NO04G05280.1, NO04G05280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05280.1
Unique Name	NO04G05280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1667
Alignment location	chr4:1495019..1498485 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1495019..1498485 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G05280.1 vs.
Match: CBN76648.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 4.700e-17
Identity = 74/186 (39.78%), Postives = 116/186 (62.37%), Query Frame = 0

Query:  106 VIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEEREALEREGGGEEWEEEWDEDDGEGGGSSEEEEEEEGLLKREEGYWSDDEGDSEASDGEVVWEDEDEEDEEDDKDIEWDEDDIE 292
            ++R G+ IKT D +DD +R +I+VVDV+ SPDL+SA+V +S++G+ +EKREAY W V N KAIR AL  E+K  +  P+LFFK  D+ A  D+ +L+D+++          G E+  E    DDGE     EE E  EG+ + ++ +  D + D  A+D    ++D+D++DE+   D++ +E D E
Sbjct:  102 ILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVS----------GDEDGNEAALRDDGE-----EEIEGFEGVTE-DDFFTFDFDEDGNAAD----FDDDDDDDEDVGFDLDEEERDGE 267

The following BLAST results are available for this feature:

BLAST of NO04G05280.1 vs.

BLAST of NO04G05280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN76648.1	4.700e-17	39.78	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05280	NO04G05280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05280.1	NO04G05280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05280.1.cds1	NO04G05280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds2	NO04G05280.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds3	NO04G05280.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds4	NO04G05280.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds5	NO04G05280.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds6	NO04G05280.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds7	NO04G05280.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds8	NO04G05280.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds9	NO04G05280.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds10	NO04G05280.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds11	NO04G05280.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05280.1.cds12	NO04G05280.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1495019..1498485-
coding sequence from alignment at chr4:1495019..1498485-

mRNA sequence

>NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp
ACCACAGGTCAAGCTTATCCTACAGTGACGGCAGGCCTTGCAGGAGCTCT
CACCTGAGCAGTCGACCAGCCATGAGCGCACCAGCGGACCGCCTCCTATC
GCCCGCCTTCTCTTGCAAGCGGCAAAGGAAGCGGATAGCATCAAGAGCCT
ACACCACCGTCGCTCCCGCGACCGCTCTTCTTGCTCTCCTCGCAGTCATT
CTCGTCCTCCAACCCGTCCAAATGCTAGTGTGGGCCTTCCTTCCCCCCGT
CACAATCCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCCTCCATCAGCCGCTCCCCCCACCCTCGCCTCTGTTCCTCCCGTCCT
CCCGTTTGTCTACCTTACATCTTGGCCCGCTCCGACGTAATTCGCAAGGG
CTACCCCATCAAAACCACGGACCTGCTCGACGATCGGATCCGCAGCAAAA
TTTCAGTGGTAGATGTCGAGTGTTCTCCGGACCTGAAGAGCGCACGCGTG
GAGGTGTCCATCTTCGGCGAGACGGTGGAAAAACGCGAGGCCTACATCTG
GTTAGTCAACAACGCCAAGGCCATCCGCTTTGCCCTGGCCCAGGAGATGA
AGGACTTCAGACACACACCTCAGCTCTTTTTCAAGCAGGGTGACCTCGGC
GCAGGCTCGGACATGTTCAGCCTCCTAGACAAGCTGGCGGAGGAGCGAGA
GGCCCTCGAGAGGGAGGGCGGGGGGGAGGAATGGGAGGAGGAGTGGGACG
AAGACGACGGGGAAGGAGGCGGCAGCAGTGAGGAAGAGGAGGAGGAGGAG
GGGCTGCTGAAGCGCGAGGAAGGATATTGGAGCGACGACGAAGGGGACTC
GGAGGCCAGCGACGGGGAAGTCGTGTGGGAGGATGAGGACGAAGAGGACG
AGGAAGACGATAAAGACATCGAGTGGGACGAGGACGACATTGAATGGGAG
GACGAAAAGGAAGAGAAGCAAGCCCCTCTCACTGCCGATGAACGGCGCAA
ACAAATTAAGAAAGATCGCGAGGATGCCGAGGCCTTGATCGGTCTTTTGG
AGCGGATGACCAGTCAGGCCATCGCCGAGGGGCCGCAGGGCAAGGAGGAA
GAGAAGGGCGAGATCGTTGTTCCCCTCGTCCAGCGCAAGCAAAAGAAGAG
GAAAACCGGTGCCTTCTCCTCCATTCCCTCCCGAGTCGATGTGGGAGGGG
GAGGGCTGGGCGACAGGCCGGCCGGCTGGACGGCCTCGCAGCCCTACGTG
CCCGGCGCCTTGGAGGCAGAGCTCGAGGCTGAGATTGAGGCCCTTCGTCT
GGCTGGCGAGGAGGAGGAGAAGGGGGCGGGCATGGACGGGGAGGCCTGGG
GGGAGGAGGACGACGATGATGAGGACGACGATGAGGACGACGAGGACTAT
GAGGAGGAGGCCGGGTTGGGGGAGGAGGAGGAGGAGGAAGGGGAGGAGGG
GGGGCTGATTGACTGGCCGGTGGAGGGGGAGGGCGAGGAGGAGGACTGGG
GGGCCTTGACGGCGGACGGGTGGATAGACATGGACGCCATCTTGGACGAA
GCGGAGGGCCAAGATGACATTGATGCCCTGCTCAAGAAGCTGGAGGGTAT
GCCGGCCAGCGGGGAGGATGGCGACGAGGAGGATGACGGCGACAACGAGT
TAGGGAGGAAGGGATAG

protein sequence of NO04G05280.1

>NO04G05280.1-protein ID=NO04G05280.1-protein|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MSAPADRLLSPAFSCKRQRKRIASRAYTTVAPATALLALLAVILVLQPVQ
MLVWAFLPPVTIPSSSSSSSSSSFSSSSSISRSPHPRLCSSRPPVCLPYI
LARSDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGE
TVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFS
LLDKLAEEREALEREGGGEEWEEEWDEDDGEGGGSSEEEEEEEGLLKREE
GYWSDDEGDSEASDGEVVWEDEDEEDEEDDKDIEWDEDDIEWEDEKEEKQ
APLTADERRKQIKKDREDAEALIGLLERMTSQAIAEGPQGKEEEKGEIVV
PLVQRKQKKRKTGAFSSIPSRVDVGGGGLGDRPAGWTASQPYVPGALEAE
LEAEIEALRLAGEEEEKGAGMDGEAWGEEDDDDEDDDEDDEDYEEEAGLG
EEEEEEGEEGGLIDWPVEGEGEEEDWGALTADGWIDMDAILDEAEGQDDI
DALLKKLEGMPASGEDGDEEDDGDNELGRKG*

mRNA from alignment at chr4:1495019..1498485-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3467bp|location=Sequence derived from alignment at chr4:1495019..1498485- (Nannochloropsis oceanica)
ACCACAGGTCAAGCTTATCCTACAGTGACGGCAGGCCTTGCAGGAGCTCT
CACCTGAGCAGTCGACCAGCCATGAGCGCACCAGCGGACCGCCTCCTATC
GCCCGCCTTCTCTTGCAAGCGGCAAAGGAAGCGGATAGCATCAAGAGCCT
ACACCACCGTCGCTCCCGCGACCGCTCTTCTTGCTCTCCTCGCAGTCATT
CTCGTCCTCCAACCCGTCCAAATGCTAGTGTGGGCCTTCCTTCCCCCCGT
CACAATCCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCCTCCATCAGCCGCTCCCCCCACCCTCGCCTCTGTTCCTCCCGTCCT
CCCGTTTGTCTACCTTACATCTTGGCCCGCTGTACGGTGGCAGGGATGAT
GAGAAGGCCTTTAGAAAGGTACAGCAAAGCAAGCGGCAGCTAAGGGTGGG
CCGTTTGTTGCAGTCCACGGTAGCCGACGTAATTCGCAAGGTATACATCG
AAGAGCGAGCGAGAGGGGAAGAGGGAGGGAGAGGAAAGATGGGAGGGAGC
AAGTCTTCTGATTGTCTGTTAAGACGTCTTCTGAATTGCAGCAGAAGAAA
TTGTCAAATTCGTCAACGCTAGTAATTCTTTCCTCCCTCCCTCCCACCCT
CCCTCCCTCCCTCCCTTCTTCCTCCTTTCACCCTCCTTTCATCTAGGGCT
ACCCCATCAAAACCACGGACCTGCTCGACGATCGGATCCGCAGCAAAATT
TCAGTGGTAGATGTCGAGTGTTCTCCGGACCTGAAGAGCGCACGCGTGGA
GGTGGGGCGGGAGGGAAAGAGATAGGGAGAGAGGGAGGGAGGGAGCGTGG
GTGAAGAGGCAAGAAAGGATGATGTCATCGAATGCCTCACGTGTGTCCCT
TCCTCATTCCCTGCTTCTCTCCCTCTCTCCGTAGGTGTCCATCTTCGGCG
AGACGGTGGAAAAACGCGAGGCCTACATCTGGTTAGTCAACAACGCCAAG
GTACAGAAGCCTTTTCCCTCCCCTCCCCCCTCCTTCCTTCCATGCCCCCT
TCCTTTCCTTCTCCACAGCAGGTTCTCACCTCCCCCCCGACCCTCCTCTC
TGTCTCTCTCTCCAGGCCATCCGCTTTGCCCTGGCCCAGGAGATGAAGGA
CTTCAGACACACACCTCAGCTCTTTTTCAAGCAGGGTGACCTCGGTACGT
CCCTCCCTGGCCCCCTCCCGCTAAGCCATCTCTCCGGCTCCTACGTCCTC
CCCTTCCCTCTTCCTCCTATTTCGTTTCTCGGTTACCTCTCCTCTCCTCG
GCCGTCGTCGCACTCACCTATGCCCATCTCCGCTCCCGCCCTCCCCCCGC
TCTCCCCCCTCCCTCCCCCCTCTTCCTCAGGCGCAGGCTCGGACATGTTC
AGCCTCCTAGACAAGCTGGCGGAGGAGCGAGAGGCCCTCGAGAGGGAGGG
CGGGGGGGAGGAATGGGAGGAGGAGTGGGACGAAGACGACGGTAAGGGAG
GGAGGGAGTGAGGGAGGGGGGGCGGAAGGAAGCGCGGGTGTATCTGCCTC
TTGGACGGAATCGAAGACTGTTGACGTTATCGCTGAATGTCGCTGTGTCT
GCCTCCTCCCTCTCTTATGTCGTCGTTGCTAGCTGTGTTTACCTCCTCCC
TCTTTTATCGTACCCGGCAGGGGAAGGAGGCGGCAGCAGTGAGGAAGAGG
AGGAGGAGGAGGGGCTGCTGAAGCGCGAGGAAGGATATTGGAGCGACGAC
GAAGGGGACTCGGAGGCCAGCGACGGGGAAGTCGTGTGGGAGGATGAGGA
CGAAGAGGACGAGGAAGACGATAAAGGTGCGTGCGTCCCTGTCGGTGGTC
CTGCGGGAGAGTTGGCTGCTTGTCCAGCAGGCCCGCCTTTCGTCCGCATC
CTGACCTCCCCTCTCTTCTTCCCTCTCTCCATTCCCTCCTCCCGGCAGAC
ATCGAGTGGGACGAGGACGACATTGAATGGGAGGACGAAAAGGAAGAGAA
GCAAGCCCCTCTCACTGCCGATGAACGGTCCGTCCCTCCCTCCCCCCCCC
CCTCCCTTCCTCCCTCCCTGGACTTATTTCCTTCCATTCCTGCTTCTCTC
CCCTCCTTCCTTCCTGCCTCCCTGCCTCCTCCAGGCGCAAACAAATTAAG
AAAGATCGCGAGGATGCCGAGGCCTTGATCGGTCTTTTGGAGCGGATGAC
CAGTCAGGCCATCGCCGAGGGGCCGCAGGGCAAGGAGGAAGAGAAGGGCG
AGGTATGTGGCTTCTGTGGTCCCTTTGTTGTTTGTATTTCATTCATTTTT
CCCTGTCCACCCCTTGTCTCTCTTCCTTCCCCTCTCTTCCTTCCTCCCGC
TTGTTTTCTTGGTCAAAGTACTCCCACCAGTCAACGCCTCGTCTCTCTCT
CCCTTCTCTCTCCCTCCCTTCCTCACTGCAGATCGTTGTTCCCCTCGTCC
AGCGCAAGCAAAAGAAGAGGAAAACCGGTGCCTTCTCCTCCATTCCCTCC
CGAGTCGATGTGGGAGGGGGAGGGCTGGGCGACAGGCCGGCCGGCTGGAC
GGCCTCGCAGCCCTACGTGCCCGGTGGGAAGAGAGGGAGAGGGAGGGAGG
GAGGGAAGGCAGGCGCAATGGCCTGATGATGTTGCTTTTGCTGTCTGTGG
CTTGTTCTCTGATCTTGTCTCCCTTCTTTCCCTTTCTCTCCCGCTTCGTC
CTCCTTCCCCCTCCCTCTCCCTCTAGGCGCCTTGGAGGCAGAGCTCGAGG
CTGAGATTGAGGCCCTTCGTCTGGCTGGCGAGGAGGAGGAGAAGGGGGCG
GGCATGGACGGGGAGGCCTGGGGGGAGGAGGACGACGATGATGAGGACGA
CGATGAGGACGACGAGGACTATGAGGAGGAGGCCGGGTTGGGGGAGGAGG
AGGAGGAGGAAGGGGAGGAGGGGGGGCTGATTGACTGGCCGGTGGAGGGG
GAGGGCGAGGAGGAGGACTGGGGGGCCTTGACGGCGGACGGGTGGATAGA
CATGGACGCCATCTTGGTACGAACGTGCGAGATAGACGAGAGTGGTGACA
CCTCGGCCCCTCCTTCCCTTACTATCTCCCTCCCTTCCTCCCCACCGTGT
TTACCTGCATGCTCGAACGAGGACAGGAGTGCCTTCTTCCCTTTCCTCCT
CCCTCTCTCCTCCGTTCTTTCGTCCGCTCTCCCTATTTGTTTCTTCTCCC
TCGCGTTTTCGTCTCTTTCAGGCTTCCTCGCTCCTTTTGTCGGCCCCGAC
TTATGCAGTGATCACGCCCCGTTCCCCAACCGCTCTCATCTCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTTCATCCTCCATGTCGTCGCCTAGGACGAA
GCGGAGGGCCAAGATGACATTGATGCCCTGCTCAAGAAGCTGGAGGGTAT
GCCGGCCAGCGGGGAGGATGGCGACGAGGAGGATGACGGCGACAACGAGT
TAGGGAGGAAGGGATAG

Coding sequence (CDS) from alignment at chr4:1495019..1498485-

>NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr4:1495019..1498485- (Nannochloropsis oceanica)
ATGAGCGCACCAGCGGACCGCCTCCTATCGCCCGCCTTCTCTTGCAAGCG
GCAAAGGAAGCGGATAGCATCAAGAGCCTACACCACCGTCGCTCCCGCGA
CCGCTCTTCTTGCTCTCCTCGCAGTCATTCTCGTCCTCCAACCCGTCCAA
ATGCTAGTGTGGGCCTTCCTTCCCCCCGTCACAATCCCATCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCATCAGCCGCTCCC
CCCACCCTCGCCTCTGTTCCTCCCGTCCTCCCGTTTGTCTACCTTACATC
TTGGCCCGCTCCGACGTAATTCGCAAGGGCTACCCCATCAAAACCACGGA
CCTGCTCGACGATCGGATCCGCAGCAAAATTTCAGTGGTAGATGTCGAGT
GTTCTCCGGACCTGAAGAGCGCACGCGTGGAGGTGTCCATCTTCGGCGAG
ACGGTGGAAAAACGCGAGGCCTACATCTGGTTAGTCAACAACGCCAAGGC
CATCCGCTTTGCCCTGGCCCAGGAGATGAAGGACTTCAGACACACACCTC
AGCTCTTTTTCAAGCAGGGTGACCTCGGCGCAGGCTCGGACATGTTCAGC
CTCCTAGACAAGCTGGCGGAGGAGCGAGAGGCCCTCGAGAGGGAGGGCGG
GGGGGAGGAATGGGAGGAGGAGTGGGACGAAGACGACGGGGAAGGAGGCG
GCAGCAGTGAGGAAGAGGAGGAGGAGGAGGGGCTGCTGAAGCGCGAGGAA
GGATATTGGAGCGACGACGAAGGGGACTCGGAGGCCAGCGACGGGGAAGT
CGTGTGGGAGGATGAGGACGAAGAGGACGAGGAAGACGATAAAGACATCG
AGTGGGACGAGGACGACATTGAATGGGAGGACGAAAAGGAAGAGAAGCAA
GCCCCTCTCACTGCCGATGAACGGCGCAAACAAATTAAGAAAGATCGCGA
GGATGCCGAGGCCTTGATCGGTCTTTTGGAGCGGATGACCAGTCAGGCCA
TCGCCGAGGGGCCGCAGGGCAAGGAGGAAGAGAAGGGCGAGATCGTTGTT
CCCCTCGTCCAGCGCAAGCAAAAGAAGAGGAAAACCGGTGCCTTCTCCTC
CATTCCCTCCCGAGTCGATGTGGGAGGGGGAGGGCTGGGCGACAGGCCGG
CCGGCTGGACGGCCTCGCAGCCCTACGTGCCCGGCGCCTTGGAGGCAGAG
CTCGAGGCTGAGATTGAGGCCCTTCGTCTGGCTGGCGAGGAGGAGGAGAA
GGGGGCGGGCATGGACGGGGAGGCCTGGGGGGAGGAGGACGACGATGATG
AGGACGACGATGAGGACGACGAGGACTATGAGGAGGAGGCCGGGTTGGGG
GAGGAGGAGGAGGAGGAAGGGGAGGAGGGGGGGCTGATTGACTGGCCGGT
GGAGGGGGAGGGCGAGGAGGAGGACTGGGGGGCCTTGACGGCGGACGGGT
GGATAGACATGGACGCCATCTTGGACGAAGCGGAGGGCCAAGATGACATT
GATGCCCTGCTCAAGAAGCTGGAGGGTATGCCGGCCAGCGGGGAGGATGG
CGACGAGGAGGATGACGGCGACAACGAGTTAGGGAGGAAGGGATAG

Synonyms

Publications