NO04G04850.1, NO04G04850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04850.1
Unique NameNO04G04850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1506
Alignment locationchr4:1323691..1325482 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1323691..1325482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04850.1 vs.
Match: EWM28871.1 (hypothetical protein Naga_100095g7 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 80/185 (43.24%), Postives = 105/185 (56.76%), Query Frame = 0 
Query:   63 WWRGMPSPRRLLEEEEDSGEEEDEEE--------EEEEEEEEEEAETEPEEQGQEKIEEQNEIDQHGGSSDEDSCATEPDEARMETGMWGVEETETIANLRRQGLPIYFPSGKFKGVGLRALKRTVEGRAYISEYLAKKPGWFQRCNVPENMALLESLSRLRMLRRVTDLQGKVVPASRMLRDWK 240
            W R +   +R  E ++     ++  E        + EEE E EE     EE+ +E   E   +D+        S  TEPDE  M       +E  T   LR++GLPIY   G FKGV L AL R   GR Y+ ++LA+KPGWF+R +VP NMALL SLSRLR+LR VTDL G VVPA+RM+R+W+
Sbjct:   47 WRRSLRHSKRPRERDKKEDVNKNMAETFLPLCLWDFEEEGEVEERTVVVEEEVKEAYGEDTRLDECSTEGQIASNVTEPDEEWMLADTSKFDEKATSIQLRKEGLPIYVTFGAFKGVSLPALGRMEGGRQYLDQFLARKPGWFERGSVPANMALLRSLSRLRLLRYVTDLNGNVVPATRMVRNWE 231
The following BLAST results are available for this feature:
BLAST of NO04G04850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28871.12.100e-1843.24hypothetical protein Naga_100095g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04850NO04G04850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04850.1NO04G04850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04850.1.cds1NO04G04850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04850.1.cds2NO04G04850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04850.1 ID=NO04G04850.1|Name=NO04G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
CGATTTTGAAGAAGCATGGCCCGCGCAGCACCGCGGGGACGGCAAATCCT
ATAGCTCCTCATTTTTTGTCAAGAAGCCGGGCCTGTTCAACTACTCACAT
CACACCCACAATACGAAGCACAATTATCGATTCCAGGAGCTCTGCTAAAG
CTGCACTCACTGCTACCATGGCGGCCTCCGCCAGCGACAAACACTCTTCT
TCTTTTTCAGGAGGCGGAGCCATGTCTTCAACCCCGTCCCTCTCTTATGT
AATCTCCCGTGGCAGCGGTCTGACCACACGTGCACATGAGAGTGACGAGG
AAGAAGATAAGAATGAGCAGGGCCTGTTTTGTATTTCTCACTCGCGTCGG
TGGTGGTGGCGGGGTATGCCGTCCCCTCGTCGTCTTCTGGAGGAGGAGGA
GGATTCGGGAGAGGAGGAGGATGAGGAAGAGGAAGAGGAGGAAGAGGAGG
AAGAGGAGGAAGCCGAGACGGAGCCAGAGGAGCAGGGGCAGGAGAAGATC
GAGGAGCAAAACGAAATAGACCAGCACGGTGGCAGTAGTGACGAGGACAG
CTGTGCCACTGAGCCGGATGAGGCGCGGATGGAGACTGGCATGTGGGGCG
TTGAAGAGACGGAAACGATCGCGAATTTGCGTCGGCAGGGTCTTCCTATA
TACTTCCCATCGGGTAAATTTAAAGGAGTCGGCTTGCGCGCACTTAAACG
TACTGTCGAAGGGCGAGCATATATCTCCGAATACCTCGCCAAGAAACCTG
GGTGGTTCCAGCGCTGCAATGTACCTGAGAATATGGCGCTTCTCGAGTCC
CTCTCCCGCCTGCGCATGCTCCGCCGCGTGACGGACCTTCAGGGTAAGGT
CGTCCCCGCCAGCCGAATGCTTCGAGATTGGAAGAAACAAGTGACCCCGA
AGGCATTCATTTTCAAGCGGCAGCGACGGACGGCGTCATGATCGCGCGGC
CGCCTTAGCGTCGTCAGCGGTGAAGGGAGTGAGGAAGACAATATCTGGTA
ATGGTGGTTGTGGGATATAATTAGACGGAGGGGGAGGGCCAGCGTCGCCT
TGGCCTGGAAAGGAGATACACACACATTAAACATATGCTCTCCAGACGGC
TTTGTATACATCTATTATGTATTTACATGTATATATATCTGTATATACAA
TACATGTACATGTGTTATATGCAATCAATCTGTTTAAACGGCGTGATTTT
TTATATGGAGGAGGATAAGGACGGGGGTGTAGTGATCGTTGATGTAGGCT
CTTTGGACGTAGATATAAAACCTTCGAATGGACTCATGGCTCTGCGGCGT
TGTCTTCTCCTTCGGGTTTTCTTTGCATGAAGGGAGAATAAGATATCCTG
TAGGCTCACCCTCCTGCCCTGTTCATTCCTTGCCTCGGTCCTCGGTTCTC
TTGCTTCTTCTACTTGTTCATTCCGTGAAAAAAGTCTTCTGGCGCGACAT
TACCAGAGCCGATGGCCAGCAATAAATTTGGAAGTTAAATTAATATGGCA
TCATGA
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protein sequence of NO04G04850.1

>NO04G04850.1-protein ID=NO04G04850.1-protein|Name=NO04G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MAASASDKHSSSFSGGGAMSSTPSLSYVISRGSGLTTRAHESDEEEDKNE
QGLFCISHSRRWWWRGMPSPRRLLEEEEDSGEEEDEEEEEEEEEEEEEAE
TEPEEQGQEKIEEQNEIDQHGGSSDEDSCATEPDEARMETGMWGVEETET
IANLRRQGLPIYFPSGKFKGVGLRALKRTVEGRAYISEYLAKKPGWFQRC
NVPENMALLESLSRLRMLRRVTDLQGKVVPASRMLRDWKKQVTPKAFIFK
RQRRTAS*
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mRNA from alignment at chr4:1323691..1325482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04850.1 ID=NO04G04850.1|Name=NO04G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr4:1323691..1325482- (Nannochloropsis oceanica)
CGATTTTGAAGAAGCATGGCCCGCGCAGCACCGCGGGGACGGCAAATCCT
ATAGCTCCTCATTTTTTGTCAAGAAGCCGGGCCTGTTCAACTACTCACAT
CACACCCACAATACGAAGCACAATTATCGATTCCAGGAGCTCTGCTAAAG
CTGCACTCACTGCTACCATGGCGGCCTCCGCCAGCGACAAACACTCTTCT
TCTTTTTCAGGAGGCGGAGCCATGTCTTCAACCCCGTCCCTCTCTTATGT
AATCTCCCGTGGCAGCGGTCTGACCACACGTGCACATGAGAGTGACGAGG
AAGAAGATAAGAATGAGCAGGGCCTGTTTTGTATTTCTCACTCGCGTCGG
TGGTGGTGGCGGGGTATGCCGTCCCCTCGTCGTCTTCTGGAGGAGGAGGA
GGATTCGGGAGAGGAGGAGGATGAGGAAGAGGAAGAGGAGGAAGAGGAGG
AAGAGGAGGAAGCCGAGACGGAGCCAGAGGAGCAGGGGCAGGAGAAGATC
GAGGAGCAAAACGAAATAGACCAGCACGGTGGCAGTAGTGACGAGGACAG
CTGTGCCACTGAGCCGGATGAGGCGCGGATGGAGACTGGCATGTGGGGCG
TTGAAGAGACGGAAACGATCGCGAATTTGCGTCGGCAGGGTCTTCCTATA
TACTTCCCATCGGGTAAATTTAAAGGAGTCGGCTTGCGCGCACTTAAACG
TACTGTCGAAGGGCGAGGTGAGTGCGTGTATGTGTACAATGAGGAAGGAG
GGAGGAAGTGCATAGGTGCTGGATGAGAGGGTGCAAAGAGTAAAAAGGAC
AGAGTCACGAGGGCGAAATATTGGATTGCCTCCCAACTTGTATCCCGTTT
CCTGTCTCAGACCGCATGCCGGCAATGCTCTTGTATTACACCGCCTTAAT
GCCTCTTCGATCCGCTCTAACTCAAGCGGCATTTCTTCCTCCCTTCTTTT
CCTCCCCTTCCTCTCCCCTTTTCTCTCTCCTTCCCTCTTTTTGAACCCAC
CAGCATATATCTCCGAATACCTCGCCAAGAAACCTGGGTGGTTCCAGCGC
TGCAATGTACCTGAGAATATGGCGCTTCTCGAGTCCCTCTCCCGCCTGCG
CATGCTCCGCCGCGTGACGGACCTTCAGGGTAAGGTCGTCCCCGCCAGCC
GAATGCTTCGAGATTGGAAGAAACAAGTGACCCCGAAGGCATTCATTTTC
AAGCGGCAGCGACGGACGGCGTCATGATCGCGCGGCCGCCTTAGCGTCGT
CAGCGGTGAAGGGAGTGAGGAAGACAATATCTGGTAATGGTGGTTGTGGG
ATATAATTAGACGGAGGGGGAGGGCCAGCGTCGCCTTGGCCTGGAAAGGA
GATACACACACATTAAACATATGCTCTCCAGACGGCTTTGTATACATCTA
TTATGTATTTACATGTATATATATCTGTATATACAATACATGTACATGTG
TTATATGCAATCAATCTGTTTAAACGGCGTGATTTTTTATATGGAGGAGG
ATAAGGACGGGGGTGTAGTGATCGTTGATGTAGGCTCTTTGGACGTAGAT
ATAAAACCTTCGAATGGACTCATGGCTCTGCGGCGTTGTCTTCTCCTTCG
GGTTTTCTTTGCATGAAGGGAGAATAAGATATCCTGTAGGCTCACCCTCC
TGCCCTGTTCATTCCTTGCCTCGGTCCTCGGTTCTCTTGCTTCTTCTACT
TGTTCATTCCGTGAAAAAAGTCTTCTGGCGCGACATTACCAGAGCCGATG
GCCAGCAATAAATTTGGAAGTTAAATTAATATGGCATCATGA
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Coding sequence (CDS) from alignment at chr4:1323691..1325482-

>NO04G04850.1 ID=NO04G04850.1|Name=NO04G04850.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr4:1323691..1325482- (Nannochloropsis oceanica)
ATGGCGGCCTCCGCCAGCGACAAACACTCTTCTTCTTTTTCAGGAGGCGG
AGCCATGTCTTCAACCCCGTCCCTCTCTTATGTAATCTCCCGTGGCAGCG
GTCTGACCACACGTGCACATGAGAGTGACGAGGAAGAAGATAAGAATGAG
CAGGGCCTGTTTTGTATTTCTCACTCGCGTCGGTGGTGGTGGCGGGGTAT
GCCGTCCCCTCGTCGTCTTCTGGAGGAGGAGGAGGATTCGGGAGAGGAGG
AGGATGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGCCGAG
ACGGAGCCAGAGGAGCAGGGGCAGGAGAAGATCGAGGAGCAAAACGAAAT
AGACCAGCACGGTGGCAGTAGTGACGAGGACAGCTGTGCCACTGAGCCGG
ATGAGGCGCGGATGGAGACTGGCATGTGGGGCGTTGAAGAGACGGAAACG
ATCGCGAATTTGCGTCGGCAGGGTCTTCCTATATACTTCCCATCGGGTAA
ATTTAAAGGAGTCGGCTTGCGCGCACTTAAACGTACTGTCGAAGGGCGAG
CATATATCTCCGAATACCTCGCCAAGAAACCTGGGTGGTTCCAGCGCTGC
AATGTACCTGAGAATATGGCGCTTCTCGAGTCCCTCTCCCGCCTGCGCAT
GCTCCGCCGCGTGACGGACCTTCAGGGTAAGGTCGTCCCCGCCAGCCGAA
TGCTTCGAGATTGGAAGAAACAAGTGACCCCGAAGGCATTCATTTTCAAG
CGGCAGCGACGGACGGCGTCATGA
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Synonyms
Publications