NO04G05060.1, NO04G05060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05060.1
Unique NameNO04G05060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1979
Alignment locationchr4:1408388..1410366 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1408388..1410366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05060.1 vs.
Match: XP_005853998.1 (hypothetical protein NGA_0480100 [Nannochloropsis gaditana CCMP526]; EKU22367.1 hypothetical protein NGA_0480100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.6 bits (732), Expect = 9.100e-74
Identity = 156/280 (55.71%), Postives = 209/280 (74.64%), Query Frame = 0 
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFT--LTSNTPDLSVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQLKL 279
            ML  VA+++G+NFGA+KYLD   VDVS++T++RF LAS+AL PFL+    PV+  G+EVG+WV++GYI QAIGL+TT+ASKSAFICSL VVVVP++  ++ KK A PTTW A  LAV GVGLLTL+G    P IGDLWSLGQP+GFGIAF+R E  M+   G+A+ + A+QM +V   S +W + T  +  NT DLS+L++  +  +L YTG+I+S +AVV ES AL ++S+EET++I STEPL+AA   +V+LGE +   G LGG VIL  CL+TQ+ L
Sbjct:   69 MLVVVALLWGSNFGALKYLDTCGVDVSLLTSMRFLLASVALLPFLWGKGMPVLKAGLEVGLWVTLGYITQAIGLETTEASKSAFICSLTVVVVPLIQGLLGKKIA-PTTWTACGLAVLGVGLLTLQG-ATGPVIGDLWSLGQPLGFGIAFMRIEHYMKQLPGKAIPLAAAQMISVFGVSAVWAAVTTGMFQNTGDLSILFDTPHFLSLLYTGLISSALAVVIESAALEYVSSEETSIIFSTEPLFAAATSAVVLGERLKPSGILGGFVILSACLLTQVDL 346
The following BLAST results are available for this feature:
BLAST of NO04G05060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853998.19.100e-7455.71hypothetical protein NGA_0480100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05060NO04G05060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05060.1NO04G05060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05060.1.cds1NO04G05060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05060.1 ID=NO04G05060.1|Name=NO04G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp
CAGGTGGCCTACAAATGCCCTGCATTTCCATTTAGGCACTTAGGTCACAG
GCACCTACTTCCCTGCCCGCCACCGCTGTTCATTTTCGCACTTCTGAGCA
AGGTCAACTTCACTTCCACAAGATGCAAACGGAGCAAGCAGCAATACCCC
CGGCGCAGCAATCAAGATGGCGGGCTACCGGCGCGGTGCCCCTATCGATA
ATCCTTATCCTTCTTTCCATCATTTTAATGACGGAACCCACGGCCAGCTC
GACAGGCAGTGTTGGGGCCGGCAACAGCAGATGGATAGCAACGACGTCTG
GGCACCCAATAAGAAGAAGACATCTAGGGCTAGAGACAGTCATCAGCAGC
GGCCTGTGTTCCTCATTTGTCCCACCTCCGCCTCCCCCACCATCATCGTC
ATCATCATTCCCCTCCTCTGGCAACGGTGTTTCAAATACAAGGAAAAGAA
GAAGAAAAAGTGGTGATGACAGGAACACACCCCTCAGCCGGACAGGCAGC
ACGCGGCGGAGCAGCAAGCAAATGCGCTTTTCGCCTTTCGAGGCCACGCC
TTCCTCCTCTTTCTCCTCATCCTCCTCCTCCTCCTTTTCTTCCATCCCAA
ACTCCAAGAGCCGCAAGGTCCTCTTCTCTGCCTTGCAAGCCCAATCTTCA
ACACTACCACGTGAGGCCCCCGCCCTTCCTCCCCCTCTCCCTCCCTCCTT
CCTCTCCACCGCCCCCTCCACCCGCGGCAAAACCATTTTCAGTGGCCTCC
AACAAATCTGGACGAGTCTTAAAGGCGGCAGGGGGAAGGCGGACCCTGAT
GGGGGGGGGAAGGCGGGGGAGGGGATAATACGGCCTTCAAAGCCATGCTC
GCCTCGGTTGCCGTTATATACGGTACCAATTTTGGAGCCATCAAATACCT
GGATGAAGCCAACGTGGACGTCTCCATTGTCACGGCAATCCGTTTTGCCC
TGGCCTCGCTGGCCCTGTGCCCTTTCCTCTACAAAGCTCCTTGGCCAGTG
GTGTTGCGTGGGATTGAGGTAGGGGTGTGGGTCTCCGTAGGCTACATTGC
CCAGGCCATTGGTCTTCAAACCACGCAAGCCTCCAAGTCGGCCTTCATCT
GCTCCCTCGCCGTCGTAGTCGTCCCCATTGTCAATGCCATTATTTACAAG
AAGAAAGCCCCTCCCACCACCTGGCTGGCCTCCCTCCTCGCCGTGGCTGG
CGTCGGCCTCCTCACCCTCGAAGGGAAGGGCAACCCCCCCTGCATTGGCG
ACCTATGGTCCCTAGGACAGCCTATAGGCTTCGGAATCGCCTTTGTTCGC
ACAGAACAATGCATGCAAGCCAATAAGGGCGAGGCCCTGGCCATGACAGC
TTCGCAGATGGCGGCAGTCTTGGCATGCTCCATCCTCTGGGTCTCCTTCA
CCCTCACGTCCAACACACCCGACCTAAGCGTCCTGTACGAGCCAGTAAAT
CTCGCGGCCTTGTTCTACACGGGTGTCATCACCAGTGGCATCGCCGTCGT
GGCGGAGAGCGTCGCCCTGGCCCATATCTCCGCCGAGGAGACTACCGTGA
TCCTGTCGACGGAGCCGCTGTGGGCTGCCCTGTTCGGGTCAGTGATATTG
GGGGAGACAATGAGTGGATTTGGCTATTTGGGAGGGGCTGTGATATTGCT
CGGGTGCTTGGTGACTCAGTTGAAGCTGCCGAAGACTTTAGAGAAGCTGC
TAAAGCCGTGGGGGGAAGGAGTGGAGGAGGCAGGGGAGGATTGAGGTATG
TAATGCAGAACGAGGAGGAGGAGTGGTGGTGGTAGTAGTAGCAGCAGTCA
CAACGGCAGCGGCTGGAGCGGCAGATGGATGGAAATAAATGTCAGTGTTC
ACAAAAAGGAAAGGGAATATAAGACAAAGGGAAAAGTAAGAGAGGTACAG
AGATACTATAAGTCAAAGATAAATACGCAGAGATTAACCGACTGAAGATT
AGAGCGGGAAAAGAGCGAGGCATTACGAG
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protein sequence of NO04G05060.1

>NO04G05060.1-protein ID=NO04G05060.1-protein|Name=NO04G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPW
PVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAII
YKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAF
VRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTSNTPDLSVLYEP
VNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSV
ILGETMSGFGYLGGAVILLGCLVTQLKLPKTLEKLLKPWGEGVEEAGED*
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mRNA from alignment at chr4:1408388..1410366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05060.1 ID=NO04G05060.1|Name=NO04G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at chr4:1408388..1410366- (Nannochloropsis oceanica)
CAGGTGGCCTACAAATGCCCTGCATTTCCATTTAGGCACTTAGGTCACAG
GCACCTACTTCCCTGCCCGCCACCGCTGTTCATTTTCGCACTTCTGAGCA
AGGTCAACTTCACTTCCACAAGATGCAAACGGAGCAAGCAGCAATACCCC
CGGCGCAGCAATCAAGATGGCGGGCTACCGGCGCGGTGCCCCTATCGATA
ATCCTTATCCTTCTTTCCATCATTTTAATGACGGAACCCACGGCCAGCTC
GACAGGCAGTGTTGGGGCCGGCAACAGCAGATGGATAGCAACGACGTCTG
GGCACCCAATAAGAAGAAGACATCTAGGGCTAGAGACAGTCATCAGCAGC
GGCCTGTGTTCCTCATTTGTCCCACCTCCGCCTCCCCCACCATCATCGTC
ATCATCATTCCCCTCCTCTGGCAACGGTGTTTCAAATACAAGGAAAAGAA
GAAGAAAAAGTGGTGATGACAGGAACACACCCCTCAGCCGGACAGGCAGC
ACGCGGCGGAGCAGCAAGCAAATGCGCTTTTCGCCTTTCGAGGCCACGCC
TTCCTCCTCTTTCTCCTCATCCTCCTCCTCCTCCTTTTCTTCCATCCCAA
ACTCCAAGAGCCGCAAGGTCCTCTTCTCTGCCTTGCAAGCCCAATCTTCA
ACACTACCACGTGAGGCCCCCGCCCTTCCTCCCCCTCTCCCTCCCTCCTT
CCTCTCCACCGCCCCCTCCACCCGCGGCAAAACCATTTTCAGTGGCCTCC
AACAAATCTGGACGAGTCTTAAAGGCGGCAGGGGGAAGGCGGACCCTGAT
GGGGGGGGGAAGGCGGGGGAGGGGATAATACGGCCTTCAAAGCCATGCTC
GCCTCGGTTGCCGTTATATACGGTACCAATTTTGGAGCCATCAAATACCT
GGATGAAGCCAACGTGGACGTCTCCATTGTCACGGCAATCCGTTTTGCCC
TGGCCTCGCTGGCCCTGTGCCCTTTCCTCTACAAAGCTCCTTGGCCAGTG
GTGTTGCGTGGGATTGAGGTAGGGGTGTGGGTCTCCGTAGGCTACATTGC
CCAGGCCATTGGTCTTCAAACCACGCAAGCCTCCAAGTCGGCCTTCATCT
GCTCCCTCGCCGTCGTAGTCGTCCCCATTGTCAATGCCATTATTTACAAG
AAGAAAGCCCCTCCCACCACCTGGCTGGCCTCCCTCCTCGCCGTGGCTGG
CGTCGGCCTCCTCACCCTCGAAGGGAAGGGCAACCCCCCCTGCATTGGCG
ACCTATGGTCCCTAGGACAGCCTATAGGCTTCGGAATCGCCTTTGTTCGC
ACAGAACAATGCATGCAAGCCAATAAGGGCGAGGCCCTGGCCATGACAGC
TTCGCAGATGGCGGCAGTCTTGGCATGCTCCATCCTCTGGGTCTCCTTCA
CCCTCACGTCCAACACACCCGACCTAAGCGTCCTGTACGAGCCAGTAAAT
CTCGCGGCCTTGTTCTACACGGGTGTCATCACCAGTGGCATCGCCGTCGT
GGCGGAGAGCGTCGCCCTGGCCCATATCTCCGCCGAGGAGACTACCGTGA
TCCTGTCGACGGAGCCGCTGTGGGCTGCCCTGTTCGGGTCAGTGATATTG
GGGGAGACAATGAGTGGATTTGGCTATTTGGGAGGGGCTGTGATATTGCT
CGGGTGCTTGGTGACTCAGTTGAAGCTGCCGAAGACTTTAGAGAAGCTGC
TAAAGCCGTGGGGGGAAGGAGTGGAGGAGGCAGGGGAGGATTGAGGTATG
TAATGCAGAACGAGGAGGAGGAGTGGTGGTGGTAGTAGTAGCAGCAGTCA
CAACGGCAGCGGCTGGAGCGGCAGATGGATGGAAATAAATGTCAGTGTTC
ACAAAAAGGAAAGGGAATATAAGACAAAGGGAAAAGTAAGAGAGGTACAG
AGATACTATAAGTCAAAGATAAATACGCAGAGATTAACCGACTGAAGATT
AGAGCGGGAAAAGAGCGAGGCATTACGAG
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Coding sequence (CDS) from alignment at chr4:1408388..1410366-

>NO04G05060.1 ID=NO04G05060.1|Name=NO04G05060.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr4:1408388..1410366- (Nannochloropsis oceanica)
ATGCTCGCCTCGGTTGCCGTTATATACGGTACCAATTTTGGAGCCATCAA
ATACCTGGATGAAGCCAACGTGGACGTCTCCATTGTCACGGCAATCCGTT
TTGCCCTGGCCTCGCTGGCCCTGTGCCCTTTCCTCTACAAAGCTCCTTGG
CCAGTGGTGTTGCGTGGGATTGAGGTAGGGGTGTGGGTCTCCGTAGGCTA
CATTGCCCAGGCCATTGGTCTTCAAACCACGCAAGCCTCCAAGTCGGCCT
TCATCTGCTCCCTCGCCGTCGTAGTCGTCCCCATTGTCAATGCCATTATT
TACAAGAAGAAAGCCCCTCCCACCACCTGGCTGGCCTCCCTCCTCGCCGT
GGCTGGCGTCGGCCTCCTCACCCTCGAAGGGAAGGGCAACCCCCCCTGCA
TTGGCGACCTATGGTCCCTAGGACAGCCTATAGGCTTCGGAATCGCCTTT
GTTCGCACAGAACAATGCATGCAAGCCAATAAGGGCGAGGCCCTGGCCAT
GACAGCTTCGCAGATGGCGGCAGTCTTGGCATGCTCCATCCTCTGGGTCT
CCTTCACCCTCACGTCCAACACACCCGACCTAAGCGTCCTGTACGAGCCA
GTAAATCTCGCGGCCTTGTTCTACACGGGTGTCATCACCAGTGGCATCGC
CGTCGTGGCGGAGAGCGTCGCCCTGGCCCATATCTCCGCCGAGGAGACTA
CCGTGATCCTGTCGACGGAGCCGCTGTGGGCTGCCCTGTTCGGGTCAGTG
ATATTGGGGGAGACAATGAGTGGATTTGGCTATTTGGGAGGGGCTGTGAT
ATTGCTCGGGTGCTTGGTGACTCAGTTGAAGCTGCCGAAGACTTTAGAGA
AGCTGCTAAAGCCGTGGGGGGAAGGAGTGGAGGAGGCAGGGGAGGATTGA
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Synonyms
Publications