NO04G04940.1, NO04G04940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04940.1
Unique NameNO04G04940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1553
Alignment locationchr4:1366970..1368522 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1366970..1368522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04940.1 vs.
Match: EWM28886.1 (tor signaling pathway regulator [Nannochloropsis gaditana])

HSP 1 Score: 393.3 bits (1009), Expect = 1.100e-105
Identity = 243/463 (52.48%), Postives = 314/463 (67.82%), Query Frame = 0 
Query:    9 RLAALSLDRATPSRSTAAPDHQQNQVSTDKPLSALFREAQALVARLDDSIPCPCPYFSSSSPPSSSSSSSPSASSSEADDLQKGLALLYEISKKVHGLGLLSSNEKVDDVATADLKYVLVDFYLGVLHGKVPMEGGRVGGGGDARRRGMEREKRHWEAFMLRCEGLGVLKGEDKRAWEAERRMEEEEGEEEEEEEEGGHDNDRRRRAVLPTSKGSIGEGGMDAGMQRALKIERFRRERAGKERLRELNYLHDKLQQKKRGRKRGEDGDEEEEEEGELEEVERERTKLWIEMGARKVLDEWPMLRQEMKLLSMMQRVVGGGGVGVGERGEGRGDTRQRPGQNGRACSSSSGMQVTHIDKGGPGGQLRIRQEELRARVFQPGYNLPTVSLEEFAAQEVAAAEEREAKAKLAAKAPAGPRRYKQLEEEGKEDEAELVEKAAFHDRAWDDWKDANPRGSGNKMGKRF 472
            +LAALSLD      ++ A  H Q+ +  ++PL  LF+E QALV RL               P + S S   +++ +  DD+++GL L  EIS++VH LGLLSSNE++DDVATADLKYVLVDFYLG+LH +VP+EG +  G    R+ G+ +    +E +M RCE LG+LKGED++AW   R  EEEEG  +      GHD+D+RRRAVLPT    +  G M+  +QR  KIERFR+ +  +ERLR LN+L  K++   +    GE G   EE  GE EE+ERER+KLWI+MG  KVLDEW ML+QE ++L+MM+                +G  R++  +  +  S+  G+QVTHIDK GPGGQLRIRQE+LRARVFQPGY LPTVSLEEFAAQE+AAA+ER+AK +  A   + PRRY QLEEEGKED+A LVE+AA+ DR WDDWKDA+PRGSGNK+GKRF
Sbjct:    4 KLAALSLD--PKYIASTASVHVQDSL-LERPLCTLFQEGQALVERLTHE----------GGPSNPSPSPLDASARAGNDDIRQGLTLFNEISRRVHSLGLLSSNEELDDVATADLKYVLVDFYLGILHSQVPLEGEK--GDMGKRQIGIGKALTSFETYMQRCEQLGLLKGEDQQAWAGARAEEEEEGSAD------GHDDDQRRRAVLPTKGIGVSSGNMN--VQRTQKIERFRKLKTARERLRVLNHLLVKVKDSTKEAGAGEQGKNREEPSGEEEELERERSKLWIKMGVWKVLDEWTMLKQEQEILAMMRT---------------QGGERRKEEKGTQGSSARGGVQVTHIDKTGPGGQLRIRQEDLRARVFQPGYTLPTVSLEEFAAQELAAAQERKAKEERRAGNLSEPRRYAQLEEEGKEDDARLVEEAAYQDRTWDDWKDAHPRGSGNKLGKRF 428
The following BLAST results are available for this feature:
BLAST of NO04G04940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28886.11.100e-10552.48tor signaling pathway regulator [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04940NO04G04940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04940.1NO04G04940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04940.1.cds1NO04G04940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04940.1 ID=NO04G04940.1|Name=NO04G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
TAGAAGCTTACGCTATTCCGGTCCTCACTCCAGCACTTTCCGATGGCCGA
CCTCCTTCCCTCCGAACGCCTCGCCGCCCTCTCACTTGACCGCGCCACGC
CCAGCCGCAGTACAGCCGCGCCAGACCATCAACAAAACCAAGTCAGCACA
GACAAACCTCTGTCCGCCCTCTTCCGGGAAGCCCAAGCACTCGTCGCTCG
CCTGGATGACAGCATCCCCTGCCCCTGCCCCTACTTCTCCTCCTCCTCCC
CCCCCTCCTCCTCCTCCTCCTCCTCTCCCTCCGCCTCCAGCAGCGAAGCC
GACGACCTCCAAAAAGGCCTGGCGTTATTGTACGAGATCTCCAAAAAGGT
TCACGGGCTTGGATTGTTGTCTTCGAACGAAAAAGTAGATGACGTAGCCA
CGGCTGACTTGAAATACGTCCTGGTTGATTTTTACCTGGGGGTACTGCAT
GGTAAAGTCCCGATGGAGGGCGGGAGGGTGGGTGGGGGAGGGGATGCGAG
GAGGAGAGGGATGGAGAGGGAGAAGAGACACTGGGAGGCTTTCATGCTGA
GGTGTGAGGGCTTGGGTGTCCTGAAGGGTGAGGATAAAAGGGCGTGGGAG
GCGGAGAGGAGGATGGAGGAAGAGGAGGGGGAGGAGGAAGAGGAAGAAGA
GGAAGGGGGCCATGATAATGATAGACGACGACGGGCGGTGTTGCCGACAA
GCAAAGGAAGTATAGGTGAAGGAGGGATGGATGCAGGGATGCAGCGAGCG
TTGAAAATCGAAAGGTTTCGAAGGGAAAGGGCAGGAAAGGAAAGGCTGCG
TGAGCTCAACTATTTGCACGACAAATTACAGCAAAAGAAGAGGGGTAGAA
AGCGCGGGGAGGATGGGGACGAGGAGGAGGAAGAGGAGGGGGAGTTGGAG
GAGGTGGAGAGGGAGAGGACGAAGTTGTGGATTGAGATGGGGGCGAGAAA
AGTCTTAGATGAGTGGCCTATGCTTCGGCAGGAAATGAAACTTTTGTCGA
TGATGCAGAGGGTAGTTGGAGGTGGAGGAGTAGGAGTAGGAGAAAGGGGG
GAAGGGAGGGGAGATACACGGCAACGCCCCGGCCAGAACGGCAGGGCGTG
CAGCAGTAGTAGTGGCATGCAGGTTACTCACATCGATAAGGGGGGACCTG
GAGGACAGCTCCGCATTCGGCAAGAAGAACTTCGAGCTCGTGTGTTTCAG
CCAGGCTACAACCTTCCAACTGTCTCTCTTGAGGAGTTCGCGGCTCAAGA
AGTTGCAGCGGCGGAAGAACGAGAGGCCAAGGCAAAGCTAGCGGCGAAGG
CACCAGCAGGTCCAAGAAGGTACAAGCAATTGGAGGAGGAAGGGAAGGAG
GACGAGGCGGAGCTGGTGGAGAAGGCAGCGTTCCATGACCGCGCCTGGGA
TGACTGGAAGGATGCCAACCCGCGGGGGAGTGGGAATAAGATGGGGAAGC
GATTTTGAGTTGGGAAAAAGTAAAAGTCAGGACAAAGACGAAAAAAAGGG
ACAGTGCTGTAATATCTTGTGCGTTCTTATCAATATATAGCTAGCGCTGG
GGT
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protein sequence of NO04G04940.1

>NO04G04940.1-protein ID=NO04G04940.1-protein|Name=NO04G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MADLLPSERLAALSLDRATPSRSTAAPDHQQNQVSTDKPLSALFREAQAL
VARLDDSIPCPCPYFSSSSPPSSSSSSSPSASSSEADDLQKGLALLYEIS
KKVHGLGLLSSNEKVDDVATADLKYVLVDFYLGVLHGKVPMEGGRVGGGG
DARRRGMEREKRHWEAFMLRCEGLGVLKGEDKRAWEAERRMEEEEGEEEE
EEEEGGHDNDRRRRAVLPTSKGSIGEGGMDAGMQRALKIERFRRERAGKE
RLRELNYLHDKLQQKKRGRKRGEDGDEEEEEEGELEEVERERTKLWIEMG
ARKVLDEWPMLRQEMKLLSMMQRVVGGGGVGVGERGEGRGDTRQRPGQNG
RACSSSSGMQVTHIDKGGPGGQLRIRQEELRARVFQPGYNLPTVSLEEFA
AQEVAAAEEREAKAKLAAKAPAGPRRYKQLEEEGKEDEAELVEKAAFHDR
AWDDWKDANPRGSGNKMGKRF*
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mRNA from alignment at chr4:1366970..1368522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04940.1 ID=NO04G04940.1|Name=NO04G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at chr4:1366970..1368522+ (Nannochloropsis oceanica)
TAGAAGCTTACGCTATTCCGGTCCTCACTCCAGCACTTTCCGATGGCCGA
CCTCCTTCCCTCCGAACGCCTCGCCGCCCTCTCACTTGACCGCGCCACGC
CCAGCCGCAGTACAGCCGCGCCAGACCATCAACAAAACCAAGTCAGCACA
GACAAACCTCTGTCCGCCCTCTTCCGGGAAGCCCAAGCACTCGTCGCTCG
CCTGGATGACAGCATCCCCTGCCCCTGCCCCTACTTCTCCTCCTCCTCCC
CCCCCTCCTCCTCCTCCTCCTCCTCTCCCTCCGCCTCCAGCAGCGAAGCC
GACGACCTCCAAAAAGGCCTGGCGTTATTGTACGAGATCTCCAAAAAGGT
TCACGGGCTTGGATTGTTGTCTTCGAACGAAAAAGTAGATGACGTAGCCA
CGGCTGACTTGAAATACGTCCTGGTTGATTTTTACCTGGGGGTACTGCAT
GGTAAAGTCCCGATGGAGGGCGGGAGGGTGGGTGGGGGAGGGGATGCGAG
GAGGAGAGGGATGGAGAGGGAGAAGAGACACTGGGAGGCTTTCATGCTGA
GGTGTGAGGGCTTGGGTGTCCTGAAGGGTGAGGATAAAAGGGCGTGGGAG
GCGGAGAGGAGGATGGAGGAAGAGGAGGGGGAGGAGGAAGAGGAAGAAGA
GGAAGGGGGCCATGATAATGATAGACGACGACGGGCGGTGTTGCCGACAA
GCAAAGGAAGTATAGGTGAAGGAGGGATGGATGCAGGGATGCAGCGAGCG
TTGAAAATCGAAAGGTTTCGAAGGGAAAGGGCAGGAAAGGAAAGGCTGCG
TGAGCTCAACTATTTGCACGACAAATTACAGCAAAAGAAGAGGGGTAGAA
AGCGCGGGGAGGATGGGGACGAGGAGGAGGAAGAGGAGGGGGAGTTGGAG
GAGGTGGAGAGGGAGAGGACGAAGTTGTGGATTGAGATGGGGGCGAGAAA
AGTCTTAGATGAGTGGCCTATGCTTCGGCAGGAAATGAAACTTTTGTCGA
TGATGCAGAGGGTAGTTGGAGGTGGAGGAGTAGGAGTAGGAGAAAGGGGG
GAAGGGAGGGGAGATACACGGCAACGCCCCGGCCAGAACGGCAGGGCGTG
CAGCAGTAGTAGTGGCATGCAGGTTACTCACATCGATAAGGGGGGACCTG
GAGGACAGCTCCGCATTCGGCAAGAAGAACTTCGAGCTCGTGTGTTTCAG
CCAGGCTACAACCTTCCAACTGTCTCTCTTGAGGAGTTCGCGGCTCAAGA
AGTTGCAGCGGCGGAAGAACGAGAGGCCAAGGCAAAGCTAGCGGCGAAGG
CACCAGCAGGTCCAAGAAGGTACAAGCAATTGGAGGAGGAAGGGAAGGAG
GACGAGGCGGAGCTGGTGGAGAAGGCAGCGTTCCATGACCGCGCCTGGGA
TGACTGGAAGGATGCCAACCCGCGGGGGAGTGGGAATAAGATGGGGAAGC
GATTTTGAGTTGGGAAAAAGTAAAAGTCAGGACAAAGACGAAAAAAAGGG
ACAGTGCTGTAATATCTTGTGCGTTCTTATCAATATATAGCTAGCGCTGG
GGT
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Coding sequence (CDS) from alignment at chr4:1366970..1368522+

>NO04G04940.1 ID=NO04G04940.1|Name=NO04G04940.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr4:1366970..1368522+ (Nannochloropsis oceanica)
ATGGCCGACCTCCTTCCCTCCGAACGCCTCGCCGCCCTCTCACTTGACCG
CGCCACGCCCAGCCGCAGTACAGCCGCGCCAGACCATCAACAAAACCAAG
TCAGCACAGACAAACCTCTGTCCGCCCTCTTCCGGGAAGCCCAAGCACTC
GTCGCTCGCCTGGATGACAGCATCCCCTGCCCCTGCCCCTACTTCTCCTC
CTCCTCCCCCCCCTCCTCCTCCTCCTCCTCCTCTCCCTCCGCCTCCAGCA
GCGAAGCCGACGACCTCCAAAAAGGCCTGGCGTTATTGTACGAGATCTCC
AAAAAGGTTCACGGGCTTGGATTGTTGTCTTCGAACGAAAAAGTAGATGA
CGTAGCCACGGCTGACTTGAAATACGTCCTGGTTGATTTTTACCTGGGGG
TACTGCATGGTAAAGTCCCGATGGAGGGCGGGAGGGTGGGTGGGGGAGGG
GATGCGAGGAGGAGAGGGATGGAGAGGGAGAAGAGACACTGGGAGGCTTT
CATGCTGAGGTGTGAGGGCTTGGGTGTCCTGAAGGGTGAGGATAAAAGGG
CGTGGGAGGCGGAGAGGAGGATGGAGGAAGAGGAGGGGGAGGAGGAAGAG
GAAGAAGAGGAAGGGGGCCATGATAATGATAGACGACGACGGGCGGTGTT
GCCGACAAGCAAAGGAAGTATAGGTGAAGGAGGGATGGATGCAGGGATGC
AGCGAGCGTTGAAAATCGAAAGGTTTCGAAGGGAAAGGGCAGGAAAGGAA
AGGCTGCGTGAGCTCAACTATTTGCACGACAAATTACAGCAAAAGAAGAG
GGGTAGAAAGCGCGGGGAGGATGGGGACGAGGAGGAGGAAGAGGAGGGGG
AGTTGGAGGAGGTGGAGAGGGAGAGGACGAAGTTGTGGATTGAGATGGGG
GCGAGAAAAGTCTTAGATGAGTGGCCTATGCTTCGGCAGGAAATGAAACT
TTTGTCGATGATGCAGAGGGTAGTTGGAGGTGGAGGAGTAGGAGTAGGAG
AAAGGGGGGAAGGGAGGGGAGATACACGGCAACGCCCCGGCCAGAACGGC
AGGGCGTGCAGCAGTAGTAGTGGCATGCAGGTTACTCACATCGATAAGGG
GGGACCTGGAGGACAGCTCCGCATTCGGCAAGAAGAACTTCGAGCTCGTG
TGTTTCAGCCAGGCTACAACCTTCCAACTGTCTCTCTTGAGGAGTTCGCG
GCTCAAGAAGTTGCAGCGGCGGAAGAACGAGAGGCCAAGGCAAAGCTAGC
GGCGAAGGCACCAGCAGGTCCAAGAAGGTACAAGCAATTGGAGGAGGAAG
GGAAGGAGGACGAGGCGGAGCTGGTGGAGAAGGCAGCGTTCCATGACCGC
GCCTGGGATGACTGGAAGGATGCCAACCCGCGGGGGAGTGGGAATAAGAT
GGGGAAGCGATTTTGA
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Synonyms
Publications