NO04G05120.1, NO04G05120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05120.1
Unique NameNO04G05120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1450
Alignment locationchr4:1428178..1430336 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1428178..1430336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G05120.1 vs.
Match: EWM28924.1 (hypothetical protein Naga_100142g2 [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 2.600e-62
Identity = 145/259 (55.98%), Postives = 185/259 (71.43%), Query Frame = 0
Query:  113 QPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAA-----VGKGERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSPTATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLLLEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTARTYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEAGVQKEAEEQAQGEDGKEGEGE 367
            +PQQ Y       +  R FSS+P   A   + K        G+ +RTLLT L++ GA    L++AL EKCKG KLPR QDLHAL LS S  S    KE++K L+L+AV LFL+KNVEF E SA+LFLR+MLR+DGL +AVD LL + KR+G+WAQRK LH+ALH+LG AKDTERLL LF+AM P M +  +ARTYHLVIRGL+NAG+ KKA E+AG+A++ LADSTQE+LK A+ AEA  QK+  E  +G+D  + EG+
Sbjct:   75 KPQQTYLH-----IPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEAAEQKKGVEMEEGKDTDKEEGQ 328          
The following BLAST results are available for this feature:
BLAST of NO04G05120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28924.12.600e-6255.98hypothetical protein Naga_100142g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05120NO04G05120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05120.1NO04G05120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05120.1.cds1NO04G05120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05120.1.cds2NO04G05120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05120.1.cds3NO04G05120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05120.1.cds4NO04G05120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05120.1.cds5NO04G05120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp
CAGACACTTTTCTTTCCGCTTCTTCCATACGGCGCAATGCTATCTGACCA
GCTACAGGTACTCACATTTGATTCTGCGAAAAATTGGGGCGTTTGAACAA
AACTGCAGCTTGTAAACGCATACCCGGAGCCCCCTGTCGCCCCATTATCA
TCCATCTTACAAGCGCTGTGCGTGCAGGGAGATGCTAGTACAGACACCAA
GGCACTCACGATTATCTGCACCTGACACGTTAAGACACAGGCAAAGCACA
TCCCGGCCCGACGCTAGCGTACAAAGCTCTCCAAAAGTAGCCCCCCCACC
ATCATCCATCATCATCATGCTGCCCTCCTCCTCTACCCTTCGCACGCTCC
TGGGCCGCAGCAGCGTTGCCGCCACCAAAAAGACAGCTCTCTCCCTCCTC
TCCATGGCAAGAAGATGGGCTTGCTGTAGCGGTACTAGCAGCAGCTGTAG
CAGCATAAATGGCATCAGCAGCTTTGCTGCACGGGGTCCGACTTGCCCTA
TCCTCCTCTCGTTGCCACAGCCGCAGCAGCGTTACCGGCAATCAGCACCG
CAGCAAGTGCACTCACGCGCATTCTCATCTTCTCCTACCGAGGCAGCGCC
TGCCAAGACAAAGAAAGCAGCTGTTGGCAAAGGCGAACGAACCCTTCTCA
CTCATCTCAGGAAAAGCGGAGCCCCCACGAGCGCCCTCTTCGAAGCCCTC
GGGGAGAAGTGCAAGGGGAGTAAGCTTCCTCGCCTGCAAGACCTGCACGC
TCTCCTCCTTTCCACCTCGACATTAAGCCCGACTGCCACCAAGGAAGAAA
ACAAACGCCTGATTCTCGCGGCGGTGCACCTCTTCCTTCACAAGAACGTG
GAGTTCAGTGAGCAGTCTGCGGCGCTCTTCCTCCGGTCTATGCTGAGGGT
GGACGGGCTGGCCGACGCGGTGGATTTGCTGCTGGAGAAAAGGAAGAGGA
TGGGGATGTGGGCACAGCGGAAGACATTGCACATAGCCTTACACAAGTTG
GGCGGGGCAAAGGATACCGAGCGGCTTTTGGCGTTGTTCGAGGCTATGGT
GCCTGTGATGGGCATCGAGCACACAGCAAGGACATACCACCTGGTCATCC
GTGGGCTTCTCAACGCTGGAGAAGAGAAAAAGGCGTTAGAAGTGGCAGGC
AAGGCTTCATTGGCCTTGGCAGACAGCACACAGGAGATGCTCAAGAAGGC
GGTGGAGGCTGAGGCGGGCGTCCAGAAGGAGGCGGAGGAGCAAGCGCAGG
GGGAGGATGGGAAGGAGGGAGAAGGGGAAAATAAGGAGAATAAGTGAGAG
AGAAGGGGACGTCGAGCGCATGGAGTGTCGGTTGGAGGAGAAAGTGGGGC
TTGCTTCTGTCGCTGCTTGGGAAAAGGAGTACAAACAATGAAGAAAGTGC
AGTAGATGCAACGTTTTAAAATCACTCTTGGAAAGGCAGTCGAAAAACGC
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protein sequence of NO04G05120.1

>NO04G05120.1-protein ID=NO04G05120.1-protein|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLVQTPRHSRLSAPDTLRHRQSTSRPDASVQSSPKVAPPPSSIIIMLPSS
STLRTLLGRSSVAATKKTALSLLSMARRWACCSGTSSSCSSINGISSFAA
RGPTCPILLSLPQPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAAVGK
GERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSP
TATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLL
LEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTAR
TYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEAGVQKE
AEEQAQGEDGKEGEGENKENK*
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mRNA from alignment at chr4:1428178..1430336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2159bp|location=Sequence derived from alignment at chr4:1428178..1430336+ (Nannochloropsis oceanica)
CAGACACTTTTCTTTCCGCTTCTTCCATACGGCGCAATGCTATCTGACCA GCTACAGGTACTCACATTTGATTCTGCGAAAAATTGGGGCGTTTGAACAA AACTGCAGCTTGTAAACGCATACCCGGAGCCCCCTGTCGCCCCATTATCA TCCATCTTACAAGCGCTGTGCGTGCAGGGAGATGCTAGTACAGACACCAA GGCACTCACGATTATCTGCACCTGACACGTTAAGACACAGGCAAAGCACA TCCCGGCCCGACGCTAGCGTACAAAGCTCTCCAAAAGTAGCCCCCCCACC ATCATCCATCATCATCATGCTGCCCTCCTCCTCTACCCTTCGCACGCTCC TGGGCCGCAGCAGCGTTGCCGCCACCAAAAAGACAGCTCTCTCCCTCCTC TCCATGGCAAGAAGATGGGCTTGCTGTAGCGGTACTAGCAGCAGCTGTAG CAGCATAAATGGCATCAGCAGCTTTGCTGCACGGGGTCCGACTTGCCCTA TCCTCCTCTCGTTGCCACAGCCGCAGCAGCGTTACCGGCAATCAGCACCG CAGCAAGTGCACTCACGCGCATTCTCATCTTCTCCTACCGAGGCAGCGCC TGCCAAGACAAAGAAAGGTACTTCGCTGGTGGAGGACTGAAATGCGCGTG CGGGATATGTGAAACCTCACCCTCCTTCCCCCCCCCCCATCCCTCCCTCC CTCTCTCGTTCTTCGTGTCCCTTTGTCACCAGCAGCTGTTGGCAAAGGCG AACGAACCCTTCTCACTCATCTCAGGAAAAGCGGAGCCCCCACGAGCGCC CTCTTCGAAGCCCTCGGGGAGAAGTGCAAGGTAAGAGAGGGAGGGGAAGG AGTGAGAGGTGGAAGGGTAGGAGGCCGGAATCGGATTTTGGATTGTCGCG AGCCATTAAGCGACATACAAGGCCCAATAAAGGGAAACACGTGATGAACA CAAATTCCTTGTTACAATGATCGGATCTATTCGCTCAATTTACTGTCTCC GTCCGTCCCTCCCTCCGTACCTCTCTCATCACAGGGGAGTAAGCTTCCTC GCCTGCAAGACCTGCACGCTCTCCTCCTTTCCACCTCGACATTAAGCCCG ACTGCCACCAAGGAAGAAAACAAACGCCTGATTCTCGCGGCGGTGCACCT CTTCCTTCACAAGAACGTGGAGTTCAGTGAGCAGTCTGCGGCGCTCTTCC TCCGGTCTATGCTGAGGGTGGACGGGCTGGCCGACGCGGTGGATTTGCTG CTGGAGAAAAGGAAGAGGATGGGGATGTGGGCACAGCGGAAGACATTGCA CATAGCCTTACACAAGTGCGTTTGCGAGAGAGGGAGGGTGGGGAGAGGAT GGAAGGGTGTGGAGGGGGAGAGGTAGTGAAGAGTCTCGATGATGAAATGC ATGTTAAGACTCACCAGCTTTTTCATTTCTCCTCGTGCCTTCCTTCTATT CCTTTGTTCGAAATTTACCCAGGTTGGGCGGGGCAAAGGATACCGAGCGG CTTTTGGCGTTGTTCGAGGCTATGGTGCCTGTGATGGGCATCGAGCACAC AGCAAGGTAGATAGGGAGGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGAA AGGAAAGGAGGGAGAGGAAAGAAGGGGGTAGGAGAAGGGCGTGGTGTGAG GGCAAGGGTAAGATGAGTTTGCCTGTTTGCATCCCAGGAGGTAGGTGTGT GTTTTTTACACACGACCTCACCCATCACTCACTCCATGCTTCTTTCTCTT CCCTCCCCCTCCCCTCGTCCCTCCCCCTCCCTCCTCCAGGACATACCACC TGGTCATCCGTGGGCTTCTCAACGCTGGAGAAGAGAAAAAGGCGTTAGAA GTGGCAGGCAAGGCTTCATTGGCCTTGGCAGACAGCACACAGGAGATGCT CAAGAAGGCGGTGGAGGCTGAGGCGGGCGTCCAGAAGGAGGCGGAGGAGC AAGCGCAGGGGGAGGATGGGAAGGAGGGAGAAGGGGAAAATAAGGAGAAT AAGTGAGAGAGAAGGGGACGTCGAGCGCATGGAGTGTCGGTTGGAGGAGA AAGTGGGGCTTGCTTCTGTCGCTGCTTGGGAAAAGGAGTACAAACAATGA AGAAAGTGCAGTAGATGCAACGTTTTAAAATCACTCTTGGAAAGGCAGTC GAAAAACGC
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Coding sequence (CDS) from alignment at chr4:1428178..1430336+

>NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr4:1428178..1430336+ (Nannochloropsis oceanica)
ATGCTAGTACAGACACCAAGGCACTCACGATTATCTGCACCTGACACGTT
AAGACACAGGCAAAGCACATCCCGGCCCGACGCTAGCGTACAAAGCTCTC
CAAAAGTAGCCCCCCCACCATCATCCATCATCATCATGCTGCCCTCCTCC
TCTACCCTTCGCACGCTCCTGGGCCGCAGCAGCGTTGCCGCCACCAAAAA
GACAGCTCTCTCCCTCCTCTCCATGGCAAGAAGATGGGCTTGCTGTAGCG
GTACTAGCAGCAGCTGTAGCAGCATAAATGGCATCAGCAGCTTTGCTGCA
CGGGGTCCGACTTGCCCTATCCTCCTCTCGTTGCCACAGCCGCAGCAGCG
TTACCGGCAATCAGCACCGCAGCAAGTGCACTCACGCGCATTCTCATCTT
CTCCTACCGAGGCAGCGCCTGCCAAGACAAAGAAAGCAGCTGTTGGCAAA
GGCGAACGAACCCTTCTCACTCATCTCAGGAAAAGCGGAGCCCCCACGAG
CGCCCTCTTCGAAGCCCTCGGGGAGAAGTGCAAGGGGAGTAAGCTTCCTC
GCCTGCAAGACCTGCACGCTCTCCTCCTTTCCACCTCGACATTAAGCCCG
ACTGCCACCAAGGAAGAAAACAAACGCCTGATTCTCGCGGCGGTGCACCT
CTTCCTTCACAAGAACGTGGAGTTCAGTGAGCAGTCTGCGGCGCTCTTCC
TCCGGTCTATGCTGAGGGTGGACGGGCTGGCCGACGCGGTGGATTTGCTG
CTGGAGAAAAGGAAGAGGATGGGGATGTGGGCACAGCGGAAGACATTGCA
CATAGCCTTACACAAGTTGGGCGGGGCAAAGGATACCGAGCGGCTTTTGG
CGTTGTTCGAGGCTATGGTGCCTGTGATGGGCATCGAGCACACAGCAAGG
ACATACCACCTGGTCATCCGTGGGCTTCTCAACGCTGGAGAAGAGAAAAA
GGCGTTAGAAGTGGCAGGCAAGGCTTCATTGGCCTTGGCAGACAGCACAC
AGGAGATGCTCAAGAAGGCGGTGGAGGCTGAGGCGGGCGTCCAGAAGGAG
GCGGAGGAGCAAGCGCAGGGGGAGGATGGGAAGGAGGGAGAAGGGGAAAA
TAAGGAGAATAAGTGA
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Synonyms
Publications