NO04G04980.1, NO04G04980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04980.1
Unique NameNO04G04980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr4:1379715..1381904 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1379715..1381904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04980.1 vs.
Match: EWM28890.1 (phosphoserine phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 1.500e-99
Identity = 185/268 (69.03%), Postives = 216/268 (80.60%), Query Frame = 0 
Query:   10 LARGAQGSTVATALRGGAAWCFVPW---SCSTHHRTRLPVRPLRAHISTHKGLAPQKAKDILKKAQAVCFDVDSTVCAEEGIDVLAEFLGQGQAVADLTAKAMGGTVLFQDALQGRLDLIKPSRAHFADCIAKHPATLSNGVKQFIDILHKRGTAVYLVSGGFRLMIEPVADRLSIPHHRIYANTVLFKEDGTYKGFDPQEPTSRDGGKPAVVKSLKERFGYVDVVMIGDGATDMQARPPADAFVGYGGVTVRENVAKGADWFVYNFQ 275
            L + A  +T  T+L+   +  F+P          R R   RP++A  ST++GL P +AKD+LKKAQAVCFDVDSTVCAEEGIDVLA FLGQGQAVADLTAKAMGG+VLFQDAL+GRLDLIKPSRA   +C+ +HPATLS GVK+F+  L  RGTAVYLVSGGFRLMIEPVADRL +P  RIYANT+LF E+G+YK FDP EPTSRDGGK AV+KSLKE+ GY DV+M+GDGATDMQARPPADAF+GYGGV VR+ V +GADWFV +FQ
Sbjct:   11 LTKQAWQTTSGTSLKMTVSLAFIPAFNIHVGAFSRVRYSSRPVKAGFSTYQGLDPDRAKDVLKKAQAVCFDVDSTVCAEEGIDVLAAFLGQGQAVADLTAKAMGGSVLFQDALKGRLDLIKPSRADIQNCLLRHPATLSPGVKEFVGRLQARGTAVYLVSGGFRLMIEPVADRLLVPRDRIYANTLLFAENGSYKDFDPNEPTSRDGGKAAVIKSLKEKHGYQDVLMVGDGATDMQARPPADAFIGYGGVVVRDPVLQGADWFVRSFQ 278
The following BLAST results are available for this feature:
BLAST of NO04G04980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28890.11.500e-9969.03phosphoserine phosphatase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04980NO04G04980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04980.1NO04G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04980.1.cds1NO04G04980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds2NO04G04980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds3NO04G04980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds4NO04G04980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds5NO04G04980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds6NO04G04980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds7NO04G04980.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds8NO04G04980.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04980.1.cds9NO04G04980.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC
GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT
GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA
GCGCATATCTCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACAT
ACTTAAGAAAGCACAGGCCGTGTGTTTCGATGTGGACTCCACCGTGTGCG
CTGAGGAAGGCATCGATGTCCTGGCGGAGTTTCTGGGGCAAGGACAAGCC
GTCGCTGACCTGACTGCTAAGGCCATGGGTGGCACGGTGCTTTTCCAAGA
TGCCCTCCAAGGCCGCTTGGATTTAATCAAGCCCTCCCGCGCCCATTTCG
CGGACTGCATCGCCAAGCACCCTGCCACGCTCTCTAACGGGGTGAAACAG
TTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCGG
GGGCTTCCGCCTGATGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCC
ACCATCGTATCTATGCCAACACGGTTCTGTTCAAAGAGGATGGCACCTAC
AAGGGTTTCGACCCCCAAGAGCCCACTTCCCGTGACGGGGGGAAGCCAGC
TGTGGTCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGA
TAGGCGATGGCGCCACGGACATGCAGGCACGGCCCCCTGCAGATGCCTTC
GTGGGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGA
CTGGTTTGTCTACAACTTCCAGGAGCTGATCGACGTGGTTAAGTCGTAA
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protein sequence of NO04G04980.1

>NO04G04980.1-protein ID=NO04G04980.1-protein|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MTVAGNVLLLARGAQGSTVATALRGGAAWCFVPWSCSTHHRTRLPVRPLR
AHISTHKGLAPQKAKDILKKAQAVCFDVDSTVCAEEGIDVLAEFLGQGQA
VADLTAKAMGGTVLFQDALQGRLDLIKPSRAHFADCIAKHPATLSNGVKQ
FIDILHKRGTAVYLVSGGFRLMIEPVADRLSIPHHRIYANTVLFKEDGTY
KGFDPQEPTSRDGGKPAVVKSLKERFGYVDVVMIGDGATDMQARPPADAF
VGYGGVTVRENVAKGADWFVYNFQELIDVVKS*
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mRNA from alignment at chr4:1379715..1381904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr4:1379715..1381904- (Nannochloropsis oceanica)
ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC
GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT
GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA
GTACGTTTTCGTGTCGAGTGGGCCTGCCAGACACATGCAGATGCTCATCG
CATCCCTCCCTCCTCTCCCACTCTTCTCCTTTCCCTCCTAGGCGCATATC
TCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACATACTTAAGAA
AGCACAGGTTAGCTGCCGAAGAAGAAGGTTTGGAGAGACCAAGGCCCTAA
TGCAAGGTGGTAGTTGTCTCTGACCTCTCTTCTCCCTTCCTTCCCGTCCC
TCCCTCCCCCCCTCCCTCCCCCCCCCCTCTTGGACGGCAGGCCGTGTGTT
TCGATGTGGACTCCACCGTGTGCGCTGAGGAAGGCATCGATGTCCTGGCG
GAGTTTCTGGGGCAAGGACAAGCCGTCGCTGACCTGACTGCTAAGTAAGA
AGGGAGGGACAGAGGGGAGGGCGGGAAGGAGAGCAAGACGCCAAGAGGAG
GGCACAGGAGAGGAGGTATGGCCTCGTGGAGGCAGCAGGGCGAGGATGGA
GCAAGAAAACGCTTCTCATCCGACATACGGACGCCAAATACATACATACA
TGCATCAATATGTACATATCCATTAAAATATCTATTCAAACGAAAATAAA
CGTACCGAAGAGAGTATCAACATTACAGTAAGGCACTCACTCTTCCGTCT
CCATTCCCCCTCTTCCCTCTGTCCCTCCCTCTTCCTTCCCTCTTTCCAGG
GCCATGGGTGGCACGGTGCTTTTCCAAGATGCCCTCCAAGGCCGCTTGGA
TTTAATCAAGCCCTCCCGCGCCCATTTCGCGGACTGCATCGCCAAGCACC
CTGCCACGCTCTCTAACGGGTAGGCATGTCCCTTCCTCCCTCCTGACTTA
CCCTTGTGTTTATAATCACTATTCCTATTGGACCGTGGCAGGGTGAAACA
GTTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCG
GGGGCTTCCGCCTGGTGCGTGCCGGGGGGGGGAAGGGAGGGAGGGAGGGA
AGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGATGAAGGGAAGACTCTGTA
CTAAGGGGGGCTATTTCTAGCTCATTCCCCTATCCAGGAACGTATTAATA
TGTATGTTACCGATGTTTAAGTGGGTGGTAGATTGGCAGCGAAACCTGCA
CGTCCGCGTGTACGACAAAACCGGATCGACAAGACGAACACTCCCTCCAT
CGTCTCCTCACCCCTCCCTCCTCCTTCCCTCCCTTCATTCCTCCCTCAGA
TGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCCACCATCGTATCTAT
GCCAACACGGTTCTGTTCAAAGAGGATGGCACCTACAAGGGTTTCGACCC
CCAAGAGCCCACTTCCCGTAAGGATGGAAAGAGGAGGGAAGGAGGGAGGG
AGGGAGGGAGGGAGGGGGTAGAGAGACGGGAAGCTAAGGTGGACGAAAGT
GAGAGAATTTCTCCGTAGCCAACACTCTTTTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCGCCGCAGGTGACGGGGGGAAGCCAGCTGTGG
TCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGATAGGC
GATGGCGCCACGGACATGCAGGTAGGGAGGGAGGGAGGGAGGAAGGAGGG
AAGGAGGGAGGGGGAAGGGAGGGAGGGGAAAGGAGGGAGGGAGGGAGGGG
AGGGGAGGGGGTTTGAGACTTGAGCGATATGTACATATATATGTATGTAT
ATTTTATGTCATTGTTAATTTTCCTGGCCTTTCCTCCACATCCCTTCCCT
TTTGCTCCTTTTTCCACCTTCAGGCACGGCCCCCTGCAGATGCCTTCGTG
GGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGACTG
GTTTGTCTACAACTTCCAGGTACGTGGGTGTTGGGCAAGAAGGCAATGAA
ATAAAAACGGGGGAGATAAGTGGATGCTGACTGGATCTGAATCTCCTTCC
TACCACATCACAGGAGCTGATCGACGTGGTTAAGTCGTAA
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Coding sequence (CDS) from alignment at chr4:1379715..1381904-

>NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr4:1379715..1381904- (Nannochloropsis oceanica)
ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC
GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT
GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA
GCGCATATCTCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACAT
ACTTAAGAAAGCACAGGCCGTGTGTTTCGATGTGGACTCCACCGTGTGCG
CTGAGGAAGGCATCGATGTCCTGGCGGAGTTTCTGGGGCAAGGACAAGCC
GTCGCTGACCTGACTGCTAAGGCCATGGGTGGCACGGTGCTTTTCCAAGA
TGCCCTCCAAGGCCGCTTGGATTTAATCAAGCCCTCCCGCGCCCATTTCG
CGGACTGCATCGCCAAGCACCCTGCCACGCTCTCTAACGGGGTGAAACAG
TTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCGG
GGGCTTCCGCCTGATGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCC
ACCATCGTATCTATGCCAACACGGTTCTGTTCAAAGAGGATGGCACCTAC
AAGGGTTTCGACCCCCAAGAGCCCACTTCCCGTGACGGGGGGAAGCCAGC
TGTGGTCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGA
TAGGCGATGGCGCCACGGACATGCAGGCACGGCCCCCTGCAGATGCCTTC
GTGGGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGA
CTGGTTTGTCTACAACTTCCAGGAGCTGATCGACGTGGTTAAGTCGTAA
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Synonyms
Publications