTATTGCGAGTGCTGAAACTAAGCCGGTATT
CGTCCGGGGGCGAACTAGTGTGGAACACACTCAAGAACTCAGGTCCATCG
CTGATACTGCTGACTCTCTTTACGCTTGTTCTTTGCTTTGTGATGGGTGC
GTTGGTGTTTTATTTCGAAGGCGGCGTCTACCGGGTCACGCCCGAACACC
CTGAGGGCGCGTTTTATCGCCCGGCCTTAGAGGGAGGCGAAGAAGTCACC
CCTTTCACGTCTGTCCCTGTGTCAGCTTATTGGGTTATTGTCACTGCTAC
TACCGTCGGATACGGTGATCTCTATCCTACTTCGGGCCCAGGACAATTCG
TGGCTGCAGCTTCGGCCTACTGCGGCATCGTATTCCTCTCGTTGCCCATC
GCCATCGTGGTCAAACAGTTTAACATCGCTTACGACAAGGATGAAGACGA
GAAGGCCGTCGAAGAGCAACTAAGAAAAGAGGAGATCGAGAAGCAAAAGG
CGAACGAGCGCCCTACCGCTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGG
AAACACGTGCGGAAATTAATGGAAATGCGGGAGTTTATTCACGAACAAAT
GAAGCAGGCAACCCCGCTTTTCGAGACGATGTGGGAGGAATTTGTTGCCA
AGCACTTACTGGAACGCTTGCAGGAATATGAAAGACAACCGATGCGGGAC
GGAACGCAATCTGTGTAGAGTGGGAAGGAAAGAGAGAATGAGATAGCGTC
CGATAGACTTGTTCATACCAAAGAAAGAGAGGGGATCGCAGATAGCAGGG
AAATGGACAGGTAGGATGGAGAAATTGATCCTCATTTTAAAAGATGATGA
ATGTGCAGGAGCGTGACAAGGAAACTGAATGGAAAAAGAAGAAAGATGCA
AAGGACAATGAAATCGATGGGCATATTTT back to topprotein sequence of NO05G00130.2 >NO05G00130.2-protein ID=NO05G00130.2-protein|Name=NO05G00130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MTRSLSRVLTPEDLADWRAEHSYRTIIFMTSDHMYYSFYAWLYGFVMCAA
TAISCIAFVLSTMPEFTYIPHNCKHPICVPGAPGAVCDQVICFPEPLPYL
DKTETITLCLFIFDYLLRVCTVHAVPQRLIYWDGRRINEDTTRGKPQPSA
ASKTFHYLMHSHQVIDLLVILPFFLTYFISSVDVVHWRLLRITRVLRVLK
LSRYSSGGELVWNTLKNSGPSLILLTLFTLVLCFVMGALVFYFEGGVYRV
TPEHPEGAFYRPALEGGEEVTPFTSVPVSAYWVIVTATTVGYGDLYPTSG
PGQFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDEDEKAVEEQLRKEEI
EKQKANERPTAVSAAEAKWKRKHVRKLMEMREFIHEQMKQATPLFETMWE
EFVAKHLLERLQEYERQPMRDGTQSV* back to topmRNA from alignment at chr5:55759..59286- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00130.2 ID=NO05G00130.2|Name=NO05G00130.2|organism=Nannochloropsis oceanica|type=mRNA|length=3528bp|location=Sequence derived from alignment at chr5:55759..59286- (Nannochloropsis oceanica)
AGGAGCAGCACCTGCGGCAGCAGCAATATAAAGGTATTCACCACCATCAC
GATAAATAAAGCAAAAGCAATAGGAACATCGTCATCTACATCAGCAGAAG
CAGCTGCTGCTGCAGCAGCAACAGAAGTGATAATTCGACAAAGAGCGCCA
AGGGTAAGGGTGGTTGTCTTTTGCTGTGATTACCTAGGATATCCACGGGC
CGACAAAGTCATCCAAGGGAGGAGGAGATGAAGTACTCATATTAAGGGAA
TTATCACTAAAATTCGTCGTCGTCGATATATAGAAAGAGTGTAGGAAATC
TTTACAATCTAAAAGCATATGATGGGGACAGTACGCTAGAATGAATACAT
GTGTTCACATCCGAATATGCCCGACTGGTCAAACTAGACATATTAAAGGA
CAAAATGGGGTATTGAAGAGAGCTAATGAGCATCAAAGCCTGCTTTAAAT
GCGCGCGCGTACACACACACACACACATGTGTGACGTAGCAGAGAACACC
CTGGCAGGCGAAGTGAAGCAGCTGAGAGCGCGGTCATTTGATTGAGCAGT
ATAAGAGAGCCAAATGGAAAAAGCACCGCGGGCAACTACCTCCAAGAAAA
CATACGCATTATACGCTTTTTTTTATGTCGCCGCTTCCTGTCCTGCGTCA
ACCGAAATCCTCTTGAGCAATCATGCCGCCAGCCCCACTTCTCCGAGACC
AAATTCGACAAGGTCAAGATCAAGATCAAGTGTTGTTAATTAATTAACCG
ACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGTACG
CCACGCTTGGGGATCCTAGAGAAAAACACCCGTAAGTTCTCTTTCTGCTT
CTTTGTTTTGTCCCCACCATTATGTGAGCCTCTCTTATCCCCCCCTCCAC
TTTATTAGCCTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGGGGT
GTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAGAGC
GTGCAGAGGTGAGCATGGAGAGTAAGAGGGCGACAGTTGGAAATGCGCAG
TATAGATGAAAATGACCGCCACCGTTACATCCACGTGCTCCCTGTGTGTC
TTAATCTGCCTGTGTTAAAATGAGAAGTGTAAGCCATGGCATCATACTTT
CCTCCCCCCCATTTACTCATTTCGTCCATATTTTAAACGGCACATCAAAG
CTGGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCC
CGCCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTA
GAAAACGACGACCAAGCTTTGTGCAGCAGATGACACGATCACTGTCACGA
GTTTTGACACCGGTACGTAGGGAAGGAGATAGGAAGGGAAAGTGGAAGGG
GAAAAGGGGGGAAGGGGGGATTGGAGACCAAGCCTTTGAAATAGAAGTAA
ACATACGCGTCGATAAAATATGAGTGAATTAAAACTGACAACAGAAATGT
TTTACGCTTTCCTCTTCCTCCTTTCTTTTTTTCTTTTTTCGCAGGAGGAC
CTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCATGAC
CTCAGACCACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGAGGAAGT
GGAAGCGAGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGACAATTTA
CCTGATTTGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATCAGGCCT
GGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGCATCGCT
TTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCACAACTGCAA
ACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAGTAA
TTTGCTTCCCGGAGCCTCTCCCCTACCTTGACAAGACCGAGACGATAACC
CTCTGCCTTTTCATATTCGACTACCTCCTTCGAGTGTGCACCGTCCACGC
CGTCCCTCAGCGCCTCATTTACTGGGATGGCCGCCGTATCAACGAGGACA
CTACGGTACGTCCATCACCCTCCTGCTGGCCCTCTCTCTTTATCTCATTG
GATTCTTCAACACCCCTCCCTCCCTCCTTTTCTCTTTCCCCACACTACTT
ACTGCGGAGTGGGGAAACCACGACCACCCCATTATCTCGAGGCAGGCCTA
AGACTGAATTATTGACCTGCTGCTCACCACATCTGAAAATCTCCCTCTCT
CCCTTCCTCGTTTACTTGTTCAGCGGGGAAAGCCTCAACCCTCCGCGGCA
AGCAAGACTTTTCACTACTTGATGCACTCGCACCAAGTCATCGACCTGCT
CGTCATCCTCCCCTTCTTCCTCACATACTTCATCTCGTCGGTAGACGTGG
TCCACTGGCGACTCCTCCGGATTACGCGGTAAGGAGCGAGGGAGGGAGGG
AGGGAAGGGAGGAAGGGGAGACGGAGCAAGGAATAAATGTCTACTTTCTG
TGATGAAATTGGGGTGAATTAGGGGAGCGAATACGAGAAGAGACAAATGA
ATTAAAGAAAGGAAGGATTATTCAGACACCACTAATGGATATATTGGATA
TCACACGAAACAATCAGGGTATTGCGAGTGCTGAAACTAAGCCGGTATTC
GTCCGGGGGCGAACTAGTGTGGAACACACTCAAGAACTCAGGTCCATCGC
TGATACTGCTGACTCTCTTTACGCTTGTTCTTTGCTTTGTGATGGGTGCG
TTGGTGTTTTATTTCGAAGGCGGCGTCTACCGGGTCACGCCCGAACACCC
TGAGGGCGCGTTTTATCGCCCGGCCTTAGAGGGAGGCGAAGAAGTCACCC
CTTTCACGTCTGTCCCTGTGTCAGCTTATTGGGTTATTGTCACTGCTACT
ACCGTCGGATACGGTGATCTCTATCCTACTTCGGGCCCAGGACAATTCGT
GGCTGCAGCTTCGGCCTACTGCGGCATCGTATTCCTCTCGTTGCCCATCG
CCATCGTGGTCAAACAGTTTAACATCGCTTACGACAAGGATGAAGACGAG
AAGGCCGTCGAAGAGCAACTAAGAAAAGAGGAGATCGAGAAGCAAAAGGC
GAACGAGCGCCCTACCGCTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGA
AACACGTGCGGAAATTAATGGAAATGCGGGAGTTTATTCACGAACAAATG
AAGCAGGCAACCCCGCTTTTCGAGACGATGTGGGAGGAATTTGTTGCCAA
GCACTTACTGGAACGCTTGCAGGAATATGAAAGACAACCGATGCGGGACG
GAACGCAATCTGTGTAGAGTGGGAAGGAAAGAGAGAATGAGATAGCGTCC
GATAGACTTGTTCATACCAAAGAAAGAGAGGGGATCGCAGATAGCAGGGA
AATGGACAGGTAGGATGGAGAAATTGATCCTCATTTTAAAAGATGATGAA
TGTGCAGGAGCGTGACAAGGAAACTGAATGGAAAAAGAAGAAAGATGCAA
AGGACAATGAAATCGATGGGCATATTTT back to topCoding sequence (CDS) from alignment at chr5:55759..59286- >NO05G00130.2 ID=NO05G00130.2|Name=NO05G00130.2|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr5:55759..59286- (Nannochloropsis oceanica)
ATGACACGATCACTGTCACGAGTTTTGACACCGGAGGACCTGGCCGACTG
GCGCGCGGAGCATTCCTACCGCACGATCATCTTCATGACCTCAGACCACA
TGTATTACTCGTTCTATGCCTGGCTCTATGGGTTCGTCATGTGCGCCGCC
ACGGCCATCTCCTGCATCGCTTTCGTCCTCTCCACCATGCCCGAGTTCAC
TTACATCCCGCACAACTGCAAACACCCTATTTGTGTCCCGGGTGCTCCAG
GTGCGGTCTGCGACCAAGTAATTTGCTTCCCGGAGCCTCTCCCCTACCTT
GACAAGACCGAGACGATAACCCTCTGCCTTTTCATATTCGACTACCTCCT
TCGAGTGTGCACCGTCCACGCCGTCCCTCAGCGCCTCATTTACTGGGATG
GCCGCCGTATCAACGAGGACACTACGCGGGGAAAGCCTCAACCCTCCGCG
GCAAGCAAGACTTTTCACTACTTGATGCACTCGCACCAAGTCATCGACCT
GCTCGTCATCCTCCCCTTCTTCCTCACATACTTCATCTCGTCGGTAGACG
TGGTCCACTGGCGACTCCTCCGGATTACGCGGGTATTGCGAGTGCTGAAA
CTAAGCCGGTATTCGTCCGGGGGCGAACTAGTGTGGAACACACTCAAGAA
CTCAGGTCCATCGCTGATACTGCTGACTCTCTTTACGCTTGTTCTTTGCT
TTGTGATGGGTGCGTTGGTGTTTTATTTCGAAGGCGGCGTCTACCGGGTC
ACGCCCGAACACCCTGAGGGCGCGTTTTATCGCCCGGCCTTAGAGGGAGG
CGAAGAAGTCACCCCTTTCACGTCTGTCCCTGTGTCAGCTTATTGGGTTA
TTGTCACTGCTACTACCGTCGGATACGGTGATCTCTATCCTACTTCGGGC
CCAGGACAATTCGTGGCTGCAGCTTCGGCCTACTGCGGCATCGTATTCCT
CTCGTTGCCCATCGCCATCGTGGTCAAACAGTTTAACATCGCTTACGACA
AGGATGAAGACGAGAAGGCCGTCGAAGAGCAACTAAGAAAAGAGGAGATC
GAGAAGCAAAAGGCGAACGAGCGCCCTACCGCTGTGAGTGCTGCAGAAGC
GAAGTGGAAGAGGAAACACGTGCGGAAATTAATGGAAATGCGGGAGTTTA
TTCACGAACAAATGAAGCAGGCAACCCCGCTTTTCGAGACGATGTGGGAG
GAATTTGTTGCCAAGCACTTACTGGAACGCTTGCAGGAATATGAAAGACA
ACCGATGCGGGACGGAACGCAATCTGTGTAG back to top
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