NO04G05140.1, NO04G05140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05140.1
Unique NameNO04G05140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1710
Alignment locationchr4:1433202..1435634 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1433202..1435634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05140NO04G05140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05140.1NO04G05140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05140.1.cds1NO04G05140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05140.1.cds2NO04G05140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05140.1.cds3NO04G05140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05140.1.cds4NO04G05140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05140.1.cds5NO04G05140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05140.1 ID=NO04G05140.1|Name=NO04G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp
AACAGGCGAGTAACTCACAACACACATTCACCTCACACTCCTGTCTACTT
TTGCCCGCTATCCGAGAGGTGCAGACGCTACAATCAGCAACCCATCATCA
AGATGCCCTCTCTGCCTCCCGCCTCGCCTCCAGACGTCCAACTCTCCCCA
GCTCGTGCGAAGGAGGGCCCGACCGAAGTCGAAGACATGCCAGTGGCGGC
CAAGTCGGACGAAAAAGTTGGAGTTTCGCCTTCCAGTTCGTCCGCTCCCC
TGAGCTACGACCACATGGATGAGACCGGGTTCAAGGACAGGCGAAGCAAC
GAGGAGGATGATGGGGAGGACGATGAGGAGGAGGAAGATGGGAAGAAAAG
CGCCCGTAGGGCGCGTCTCAAGGCGGAGGGTGGGGGGGGAGACGAGATCG
CGGAGGGGGAGGATGCCGCAATGGAGGAGGAGAAGGAAGGCGGGGAAGGA
CAGGAACGAGAGGAGCAGCAGCAGGGCAAGAAGGAGGTGAATGATTGGAC
TTACGTGCACATATCGAACCTTCGCTTAAAAACCACAGAGAGTGAGTTGG
AAGCACTCTTCTCCTCCGTCGGTCCCCTCCTCTTGTGCTACATTCGGCCT
AAGCGCAGCGACCGGAGTGAGAGTCTCACGGGACTAGTCAGGTTTGAGAA
GAAGGAGGATGCCGCGGCGGCCGTTACGAAGCTGTGCGGAGAACGTCTGC
ATGACCGTGTCCTCAAGCCCGAGCTTATCAACCGTCCGTTTCTTTTCTTG
GACGATAACGGCCGCCTGGTGGAGTCCAAGGGAAGGGACCGAGAGAAGGA
CAAGGAGCGGAAGGCAGCGCTTAAGGCGGCAGCGCGGCGGGAAGGAGGGA
GGGAGGGAGGGAGGGAAGCAGGGAGGGATCGACGGATGGGGACGGGGAAT
GGCGGAGGAGGTTGGCGGGGGAGGGAGGGAGGGAGGGAGAGGAGGGGGAG
GGGGTGGTCACCTCCGGGGAGGAGGACGGGACGATCCAGGTCACCTTTGC
GGCGAGGACGCTCTCGGTCTTTTGAACGGCAGGAAATCCGGCGGTTGGAG
GAGGAGCGTTACCGGCTGGAGGAGGAGAGGCGACGCTTGGAGGAGGAGCG
ACGACGATGGGCGTGGGAAAGGGAAGGAGGCGGGAAGGGGAGAGGGAGGG
AGGGAGGGAGGTGGATGGAGGGAGGGGATCGGTGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGGGATGGCGGGAGGGGGGAGAGAGGCTGCGTGG
GGCAGTGGCAGTGGTGGCGGCGAGGGCGGCAGGGAGGAGCCGAAGCAGGG
AGAGGGAGAGGGGATGGGAGAGGGAGCAGCAGCAGCACTATCATCATCAC
CATCAGGCCGCGTCTCATCATCTTCACCAGGGGAGGTGGTAGGGAGGGGA
GCGGAGGGAGGGCAGGACGGACGAAGGGCAGGGGAGAGGAGGAAGGGAGG
GAGGGAGGAAGGGAGGGAGGATTCGAAGAGGAGCAGGGGCCGGGCATTCC
GAGAAGAAATATAATTTATAAGAGGAGCAAGAGGAGGAAAAGGAAGGAAG
GATGGCAAGGAGAGGAGGAGAAGAAGAAAGAGAGGAAGGAAAACAGAAGA
AAAAAAGCATGATGGTGATAACGAAGAAAGAGAAGAAGGAAGAGAACAAA
AACACTGGAACAAGAGAAGAGGATGGTAAGGGGAACGAACGAAAGTAAGG
AACCGCGGAA
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protein sequence of NO04G05140.1

>NO04G05140.1-protein ID=NO04G05140.1-protein|Name=NO04G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPSLPPASPPDVQLSPARAKEGPTEVEDMPVAAKSDEKVGVSPSSSSAPL
SYDHMDETGFKDRRSNEEDDGEDDEEEEDGKKSARRARLKAEGGGGDEIA
EGEDAAMEEEKEGGEGQEREEQQQGKKEVNDWTYVHISNLRLKTTESELE
ALFSSVGPLLLCYIRPKRSDRSESLTGLVRFEKKEDAAAAVTKLCGERLH
DRVLKPELINRPFLFLDDNGRLVESKGRDREKDKERKAALKAAARREGGR
EGGREAGRDRRMGTGNGGGGWRGREGGRERRGRGWSPPGRRTGRSRSPLR
RGRSRSFERQEIRRLEEERYRLEEERRRLEEERRRWAWEREGGGKGRGRE
GGRWMEGGDRWEGGREGGREGGGWREGGERLRGAVAVVAARAAGRSRSRE
RERGWEREQQQHYHHHHQAASHHLHQGRW*
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mRNA from alignment at chr4:1433202..1435634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05140.1 ID=NO04G05140.1|Name=NO04G05140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr4:1433202..1435634- (Nannochloropsis oceanica)
AACAGGCGAGTAACTCACAACACACATTCACCTCACACTCCTGTCTACTT
TTGCCCGCTATCCGAGAGGTGCAGACGCTACAATCAGCAACCCATCATCA
AGATGCCCTCTCTGCCTCCCGCCTCGCCTCCAGACGTCCAACTCTCCCCA
GCTCGTGCGAAGGAGGGCCCGACCGAAGTCGAAGACATGCCAGTGGCGGC
CAAGTCGGACGAAAAAGGTGAGAGGTAGAGGAGCTGCTGCCGCTGCATGT
ATTGGAACCCGGTTCTCATTACTGACGCGTGCTCCTTCCGGTCTACCAAA
CAGTTGGAGTTTCGCCTTCCAGTTCGTCCGCTCCCCTGAGCTACGACCAC
ATGGATGAGACCGGGTTCAAGGACAGGCGAAGCAACGAGGAGGATGATGG
GGAGGACGATGAGGAGGAGGAAGATGGGAAGAAAAGCGCCCGTAGGGCGC
GTCTCAAGGCGGAGGGTGGGGGGGGAGACGAGATCGCGGAGGGGGAGGAT
GCCGCAATGGAGGAGGAGAAGGAAGGCGGGGAAGGACAGGAACGAGAGGA
GCAGCAGCAGGGCAAGAAGGAGGTGAATGATTGGACTTACGTGCACATAT
CGAACCTTCGCTTAAAAGTGAGTGACCCAAAGGAATGGAAGCCGGAAAAT
AGGAGGGAGGGAGGGAGGGAGGGCAGGAAAGGATGGACGACACAGATGCG
GTGTCGGAGGGCGATGCCACGTGAGTGATGGAACAAATTCTCAATTACGA
TGACGCAGACACAAATGTGTGACCATACATGCCCTTTTTCCTCACATCCC
TCTCTTCCTCCCTCCTTCTCTCCCTCCCCATTTCCTCGTGCCCCCAGACC
ACAGAGAGTGAGTTGGAAGCACTCTTCTCCTCCGTCGGTCCCCTCCTCTT
GTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACGGGAC
TAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAAGCTG
TGCGGGTGAGATGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGAAGGGAAG
GAGAAAGGGAAGGAGGAAGGGAGATTCTCCGCATGGCTGCTTGGTTGTTG
ATGTTTTTGACTGAATCTGCACACAAACTTTTCTTATTCCTCTCCCTCAG
AGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCAACCGTCCGT
TTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAGGGAAGGGAC
CGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGCAGCGCGGCG
GGAAGGAGGGAGGGAGGGAGGGAGGGAAGCAGGGAGGGATCGACGGATGG
GGACGGGGAATGGCGGAGGAGGTTGGCGGGGGAGGGAGGGAGGGAGGGAG
AGGAGGGGGAGGGGGTGGTCACCTCCGGGGAGGAGGACGGGACGATCCAG
GTCACCTTTGCGGCGAGGACGCTCTCGGTCTTTTGAACGGTACGTCCTTC
TCTCCCTTCTTCCCTCCCTTCCTCTTCTTTTCCCTGTTTCTTTCTTCGGG
CTGTTCAAAGGCACCAAGCAGTCACTCGCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTTGTCCTTCTTTTTCCCCAGCGGTGA
ATTCAAGCGCCAAAATACCGCACACCTGTCACTTATTCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCTTCGCGCCTTTTTCCCCCTATCTCTTTTCATGCA
GGCAGGAAATCCGGCGGTTGGAGGAGGAGCGTTACCGGCTGGAGGAGGAG
AGGCGACGCTTGGAGGAGGAGCGACGACGATGGGCGTGGGAAAGGGAAGG
AGGCGGGAAGGGGAGAGGGAGGGAGGGAGGGAGGTGGATGGAGGGAGGGG
ATCGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGATGGCGG
GAGGGGGGAGAGAGGCTGCGTGGGGCAGTGGCAGTGGTGGCGGCGAGGGC
GGCAGGGAGGAGCCGAAGCAGGGAGAGGGAGAGGGGATGGGAGAGGGAGC
AGCAGCAGCACTATCATCATCACCATCAGGCCGCGTCTCATCATCTTCAC
CAGGGGAGGTGGTAGGGAGGGGAGCGGAGGGAGGGCAGGACGGACGAAGG
GCAGGGGAGAGGAGGAAGGGAGGGAGGGAGGAAGGGAGGGAGGATTCGAA
GAGGAGCAGGGGCCGGGCATTCCGAGAAGAAATATAATTTATAAGAGGAG
CAAGAGGAGGAAAAGGAAGGAAGGATGGCAAGGAGAGGAGGAGAAGAAGA
AAGAGAGGAAGGAAAACAGAAGAAAAAAAGCATGATGGTGATAACGAAGA
AAGAGAAGAAGGAAGAGAACAAAAACACTGGAACAAGAGAAGAGGATGGT
AAGGGGAACGAACGAAAGTAAGGAACCGCGGAA
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Coding sequence (CDS) from alignment at chr4:1433202..1435634-

>NO04G05140.1 ID=NO04G05140.1|Name=NO04G05140.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr4:1433202..1435634- (Nannochloropsis oceanica)
ATGCCCTCTCTGCCTCCCGCCTCGCCTCCAGACGTCCAACTCTCCCCAGC
TCGTGCGAAGGAGGGCCCGACCGAAGTCGAAGACATGCCAGTGGCGGCCA
AGTCGGACGAAAAAGTTGGAGTTTCGCCTTCCAGTTCGTCCGCTCCCCTG
AGCTACGACCACATGGATGAGACCGGGTTCAAGGACAGGCGAAGCAACGA
GGAGGATGATGGGGAGGACGATGAGGAGGAGGAAGATGGGAAGAAAAGCG
CCCGTAGGGCGCGTCTCAAGGCGGAGGGTGGGGGGGGAGACGAGATCGCG
GAGGGGGAGGATGCCGCAATGGAGGAGGAGAAGGAAGGCGGGGAAGGACA
GGAACGAGAGGAGCAGCAGCAGGGCAAGAAGGAGGTGAATGATTGGACTT
ACGTGCACATATCGAACCTTCGCTTAAAAACCACAGAGAGTGAGTTGGAA
GCACTCTTCTCCTCCGTCGGTCCCCTCCTCTTGTGCTACATTCGGCCTAA
GCGCAGCGACCGGAGTGAGAGTCTCACGGGACTAGTCAGGTTTGAGAAGA
AGGAGGATGCCGCGGCGGCCGTTACGAAGCTGTGCGGAGAACGTCTGCAT
GACCGTGTCCTCAAGCCCGAGCTTATCAACCGTCCGTTTCTTTTCTTGGA
CGATAACGGCCGCCTGGTGGAGTCCAAGGGAAGGGACCGAGAGAAGGACA
AGGAGCGGAAGGCAGCGCTTAAGGCGGCAGCGCGGCGGGAAGGAGGGAGG
GAGGGAGGGAGGGAAGCAGGGAGGGATCGACGGATGGGGACGGGGAATGG
CGGAGGAGGTTGGCGGGGGAGGGAGGGAGGGAGGGAGAGGAGGGGGAGGG
GGTGGTCACCTCCGGGGAGGAGGACGGGACGATCCAGGTCACCTTTGCGG
CGAGGACGCTCTCGGTCTTTTGAACGGCAGGAAATCCGGCGGTTGGAGGA
GGAGCGTTACCGGCTGGAGGAGGAGAGGCGACGCTTGGAGGAGGAGCGAC
GACGATGGGCGTGGGAAAGGGAAGGAGGCGGGAAGGGGAGAGGGAGGGAG
GGAGGGAGGTGGATGGAGGGAGGGGATCGGTGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGGGATGGCGGGAGGGGGGAGAGAGGCTGCGTGGGG
CAGTGGCAGTGGTGGCGGCGAGGGCGGCAGGGAGGAGCCGAAGCAGGGAG
AGGGAGAGGGGATGGGAGAGGGAGCAGCAGCAGCACTATCATCATCACCA
TCAGGCCGCGTCTCATCATCTTCACCAGGGGAGGTGGTAG
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Synonyms
Publications