NO04G05210.1, NO04G05210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05210.1
Unique NameNO04G05210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2188
Alignment locationchr4:1462215..1464402 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1462215..1464402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05210.1 vs.
Match: XP_005856023.1 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526]; EKU20337.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 287.0 bits (733), Expect = 1.300e-73
Identity = 173/299 (57.86%), Postives = 203/299 (67.89%), Query Frame = 0 
Query:    5 VRRSVHQRLYSTPSHFKTANLRPYLATNTPCVCSYSSSTSP-PTPPALLSSLFDRAPSPRPPLFPLPPSSISFLREPSEFYHTLFESISRCRDRLTLSALYLGHGPMEQALVQHITAACAKYPSLQVHILLDHSRGTRGHSHHASSLTTLAPLLSL----PSFSS--PNVRVSLFRMPQLSGPLARRFLPSPVNEAVAVSHVKVMAFDDEEILITGANLSQDYFTTRQDRYVHIRGGGGG-GGREGGRGGGPPESLACFYHELIETLGRYAVSPLVALSQEHRSVV-DFQALKTELTDL 295
            +RR  H+ L S           P +  +T    S  SST P P+P A LSSL + A +PR PLFPL  SS+SFL +P  FY TL ++I+R  DR+TLSALYLGHGPMEQALVQHI AAC K P+L+V ILLDHSRGTRGH    SSLTTLAPLLSL    PS +S  P   V+L RMPQLSGP ARRF+PSP+NE +AVSHVK +AFDDEEIL+TGANLS DYF+ RQDRYVH+RG      G +GG   G   SL  FYH L+ETL  + +SP  AL+   + VV DF ALK  L  L
Sbjct:   29 LRRRQHRNLLSASCLTLKPRSPPTVFMSTTTTSSSRSSTFPSPSPHAFLSSLLENAHAPRTPLFPLRASSVSFLPDPPAFYQTLLDAIARSHDRITLSALYLGHGPMEQALVQHILAACHKKPNLRVQILLDHSRGTRGHRQGTSSLTTLAPLLSLTRTRPSSTSLQPQAHVALLRMPQLSGPWARRFIPSPLNEVLAVSHVKALAFDDEEILLTGANLSHDYFSRRQDRYVHVRGPWPNFSGADGG--DGRLASLPLFYHGLVETLMPFGLSPAQALAPASQGVVRDFGALKVALGGL 325
The following BLAST results are available for this feature:
BLAST of NO04G05210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856023.11.300e-7357.86CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05210NO04G05210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05210.1NO04G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05210.1.cds1NO04G05210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05210.1 ID=NO04G05210.1|Name=NO04G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp
CTCCTACATGCGCTATCGCCCCGCCACGCCCCTAAACCCAACACGCAGCA
CATCCAATTACCACCGCACAACATCACACTGACACACATAGAGTAATAGC
TACGTTCTGCTGCCCTTGGTGCACCTATACGGGAGGACCGCTGCCTGTAC
TATTATTTTCGCCTCCATTTGCCTGCCGACTCCCTTGATTCAACTGATGA
TTCCCTGCGTCCGCCGCTCCGTACATCAGCGCCTCTACTCTACCCCCAGC
CACTTCAAGACAGCCAATCTCCGTCCCTACTTAGCTACCAACACCCCTTG
TGTTTGCTCCTACTCTTCGTCAACATCACCTCCCACTCCCCCAGCCCTCC
TGTCTTCCCTCTTCGACCGTGCCCCGTCCCCTCGTCCCCCTCTTTTCCCC
CTCCCCCCTTCTTCCATCTCCTTCCTCCGCGAGCCCTCCGAATTCTACCA
CACCCTCTTCGAGAGCATCAGTCGCTGTCGGGACCGCCTGACCCTCTCGG
CGCTCTACCTTGGACATGGCCCCATGGAACAAGCCCTCGTCCAGCACATC
ACCGCCGCTTGCGCCAAGTACCCCTCCCTGCAAGTCCACATCCTCCTCGA
TCATTCCCGCGGTACCCGCGGCCATAGTCATCACGCCTCCTCCCTTACGA
CCCTCGCCCCCCTCCTCTCCCTCCCCTCCTTTTCCTCCCCAAACGTCCGC
GTCTCCCTCTTCCGCATGCCCCAGCTTTCTGGCCCTCTTGCCCGACGCTT
CCTCCCAAGTCCTGTGAACGAAGCCGTGGCCGTCTCTCACGTCAAGGTCA
TGGCGTTTGACGACGAGGAGATCTTAATCACAGGAGCCAATTTATCGCAA
GATTATTTTACCACCAGGCAGGATCGCTACGTTCATATACGAGGGGGAGG
GGGAGGAGGAGGAAGAGAGGGAGGAAGGGGGGGAGGGCCGCCTGAGAGTC
TGGCTTGTTTCTACCACGAGTTAATTGAAACGCTAGGGCGTTATGCAGTC
TCCCCTCTCGTAGCTCTGAGTCAAGAACATCGGAGCGTCGTCGACTTCCA
AGCGCTCAAAACCGAACTAACGGACCTCTTTTCCTCCACTTCGCCCTCCC
TCCCTCCGTCTTTCTCGGACGAGCACGTCTGCTGGGCCATGCCCACCGTT
CAATGTGGCCCTCTGGGACTCCGACTTGACCAAACTCTCCTCCACGCCCT
CCTTTCCGCCTCCCCCTCCCCCTCCTCGGCCTCGCAGCACATGAGCCTTG
CCACGGCCTACCTCAACCCTCCCCTGTCCTTCCTCGAGGACCTACAGACG
TGGCAACAGGGAGGGACGGAGGAAGGGACAGAAGGAGGGCTCCAAGGAGA
GCAACAATGTAATGAAACGGGGAGGAAGAGAGGGAGGGAGAGAAGACATC
TGAGCATTCTATGTCCTTCGGCTGAGACGCACGGGTTCGCCGGTGCCCGA
GGCATCAAAGCCTTCATTCCCCTGGCATACGCCCTCCACGAACAGCGCGT
CCGCAAACACTTTCGCCCCTCCCTCCCTCCCTCCCTTCCTCTCTCCCTCT
ATCGATACACTCGCCCGGGCTGGACCTTCCATGGGAAGGGGCTGTGGCTG
CTTGAGGGGGAGGAAGAGGGGGAGGGAGGGAGGGAGGGAGAGGGGGTGGC
CTTGACGGTGGCGGGGAGTTCGAATTACGGGCATCGGTCGTTTGAGCGTG
ATTTGGAGTCGCAGGTGTGGCTGGTGAGCGCGGATGGAGGGCTGAAGGAG
AGGATGAGGGAGGAGAGGGCGTCCTTGCTTAGAGAGTGCTCTTCGGTAGG
GCAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGAAGAGGAGGAAGCGCTGT
TGAGGGGTCATTGGAAGGTATGGGCCCCCACGTTGACGACGTGGACGCAG
GGGCTACTGTGAGGGAGGGAGCGAGGGAGGGGCAGAGGGAGGGAGGGAAG
GTGGGAGGGGTGGGACTGACATGGTGGATGATTTAAGACACTGAGAGTGA
AAGAGACAATCGATTGGAAGGAGAGTAACAAGATAATGACAGTAAAGAGA
GAGAGAGTAAAGAGAGAGTGCGCAGAGAGAGTAGAGAGAGGGAGAGTAGA
GAAAGAGGACTACAGGTGCGAGGAACAAATGCATATGTCAACAACCTTAG
AAAACCCCAAAATACCACCAAATAAAGAAAGAAATTAA
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protein sequence of NO04G05210.1

>NO04G05210.1-protein ID=NO04G05210.1-protein|Name=NO04G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MIPCVRRSVHQRLYSTPSHFKTANLRPYLATNTPCVCSYSSSTSPPTPPA
LLSSLFDRAPSPRPPLFPLPPSSISFLREPSEFYHTLFESISRCRDRLTL
SALYLGHGPMEQALVQHITAACAKYPSLQVHILLDHSRGTRGHSHHASSL
TTLAPLLSLPSFSSPNVRVSLFRMPQLSGPLARRFLPSPVNEAVAVSHVK
VMAFDDEEILITGANLSQDYFTTRQDRYVHIRGGGGGGGREGGRGGGPPE
SLACFYHELIETLGRYAVSPLVALSQEHRSVVDFQALKTELTDLFSSTSP
SLPPSFSDEHVCWAMPTVQCGPLGLRLDQTLLHALLSASPSPSSASQHMS
LATAYLNPPLSFLEDLQTWQQGGTEEGTEGGLQGEQQCNETGRKRGRERR
HLSILCPSAETHGFAGARGIKAFIPLAYALHEQRVRKHFRPSLPPSLPLS
LYRYTRPGWTFHGKGLWLLEGEEEGEGGREGEGVALTVAGSSNYGHRSFE
RDLESQVWLVSADGGLKERMREERASLLRECSSVGQGEGGREGGEEEEEA
LLRGHWKVWAPTLTTWTQGLL*
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mRNA from alignment at chr4:1462215..1464402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05210.1 ID=NO04G05210.1|Name=NO04G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp|location=Sequence derived from alignment at chr4:1462215..1464402+ (Nannochloropsis oceanica)
CTCCTACATGCGCTATCGCCCCGCCACGCCCCTAAACCCAACACGCAGCA
CATCCAATTACCACCGCACAACATCACACTGACACACATAGAGTAATAGC
TACGTTCTGCTGCCCTTGGTGCACCTATACGGGAGGACCGCTGCCTGTAC
TATTATTTTCGCCTCCATTTGCCTGCCGACTCCCTTGATTCAACTGATGA
TTCCCTGCGTCCGCCGCTCCGTACATCAGCGCCTCTACTCTACCCCCAGC
CACTTCAAGACAGCCAATCTCCGTCCCTACTTAGCTACCAACACCCCTTG
TGTTTGCTCCTACTCTTCGTCAACATCACCTCCCACTCCCCCAGCCCTCC
TGTCTTCCCTCTTCGACCGTGCCCCGTCCCCTCGTCCCCCTCTTTTCCCC
CTCCCCCCTTCTTCCATCTCCTTCCTCCGCGAGCCCTCCGAATTCTACCA
CACCCTCTTCGAGAGCATCAGTCGCTGTCGGGACCGCCTGACCCTCTCGG
CGCTCTACCTTGGACATGGCCCCATGGAACAAGCCCTCGTCCAGCACATC
ACCGCCGCTTGCGCCAAGTACCCCTCCCTGCAAGTCCACATCCTCCTCGA
TCATTCCCGCGGTACCCGCGGCCATAGTCATCACGCCTCCTCCCTTACGA
CCCTCGCCCCCCTCCTCTCCCTCCCCTCCTTTTCCTCCCCAAACGTCCGC
GTCTCCCTCTTCCGCATGCCCCAGCTTTCTGGCCCTCTTGCCCGACGCTT
CCTCCCAAGTCCTGTGAACGAAGCCGTGGCCGTCTCTCACGTCAAGGTCA
TGGCGTTTGACGACGAGGAGATCTTAATCACAGGAGCCAATTTATCGCAA
GATTATTTTACCACCAGGCAGGATCGCTACGTTCATATACGAGGGGGAGG
GGGAGGAGGAGGAAGAGAGGGAGGAAGGGGGGGAGGGCCGCCTGAGAGTC
TGGCTTGTTTCTACCACGAGTTAATTGAAACGCTAGGGCGTTATGCAGTC
TCCCCTCTCGTAGCTCTGAGTCAAGAACATCGGAGCGTCGTCGACTTCCA
AGCGCTCAAAACCGAACTAACGGACCTCTTTTCCTCCACTTCGCCCTCCC
TCCCTCCGTCTTTCTCGGACGAGCACGTCTGCTGGGCCATGCCCACCGTT
CAATGTGGCCCTCTGGGACTCCGACTTGACCAAACTCTCCTCCACGCCCT
CCTTTCCGCCTCCCCCTCCCCCTCCTCGGCCTCGCAGCACATGAGCCTTG
CCACGGCCTACCTCAACCCTCCCCTGTCCTTCCTCGAGGACCTACAGACG
TGGCAACAGGGAGGGACGGAGGAAGGGACAGAAGGAGGGCTCCAAGGAGA
GCAACAATGTAATGAAACGGGGAGGAAGAGAGGGAGGGAGAGAAGACATC
TGAGCATTCTATGTCCTTCGGCTGAGACGCACGGGTTCGCCGGTGCCCGA
GGCATCAAAGCCTTCATTCCCCTGGCATACGCCCTCCACGAACAGCGCGT
CCGCAAACACTTTCGCCCCTCCCTCCCTCCCTCCCTTCCTCTCTCCCTCT
ATCGATACACTCGCCCGGGCTGGACCTTCCATGGGAAGGGGCTGTGGCTG
CTTGAGGGGGAGGAAGAGGGGGAGGGAGGGAGGGAGGGAGAGGGGGTGGC
CTTGACGGTGGCGGGGAGTTCGAATTACGGGCATCGGTCGTTTGAGCGTG
ATTTGGAGTCGCAGGTGTGGCTGGTGAGCGCGGATGGAGGGCTGAAGGAG
AGGATGAGGGAGGAGAGGGCGTCCTTGCTTAGAGAGTGCTCTTCGGTAGG
GCAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGAAGAGGAGGAAGCGCTGT
TGAGGGGTCATTGGAAGGTATGGGCCCCCACGTTGACGACGTGGACGCAG
GGGCTACTGTGAGGGAGGGAGCGAGGGAGGGGCAGAGGGAGGGAGGGAAG
GTGGGAGGGGTGGGACTGACATGGTGGATGATTTAAGACACTGAGAGTGA
AAGAGACAATCGATTGGAAGGAGAGTAACAAGATAATGACAGTAAAGAGA
GAGAGAGTAAAGAGAGAGTGCGCAGAGAGAGTAGAGAGAGGGAGAGTAGA
GAAAGAGGACTACAGGTGCGAGGAACAAATGCATATGTCAACAACCTTAG
AAAACCCCAAAATACCACCAAATAAAGAAAGAAATTAA
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Coding sequence (CDS) from alignment at chr4:1462215..1464402+

>NO04G05210.1 ID=NO04G05210.1|Name=NO04G05210.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr4:1462215..1464402+ (Nannochloropsis oceanica)
ATGATTCCCTGCGTCCGCCGCTCCGTACATCAGCGCCTCTACTCTACCCC
CAGCCACTTCAAGACAGCCAATCTCCGTCCCTACTTAGCTACCAACACCC
CTTGTGTTTGCTCCTACTCTTCGTCAACATCACCTCCCACTCCCCCAGCC
CTCCTGTCTTCCCTCTTCGACCGTGCCCCGTCCCCTCGTCCCCCTCTTTT
CCCCCTCCCCCCTTCTTCCATCTCCTTCCTCCGCGAGCCCTCCGAATTCT
ACCACACCCTCTTCGAGAGCATCAGTCGCTGTCGGGACCGCCTGACCCTC
TCGGCGCTCTACCTTGGACATGGCCCCATGGAACAAGCCCTCGTCCAGCA
CATCACCGCCGCTTGCGCCAAGTACCCCTCCCTGCAAGTCCACATCCTCC
TCGATCATTCCCGCGGTACCCGCGGCCATAGTCATCACGCCTCCTCCCTT
ACGACCCTCGCCCCCCTCCTCTCCCTCCCCTCCTTTTCCTCCCCAAACGT
CCGCGTCTCCCTCTTCCGCATGCCCCAGCTTTCTGGCCCTCTTGCCCGAC
GCTTCCTCCCAAGTCCTGTGAACGAAGCCGTGGCCGTCTCTCACGTCAAG
GTCATGGCGTTTGACGACGAGGAGATCTTAATCACAGGAGCCAATTTATC
GCAAGATTATTTTACCACCAGGCAGGATCGCTACGTTCATATACGAGGGG
GAGGGGGAGGAGGAGGAAGAGAGGGAGGAAGGGGGGGAGGGCCGCCTGAG
AGTCTGGCTTGTTTCTACCACGAGTTAATTGAAACGCTAGGGCGTTATGC
AGTCTCCCCTCTCGTAGCTCTGAGTCAAGAACATCGGAGCGTCGTCGACT
TCCAAGCGCTCAAAACCGAACTAACGGACCTCTTTTCCTCCACTTCGCCC
TCCCTCCCTCCGTCTTTCTCGGACGAGCACGTCTGCTGGGCCATGCCCAC
CGTTCAATGTGGCCCTCTGGGACTCCGACTTGACCAAACTCTCCTCCACG
CCCTCCTTTCCGCCTCCCCCTCCCCCTCCTCGGCCTCGCAGCACATGAGC
CTTGCCACGGCCTACCTCAACCCTCCCCTGTCCTTCCTCGAGGACCTACA
GACGTGGCAACAGGGAGGGACGGAGGAAGGGACAGAAGGAGGGCTCCAAG
GAGAGCAACAATGTAATGAAACGGGGAGGAAGAGAGGGAGGGAGAGAAGA
CATCTGAGCATTCTATGTCCTTCGGCTGAGACGCACGGGTTCGCCGGTGC
CCGAGGCATCAAAGCCTTCATTCCCCTGGCATACGCCCTCCACGAACAGC
GCGTCCGCAAACACTTTCGCCCCTCCCTCCCTCCCTCCCTTCCTCTCTCC
CTCTATCGATACACTCGCCCGGGCTGGACCTTCCATGGGAAGGGGCTGTG
GCTGCTTGAGGGGGAGGAAGAGGGGGAGGGAGGGAGGGAGGGAGAGGGGG
TGGCCTTGACGGTGGCGGGGAGTTCGAATTACGGGCATCGGTCGTTTGAG
CGTGATTTGGAGTCGCAGGTGTGGCTGGTGAGCGCGGATGGAGGGCTGAA
GGAGAGGATGAGGGAGGAGAGGGCGTCCTTGCTTAGAGAGTGCTCTTCGG
TAGGGCAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGAAGAGGAGGAAGCG
CTGTTGAGGGGTCATTGGAAGGTATGGGCCCCCACGTTGACGACGTGGAC
GCAGGGGCTACTGTGA
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Synonyms
Publications