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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1428178..1430336 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05120.1 vs.
Match: EWM28924.1 (hypothetical protein Naga_100142g2 [Nannochloropsis gaditana]) HSP 1 Score: 248.8 bits (634), Expect = 2.600e-62 Identity = 145/259 (55.98%), Postives = 185/259 (71.43%), Query Frame = 0
Query: 113 QPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAA-----VGKGERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSPTATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLLLEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTARTYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEAGVQKEAEEQAQGEDGKEGEGE 367
+PQQ Y + R FSS+P A + K G+ +RTLLT L++ GA L++AL EKCKG KLPR QDLHAL LS S S KE++K L+L+AV LFL+KNVEF E SA+LFLR+MLR+DGL +AVD LL + KR+G+WAQRK LH+ALH+LG AKDTERLL LF+AM P M + +ARTYHLVIRGL+NAG+ KKA E+AG+A++ LADSTQE+LK A+ AEA QK+ E +G+D + EG+
Sbjct: 75 KPQQTYLH-----IPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEAAEQKKGVEMEEGKDTDKEEGQ 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp CAGACACTTTTCTTTCCGCTTCTTCCATACGGCGCAATGCTATCTGACCA GCTACAGGTACTCACATTTGATTCTGCGAAAAATTGGGGCGTTTGAACAA AACTGCAGCTTGTAAACGCATACCCGGAGCCCCCTGTCGCCCCATTATCA TCCATCTTACAAGCGCTGTGCGTGCAGGGAGATGCTAGTACAGACACCAA GGCACTCACGATTATCTGCACCTGACACGTTAAGACACAGGCAAAGCACA TCCCGGCCCGACGCTAGCGTACAAAGCTCTCCAAAAGTAGCCCCCCCACC ATCATCCATCATCATCATGCTGCCCTCCTCCTCTACCCTTCGCACGCTCC TGGGCCGCAGCAGCGTTGCCGCCACCAAAAAGACAGCTCTCTCCCTCCTC TCCATGGCAAGAAGATGGGCTTGCTGTAGCGGTACTAGCAGCAGCTGTAG CAGCATAAATGGCATCAGCAGCTTTGCTGCACGGGGTCCGACTTGCCCTA TCCTCCTCTCGTTGCCACAGCCGCAGCAGCGTTACCGGCAATCAGCACCG CAGCAAGTGCACTCACGCGCATTCTCATCTTCTCCTACCGAGGCAGCGCC TGCCAAGACAAAGAAAGCAGCTGTTGGCAAAGGCGAACGAACCCTTCTCA CTCATCTCAGGAAAAGCGGAGCCCCCACGAGCGCCCTCTTCGAAGCCCTC GGGGAGAAGTGCAAGGGGAGTAAGCTTCCTCGCCTGCAAGACCTGCACGC TCTCCTCCTTTCCACCTCGACATTAAGCCCGACTGCCACCAAGGAAGAAA ACAAACGCCTGATTCTCGCGGCGGTGCACCTCTTCCTTCACAAGAACGTG GAGTTCAGTGAGCAGTCTGCGGCGCTCTTCCTCCGGTCTATGCTGAGGGT GGACGGGCTGGCCGACGCGGTGGATTTGCTGCTGGAGAAAAGGAAGAGGA TGGGGATGTGGGCACAGCGGAAGACATTGCACATAGCCTTACACAAGTTG GGCGGGGCAAAGGATACCGAGCGGCTTTTGGCGTTGTTCGAGGCTATGGT GCCTGTGATGGGCATCGAGCACACAGCAAGGACATACCACCTGGTCATCC GTGGGCTTCTCAACGCTGGAGAAGAGAAAAAGGCGTTAGAAGTGGCAGGC AAGGCTTCATTGGCCTTGGCAGACAGCACACAGGAGATGCTCAAGAAGGC GGTGGAGGCTGAGGCGGGCGTCCAGAAGGAGGCGGAGGAGCAAGCGCAGG GGGAGGATGGGAAGGAGGGAGAAGGGGAAAATAAGGAGAATAAGTGAGAG AGAAGGGGACGTCGAGCGCATGGAGTGTCGGTTGGAGGAGAAAGTGGGGC TTGCTTCTGTCGCTGCTTGGGAAAAGGAGTACAAACAATGAAGAAAGTGC AGTAGATGCAACGTTTTAAAATCACTCTTGGAAAGGCAGTCGAAAAACGC back to topprotein sequence of NO04G05120.1 >NO04G05120.1-protein ID=NO04G05120.1-protein|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp MLVQTPRHSRLSAPDTLRHRQSTSRPDASVQSSPKVAPPPSSIIIMLPSS STLRTLLGRSSVAATKKTALSLLSMARRWACCSGTSSSCSSINGISSFAA RGPTCPILLSLPQPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAAVGK GERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSP TATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLL LEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTAR TYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEAGVQKE AEEQAQGEDGKEGEGENKENK* back to topmRNA from alignment at chr4:1428178..1430336+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2159bp|location=Sequence derived from alignment at chr4:1428178..1430336+ (Nannochloropsis oceanica) CAGACACTTTTCTTTCCGCTTCTTCCATACGGCGCAATGCTATCTGACCA
GCTACAGGTACTCACATTTGATTCTGCGAAAAATTGGGGCGTTTGAACAA
AACTGCAGCTTGTAAACGCATACCCGGAGCCCCCTGTCGCCCCATTATCA
TCCATCTTACAAGCGCTGTGCGTGCAGGGAGATGCTAGTACAGACACCAA
GGCACTCACGATTATCTGCACCTGACACGTTAAGACACAGGCAAAGCACA
TCCCGGCCCGACGCTAGCGTACAAAGCTCTCCAAAAGTAGCCCCCCCACC
ATCATCCATCATCATCATGCTGCCCTCCTCCTCTACCCTTCGCACGCTCC
TGGGCCGCAGCAGCGTTGCCGCCACCAAAAAGACAGCTCTCTCCCTCCTC
TCCATGGCAAGAAGATGGGCTTGCTGTAGCGGTACTAGCAGCAGCTGTAG
CAGCATAAATGGCATCAGCAGCTTTGCTGCACGGGGTCCGACTTGCCCTA
TCCTCCTCTCGTTGCCACAGCCGCAGCAGCGTTACCGGCAATCAGCACCG
CAGCAAGTGCACTCACGCGCATTCTCATCTTCTCCTACCGAGGCAGCGCC
TGCCAAGACAAAGAAAGGTACTTCGCTGGTGGAGGACTGAAATGCGCGTG
CGGGATATGTGAAACCTCACCCTCCTTCCCCCCCCCCCATCCCTCCCTCC
CTCTCTCGTTCTTCGTGTCCCTTTGTCACCAGCAGCTGTTGGCAAAGGCG
AACGAACCCTTCTCACTCATCTCAGGAAAAGCGGAGCCCCCACGAGCGCC
CTCTTCGAAGCCCTCGGGGAGAAGTGCAAGGTAAGAGAGGGAGGGGAAGG
AGTGAGAGGTGGAAGGGTAGGAGGCCGGAATCGGATTTTGGATTGTCGCG
AGCCATTAAGCGACATACAAGGCCCAATAAAGGGAAACACGTGATGAACA
CAAATTCCTTGTTACAATGATCGGATCTATTCGCTCAATTTACTGTCTCC
GTCCGTCCCTCCCTCCGTACCTCTCTCATCACAGGGGAGTAAGCTTCCTC
GCCTGCAAGACCTGCACGCTCTCCTCCTTTCCACCTCGACATTAAGCCCG
ACTGCCACCAAGGAAGAAAACAAACGCCTGATTCTCGCGGCGGTGCACCT
CTTCCTTCACAAGAACGTGGAGTTCAGTGAGCAGTCTGCGGCGCTCTTCC
TCCGGTCTATGCTGAGGGTGGACGGGCTGGCCGACGCGGTGGATTTGCTG
CTGGAGAAAAGGAAGAGGATGGGGATGTGGGCACAGCGGAAGACATTGCA
CATAGCCTTACACAAGTGCGTTTGCGAGAGAGGGAGGGTGGGGAGAGGAT
GGAAGGGTGTGGAGGGGGAGAGGTAGTGAAGAGTCTCGATGATGAAATGC
ATGTTAAGACTCACCAGCTTTTTCATTTCTCCTCGTGCCTTCCTTCTATT
CCTTTGTTCGAAATTTACCCAGGTTGGGCGGGGCAAAGGATACCGAGCGG
CTTTTGGCGTTGTTCGAGGCTATGGTGCCTGTGATGGGCATCGAGCACAC
AGCAAGGTAGATAGGGAGGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGAA
AGGAAAGGAGGGAGAGGAAAGAAGGGGGTAGGAGAAGGGCGTGGTGTGAG
GGCAAGGGTAAGATGAGTTTGCCTGTTTGCATCCCAGGAGGTAGGTGTGT
GTTTTTTACACACGACCTCACCCATCACTCACTCCATGCTTCTTTCTCTT
CCCTCCCCCTCCCCTCGTCCCTCCCCCTCCCTCCTCCAGGACATACCACC
TGGTCATCCGTGGGCTTCTCAACGCTGGAGAAGAGAAAAAGGCGTTAGAA
GTGGCAGGCAAGGCTTCATTGGCCTTGGCAGACAGCACACAGGAGATGCT
CAAGAAGGCGGTGGAGGCTGAGGCGGGCGTCCAGAAGGAGGCGGAGGAGC
AAGCGCAGGGGGAGGATGGGAAGGAGGGAGAAGGGGAAAATAAGGAGAAT
AAGTGAGAGAGAAGGGGACGTCGAGCGCATGGAGTGTCGGTTGGAGGAGA
AAGTGGGGCTTGCTTCTGTCGCTGCTTGGGAAAAGGAGTACAAACAATGA
AGAAAGTGCAGTAGATGCAACGTTTTAAAATCACTCTTGGAAAGGCAGTC
GAAAAACGC back to topCoding sequence (CDS) from alignment at chr4:1428178..1430336+ >NO04G05120.1 ID=NO04G05120.1|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr4:1428178..1430336+ (Nannochloropsis oceanica) ATGCTAGTACAGACACCAAGGCACTCACGATTATCTGCACCTGACACGTT AAGACACAGGCAAAGCACATCCCGGCCCGACGCTAGCGTACAAAGCTCTC CAAAAGTAGCCCCCCCACCATCATCCATCATCATCATGCTGCCCTCCTCC TCTACCCTTCGCACGCTCCTGGGCCGCAGCAGCGTTGCCGCCACCAAAAA GACAGCTCTCTCCCTCCTCTCCATGGCAAGAAGATGGGCTTGCTGTAGCG GTACTAGCAGCAGCTGTAGCAGCATAAATGGCATCAGCAGCTTTGCTGCA CGGGGTCCGACTTGCCCTATCCTCCTCTCGTTGCCACAGCCGCAGCAGCG TTACCGGCAATCAGCACCGCAGCAAGTGCACTCACGCGCATTCTCATCTT CTCCTACCGAGGCAGCGCCTGCCAAGACAAAGAAAGCAGCTGTTGGCAAA GGCGAACGAACCCTTCTCACTCATCTCAGGAAAAGCGGAGCCCCCACGAG CGCCCTCTTCGAAGCCCTCGGGGAGAAGTGCAAGGGGAGTAAGCTTCCTC GCCTGCAAGACCTGCACGCTCTCCTCCTTTCCACCTCGACATTAAGCCCG ACTGCCACCAAGGAAGAAAACAAACGCCTGATTCTCGCGGCGGTGCACCT CTTCCTTCACAAGAACGTGGAGTTCAGTGAGCAGTCTGCGGCGCTCTTCC TCCGGTCTATGCTGAGGGTGGACGGGCTGGCCGACGCGGTGGATTTGCTG CTGGAGAAAAGGAAGAGGATGGGGATGTGGGCACAGCGGAAGACATTGCA CATAGCCTTACACAAGTTGGGCGGGGCAAAGGATACCGAGCGGCTTTTGG CGTTGTTCGAGGCTATGGTGCCTGTGATGGGCATCGAGCACACAGCAAGG ACATACCACCTGGTCATCCGTGGGCTTCTCAACGCTGGAGAAGAGAAAAA GGCGTTAGAAGTGGCAGGCAAGGCTTCATTGGCCTTGGCAGACAGCACAC AGGAGATGCTCAAGAAGGCGGTGGAGGCTGAGGCGGGCGTCCAGAAGGAG GCGGAGGAGCAAGCGCAGGGGGAGGATGGGAAGGAGGGAGAAGGGGAAAA TAAGGAGAATAAGTGA back to top
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