NO04G05050.1, NO04G05050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05050.1
Unique NameNO04G05050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1268
Alignment locationchr4:1407102..1408369 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1407102..1408369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05050.1 vs.
Match: EWM28929.1 (isopenicillin n synthase [Nannochloropsis gaditana])

HSP 1 Score: 460.7 bits (1184), Expect = 4.500e-126
Identity = 229/371 (61.73%), Postives = 273/371 (73.58%), Query Frame = 0 
Query:   18 AGRPPATEAAYPTSSPLPIIDLTRPSLPALRRACETYGFFYLQGHDISPSLLRAALRECRSFFALPLATKQTLTYADHSQGYQALGTETLNKNEQSQPCTQEGFRLNLTPPSSTQPWPDATLLPHFRPVLEEYHAAMEEVAHRVTRLLQASVGLPPSYLHEDQKAFSPHASAVTRLLHYSPVVSRVEEGVFGCGSHTDWGVLTLLLTEEEGLEVLCPREGGRGEREWLRVPPCR-------EMKDDATEEGGEKKVSE-------------EEEWLLICNLGDLLQRWTNDCLQSTPHRVVNRDGKERYSVPFFFTANPAAVVECLPPFEEEEEEEGGEGKREGGRRKAGKYPPIVVSDYIAQKYRSVTEG 369
            A  P    A   TSS  P+IDLT+PSL  LR AC+TYGFFY++GH + PSLL+AALR+CR+FFALPL  KQ L   DHSQGYQALGTE LN  EQ+QPCTQEGFRL LTPPSS QPWP  +LL  FRPVLEEYHAAME VAHRV RL+ +S+GLPP YLH+   AF P A+A TRLLHY+P+ S VE+GVFGCG+HTDWG LTLLLTE+EGLEV+C  EGG G   W+RVPPC+       ++K D      EK  S+             E EWLLICNLGDLLQRWTND L+STPHRVVNR+GK+R+S+PFFF+A+P AVVECLPPF     + G + + +G  R  GKYPPI+VS+Y+A++ R+ T G
Sbjct:    2 ASSPQVPLAGGITSSSFPVIDLTQPSLSNLREACKTYGFFYIKGHGVKPSLLQAALRQCRAFFALPLPQKQALAGRDHSQGYQALGTEKLNHKEQTQPCTQEGFRLLLTPPSSDQPWPAPSLLHDFRPVLEEYHAAMESVAHRVLRLIVSSIGLPPDYLHDKIHAFHPQAAATTRLLHYAPIPSSVEDGVFGCGAHTDWGCLTLLLTEDEGLEVVCRPEGGEG-GTWVRVPPCQSPGGERGKVKRDIRPGSREKAWSDGSQAGAEACGQGVESEWLLICNLGDLLQRWTNDFLRSTPHRVVNREGKDRFSIPFFFSASPTAVVECLPPFRGIGLKNGVQEEDDGKSRDGGKYPPILVSEYVAERLRTATVG 371
The following BLAST results are available for this feature:
BLAST of NO04G05050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28929.14.500e-12661.73isopenicillin n synthase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05050NO04G05050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05050.1NO04G05050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05050.1.cds1NO04G05050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05050.1 ID=NO04G05050.1|Name=NO04G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp
CTCTAAAACCGGCGATCGACCTAATCCGCTATCTGAAATTTCATTCCCCC
TCTCAACACAAAAACAAAAGCAACAGACATGAAGTCACCAGGACCAACGG
CAGCTCAAGTTCTTGAAGGGGAAGCAGGTGCAGGGAGGCCACCAGCCACG
GAAGCCGCTTACCCAACCTCCTCCCCTCTTCCCATCATTGACCTAACACG
CCCGTCCCTCCCTGCCCTCCGCCGTGCCTGCGAGACCTACGGCTTCTTCT
ATCTACAAGGCCATGACATATCTCCTTCTCTTCTCCGGGCGGCTCTGCGT
GAATGCCGAAGTTTTTTTGCCCTTCCCCTGGCAACCAAACAAACTCTGAC
ATACGCCGATCACAGCCAGGGCTACCAAGCGCTCGGCACCGAGACGCTCA
ATAAGAATGAGCAAAGCCAGCCTTGCACGCAAGAAGGCTTCCGACTCAAC
CTCACGCCTCCTTCTTCTACTCAACCCTGGCCCGATGCCACCCTTCTTCC
TCATTTCCGGCCGGTGTTGGAGGAGTACCACGCAGCAATGGAAGAAGTGG
CACATCGTGTGACACGCCTCCTGCAGGCCTCTGTGGGCTTGCCGCCCTCT
TACCTTCACGAGGACCAAAAAGCATTCTCTCCGCACGCATCGGCGGTAAC
CCGTTTATTGCATTATTCTCCTGTGGTGTCACGTGTGGAGGAGGGTGTTT
TTGGCTGTGGTTCACATACAGATTGGGGGGTACTGACGCTTTTGCTGACA
GAGGAGGAGGGGTTAGAGGTGCTATGCCCAAGGGAGGGAGGAAGAGGAGA
ACGAGAATGGCTGCGAGTTCCTCCGTGTCGGGAAATGAAGGATGATGCCA
CGGAAGAAGGAGGGGAAAAAAAAGTTAGTGAGGAAGAGGAGTGGCTTTTA
ATATGTAACTTGGGTGATCTCCTTCAGCGGTGGACGAACGATTGTTTGCA
GTCTACGCCTCATCGGGTGGTGAACCGAGATGGTAAAGAGAGGTATTCAG
TACCCTTTTTCTTCACGGCGAATCCAGCGGCAGTCGTGGAATGTCTGCCA
CCATTTGAGGAGGAGGAGGAGGAGGAGGGCGGCGAGGGAAAGAGAGAGGG
CGGGAGGAGGAAGGCAGGGAAATATCCCCCGATCGTGGTATCAGACTATA
TTGCGCAGAAATATAGGAGCGTCACAGAGGGGCTGGAGGAGACAGAGATA
GCGAACGGAGGCCAGAAGAGGGGGGGGGAGGAAAGAAAGTGATTTTGTGC
GTATGGGAAGGTGAGGAA
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protein sequence of NO04G05050.1

>NO04G05050.1-protein ID=NO04G05050.1-protein|Name=NO04G05050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MKSPGPTAAQVLEGEAGAGRPPATEAAYPTSSPLPIIDLTRPSLPALRRA
CETYGFFYLQGHDISPSLLRAALRECRSFFALPLATKQTLTYADHSQGYQ
ALGTETLNKNEQSQPCTQEGFRLNLTPPSSTQPWPDATLLPHFRPVLEEY
HAAMEEVAHRVTRLLQASVGLPPSYLHEDQKAFSPHASAVTRLLHYSPVV
SRVEEGVFGCGSHTDWGVLTLLLTEEEGLEVLCPREGGRGEREWLRVPPC
REMKDDATEEGGEKKVSEEEEWLLICNLGDLLQRWTNDCLQSTPHRVVNR
DGKERYSVPFFFTANPAAVVECLPPFEEEEEEEGGEGKREGGRRKAGKYP
PIVVSDYIAQKYRSVTEGLEETEIANGGQKRGGEERK*
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mRNA from alignment at chr4:1407102..1408369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05050.1 ID=NO04G05050.1|Name=NO04G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp|location=Sequence derived from alignment at chr4:1407102..1408369+ (Nannochloropsis oceanica)
CTCTAAAACCGGCGATCGACCTAATCCGCTATCTGAAATTTCATTCCCCC
TCTCAACACAAAAACAAAAGCAACAGACATGAAGTCACCAGGACCAACGG
CAGCTCAAGTTCTTGAAGGGGAAGCAGGTGCAGGGAGGCCACCAGCCACG
GAAGCCGCTTACCCAACCTCCTCCCCTCTTCCCATCATTGACCTAACACG
CCCGTCCCTCCCTGCCCTCCGCCGTGCCTGCGAGACCTACGGCTTCTTCT
ATCTACAAGGCCATGACATATCTCCTTCTCTTCTCCGGGCGGCTCTGCGT
GAATGCCGAAGTTTTTTTGCCCTTCCCCTGGCAACCAAACAAACTCTGAC
ATACGCCGATCACAGCCAGGGCTACCAAGCGCTCGGCACCGAGACGCTCA
ATAAGAATGAGCAAAGCCAGCCTTGCACGCAAGAAGGCTTCCGACTCAAC
CTCACGCCTCCTTCTTCTACTCAACCCTGGCCCGATGCCACCCTTCTTCC
TCATTTCCGGCCGGTGTTGGAGGAGTACCACGCAGCAATGGAAGAAGTGG
CACATCGTGTGACACGCCTCCTGCAGGCCTCTGTGGGCTTGCCGCCCTCT
TACCTTCACGAGGACCAAAAAGCATTCTCTCCGCACGCATCGGCGGTAAC
CCGTTTATTGCATTATTCTCCTGTGGTGTCACGTGTGGAGGAGGGTGTTT
TTGGCTGTGGTTCACATACAGATTGGGGGGTACTGACGCTTTTGCTGACA
GAGGAGGAGGGGTTAGAGGTGCTATGCCCAAGGGAGGGAGGAAGAGGAGA
ACGAGAATGGCTGCGAGTTCCTCCGTGTCGGGAAATGAAGGATGATGCCA
CGGAAGAAGGAGGGGAAAAAAAAGTTAGTGAGGAAGAGGAGTGGCTTTTA
ATATGTAACTTGGGTGATCTCCTTCAGCGGTGGACGAACGATTGTTTGCA
GTCTACGCCTCATCGGGTGGTGAACCGAGATGGTAAAGAGAGGTATTCAG
TACCCTTTTTCTTCACGGCGAATCCAGCGGCAGTCGTGGAATGTCTGCCA
CCATTTGAGGAGGAGGAGGAGGAGGAGGGCGGCGAGGGAAAGAGAGAGGG
CGGGAGGAGGAAGGCAGGGAAATATCCCCCGATCGTGGTATCAGACTATA
TTGCGCAGAAATATAGGAGCGTCACAGAGGGGCTGGAGGAGACAGAGATA
GCGAACGGAGGCCAGAAGAGGGGGGGGGAGGAAAGAAAGTGATTTTGTGC
GTATGGGAAGGTGAGGAA
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Coding sequence (CDS) from alignment at chr4:1407102..1408369+

>NO04G05050.1 ID=NO04G05050.1|Name=NO04G05050.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr4:1407102..1408369+ (Nannochloropsis oceanica)
ATGAAGTCACCAGGACCAACGGCAGCTCAAGTTCTTGAAGGGGAAGCAGG
TGCAGGGAGGCCACCAGCCACGGAAGCCGCTTACCCAACCTCCTCCCCTC
TTCCCATCATTGACCTAACACGCCCGTCCCTCCCTGCCCTCCGCCGTGCC
TGCGAGACCTACGGCTTCTTCTATCTACAAGGCCATGACATATCTCCTTC
TCTTCTCCGGGCGGCTCTGCGTGAATGCCGAAGTTTTTTTGCCCTTCCCC
TGGCAACCAAACAAACTCTGACATACGCCGATCACAGCCAGGGCTACCAA
GCGCTCGGCACCGAGACGCTCAATAAGAATGAGCAAAGCCAGCCTTGCAC
GCAAGAAGGCTTCCGACTCAACCTCACGCCTCCTTCTTCTACTCAACCCT
GGCCCGATGCCACCCTTCTTCCTCATTTCCGGCCGGTGTTGGAGGAGTAC
CACGCAGCAATGGAAGAAGTGGCACATCGTGTGACACGCCTCCTGCAGGC
CTCTGTGGGCTTGCCGCCCTCTTACCTTCACGAGGACCAAAAAGCATTCT
CTCCGCACGCATCGGCGGTAACCCGTTTATTGCATTATTCTCCTGTGGTG
TCACGTGTGGAGGAGGGTGTTTTTGGCTGTGGTTCACATACAGATTGGGG
GGTACTGACGCTTTTGCTGACAGAGGAGGAGGGGTTAGAGGTGCTATGCC
CAAGGGAGGGAGGAAGAGGAGAACGAGAATGGCTGCGAGTTCCTCCGTGT
CGGGAAATGAAGGATGATGCCACGGAAGAAGGAGGGGAAAAAAAAGTTAG
TGAGGAAGAGGAGTGGCTTTTAATATGTAACTTGGGTGATCTCCTTCAGC
GGTGGACGAACGATTGTTTGCAGTCTACGCCTCATCGGGTGGTGAACCGA
GATGGTAAAGAGAGGTATTCAGTACCCTTTTTCTTCACGGCGAATCCAGC
GGCAGTCGTGGAATGTCTGCCACCATTTGAGGAGGAGGAGGAGGAGGAGG
GCGGCGAGGGAAAGAGAGAGGGCGGGAGGAGGAAGGCAGGGAAATATCCC
CCGATCGTGGTATCAGACTATATTGCGCAGAAATATAGGAGCGTCACAGA
GGGGCTGGAGGAGACAGAGATAGCGAACGGAGGCCAGAAGAGGGGGGGGG
AGGAAAGAAAGTGA
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Synonyms
Publications