NO04G04830.1, NO04G04830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04830.1
Unique Name	NO04G04830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2627
Alignment location	chr4:1319516..1322142 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1319516..1322142 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G04830.1 vs.
Match: EWM28883.1 (hypothetical protein Naga_100095g9 [Nannochloropsis gaditana])

HSP 1 Score: 258.1 bits (658), Expect = 7.800e-65
Identity = 162/380 (42.63%), Postives = 218/380 (57.37%), Query Frame = 0

Query:   23 QRCIICLD------PQESATA------TGSTPNYQQCPIGGHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQL-CPQRWHYRELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQKR-------EDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLCLDQPGGGGAREGGRKGGREGGRSLKEQAHAHVIGVHGQLFFQEDEILRQQNIFRMRRIVEYLLEVTTTPSSVPPSVPP----SLAPDTSSSST------TTTSCTTYSREERKKGKQ--EEESKALQ----------FVAQALTKVAKECAALEMDVREIERIFYRYRQHQARGDDQEGEEG 361
            + C+ICL       P + A A      +  +  + QCPI G I+CH  CL+ LVLFNV+PERLRAYHG +PCPW++A   R+  C  RW YR+L  HLS ++Q++Y E +T F+RTLLG      R   T+  V    +K+       +DP V +AAAHI  ++L+L CP C  VF DFDACCAVTC ACG  FCGLC+  PGG   ++G      EG    KE AHAHVI VHG+LF QE+EILRQQN+FR  R+V YL+ +  +P S+PPS+PP     LAP  S+ ++        T+     R ER +G+   EE  +A +           + + L +VA+EC  + +DV EI R     + H+A     EG  G
Sbjct:   14 RHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARE--TDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNM----EGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSP-SLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRR-----KAHEALRGPNEGMAG 381

The following BLAST results are available for this feature:

BLAST of NO04G04830.1 vs.

BLAST of NO04G04830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28883.1	7.800e-65	42.63	hypothetical protein Naga_100095g9 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G04830	NO04G04830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04830.1	NO04G04830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04830.1.cds1	NO04G04830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1319516..1322142-
coding sequence from alignment at chr4:1319516..1322142-

mRNA sequence

>NO04G04830.1 ID=NO04G04830.1|Name=NO04G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2627bp
ATGGCGGAGAGGCTTTGCAACATTCAGTTCCCCAACCATCTTCTGCAGCA
GCAGGAGGAGCTGCAACAGCGATGCATAATTTGCTTGGACCCCCAGGAAA
GTGCTACTGCTACTGGATCCACCCCGAACTACCAGCAATGCCCCATCGGT
GGTCATATTGTCTGCCACAAAACATGCCTGGACTCCCTGGTGTTGTTTAA
TGTCTCACCTGAGCGCTTGCGGGCCTATCATGGTGAGATTCCTTGCCCCT
GGGTGAACGCGGAGCAAGGGAGGCAGCTGTGCCCCCAGCGTTGGCATTAT
CGAGAGTTGGCAACGCATTTGTCACCAGACGTGCAGCTCCGGTACGTGGA
GGGGGTCACGACGTTCATGCGCACCTTGCTTGGAGAAAAATATTATCCGA
ATCGCCATCATCTCACCGAAGAAGCGGTGCAGTGGCAACACCAGAAAAGA
GAAGATCCGCTTGTGGAAGCCGCAGCAGCACACATCGTGAGCGACCTACT
CAGCCTCCATTGTCCTTCATGCGCGACTGTCTTTGCCGACTTTGATGCTT
GCTGTGCAGTCACATGTGGGGCGTGCGGAACACATTTCTGCGGTCTCTGT
CTGGACCAACCGGGGGGGGGGGGCGCGAGGGAGGGAGGGCGCAAGGGAGG
GAGGGAGGGAGGGAGAAGCTTGAAGGAGCAGGCGCACGCGCATGTCATTG
GTGTACATGGGCAATTATTCTTCCAAGAGGATGAGATCTTGAGGCAACAG
AATATTTTTCGGATGAGGCGGATCGTGGAATATTTGCTGGAGGTCACCAC
AACCCCTTCCTCCGTCCCTCCCTCCGTTCCTCCATCTCTCGCTCCTGATA
CCAGCAGCAGCAGCACCACCACCACCAGCTGCACAACTTACTCTCGAGAA
GAAAGAAAAAAAGGGAAGCAAGAAGAGGAGAGTAAGGCCCTACAGTTTGT
GGCACAGGCCTTGACAAAGGTCGCTAAGGAGTGTGCGGCCTTGGAGATGG
ACGTACGAGAGATTGAGAGGATCTTTTATCGATATCGCCAACACCAGGCA
AGGGGAGATGACCAGGAGGGGGAGGAAGGGATGATAGTATTTAGGCCTCG
GCGTCCAAGTCGTCTGCGATTTGAGGATCTTATGGGGGAGGGAGAGAGGG
AGGGAAGGCTTGTCTTCCGGGAGGCAACACCCATTTTACGGTTGGCAGGT
GGGGAGAAGATGAATGTTACTGTTGTTGCTCCTGCTGCTACTGCTGTAAC
CTTATCTAGTGCAGCTGTCCTTCTTGCTGCTACTACTGCTGATGGTAGCG
CGCCAGCGGGCCCTGCTGCTGCTGCTGCTGCTACTGCTTGTACTTCTTCT
ACTGTGATGGCCCTTATCTCAGCATCGGCGGCTGCTGCTGCTGGCTTTTC
AGGGCCTGCAGGACATAGTTATGCAGTAGAGGGGGAAGGGATGAGGGAGG
GAGGAAAGGAGGAAGGGAAGGGCATGGATGAGGTGAACAGAAGGACGGAC
GAAGGGGAAGAGGAGGAGGAGGAGGAGCATGGGCATCGCCATCGTCGTCG
GCGGACGTTCAGCTTCCAATCCGAATGCCCGGATTCGATCTCTACGAATG
GTTGGAGTGCTTTCTCCTCCTTCTCTTCCTCCCTTTCTTCCTCGCCCTTG
TCTTCGCCTCTGCCACATTCTCTTTGGCCTGAGCGAGTCATGGAGGATGT
GGAGGAGGAGAAGGAAGAGATAATGGACGAGGAGGAAAATAAAGAGGCGA
AAGAGCAGCAGATCGTCGAAGGCGAGGATGAGAAGTATGAGGATGACGAG
GACGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGTCTTACTTCTATGA
GGAAGAGGGCGGCATCTCTCTGATGCAACACAGGGTAGGAAGAGGGAGGG
AGATAGAGAAGGGGGAAGACTTGAGCTTCTCTGTGTCTAAACAAGAGGAA
GGGATGGATGTAGTGGTTAGAACCAGTGAGGAAAAGGAGGAAGAGACAGA
GAGTAAGGGCGTGGCGGCGAATTATTTCACTTTTTGAGCCTCTCTTGCCA
ATTGGCCGACGGCGCCATCGACAGCCGAATGCGGAAGAGAGAGAGGCATA
GAGGAAGAGATAGAGGATGTATACATATATACACATATGTATATTTTCAT
CTGCCAGAATTCTGTCCTTGACGTGGACAAACTTTTGTTAAGGGAAGAGT
GAGTGCACGACAGACGAATGATTGCACTTTCCCACGACGGAACCAACTTC
ATATCGGAAGATATAATTAACCGAATATTTAGTGGAGAGACGATTTTCTG
AAGAAGGAAACAGGCTATATGGAGGGGAGTAAAGCGAATGATATGTCAGG
TAAAGTTAAGCGAGTAAATGGTGGTCGGAGCGCAAGGCTTGAGTGGAGTA
TAAGAGGATTAAGAAAAATATAAGTGCTAGCTAGAGGAGCGAAAAGCGAA
CATGAAAATTAATTATGATAGCGAGTGAGAGGTGGTTGGAGCGTAGATCT
TAAAAAGAGTGTAGGAGGTGAAATAGTGGCCCAAGCTAGATGGATAAAAT
GCAGACATAATCATAGATAGTGGAGGAAGTAGGTCGAGTACAGACACGCC
TCACAAAGAAAAAAGAGTAGATATACA

protein sequence of NO04G04830.1

>NO04G04830.1-protein ID=NO04G04830.1-protein|Name=NO04G04830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=679bp
MAERLCNIQFPNHLLQQQEELQQRCIICLDPQESATATGSTPNYQQCPIG
GHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQLCPQRWHY
RELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQKR
EDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLC
LDQPGGGGAREGGRKGGREGGRSLKEQAHAHVIGVHGQLFFQEDEILRQQ
NIFRMRRIVEYLLEVTTTPSSVPPSVPPSLAPDTSSSSTTTTSCTTYSRE
ERKKGKQEEESKALQFVAQALTKVAKECAALEMDVREIERIFYRYRQHQA
RGDDQEGEEGMIVFRPRRPSRLRFEDLMGEGEREGRLVFREATPILRLAG
GEKMNVTVVAPAATAVTLSSAAVLLAATTADGSAPAGPAAAAAATACTSS
TVMALISASAAAAAGFSGPAGHSYAVEGEGMREGGKEEGKGMDEVNRRTD
EGEEEEEEEHGHRHRRRRTFSFQSECPDSISTNGWSAFSSFSSSLSSSPL
SSPLPHSLWPERVMEDVEEEKEEIMDEEENKEAKEQQIVEGEDEKYEDDE
DEEEEEEEKEEESYFYEEEGGISLMQHRVGRGREIEKGEDLSFSVSKQEE
GMDVVVRTSEEKEEETESKGVAANYFTF*

mRNA from alignment at chr4:1319516..1322142-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G04830.1 ID=NO04G04830.1|Name=NO04G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2627bp|location=Sequence derived from alignment at chr4:1319516..1322142- (Nannochloropsis oceanica)
ATGGCGGAGAGGCTTTGCAACATTCAGTTCCCCAACCATCTTCTGCAGCA
GCAGGAGGAGCTGCAACAGCGATGCATAATTTGCTTGGACCCCCAGGAAA
GTGCTACTGCTACTGGATCCACCCCGAACTACCAGCAATGCCCCATCGGT
GGTCATATTGTCTGCCACAAAACATGCCTGGACTCCCTGGTGTTGTTTAA
TGTCTCACCTGAGCGCTTGCGGGCCTATCATGGTGAGATTCCTTGCCCCT
GGGTGAACGCGGAGCAAGGGAGGCAGCTGTGCCCCCAGCGTTGGCATTAT
CGAGAGTTGGCAACGCATTTGTCACCAGACGTGCAGCTCCGGTACGTGGA
GGGGGTCACGACGTTCATGCGCACCTTGCTTGGAGAAAAATATTATCCGA
ATCGCCATCATCTCACCGAAGAAGCGGTGCAGTGGCAACACCAGAAAAGA
GAAGATCCGCTTGTGGAAGCCGCAGCAGCACACATCGTGAGCGACCTACT
CAGCCTCCATTGTCCTTCATGCGCGACTGTCTTTGCCGACTTTGATGCTT
GCTGTGCAGTCACATGTGGGGCGTGCGGAACACATTTCTGCGGTCTCTGT
CTGGACCAACCGGGGGGGGGGGGCGCGAGGGAGGGAGGGCGCAAGGGAGG
GAGGGAGGGAGGGAGAAGCTTGAAGGAGCAGGCGCACGCGCATGTCATTG
GTGTACATGGGCAATTATTCTTCCAAGAGGATGAGATCTTGAGGCAACAG
AATATTTTTCGGATGAGGCGGATCGTGGAATATTTGCTGGAGGTCACCAC
AACCCCTTCCTCCGTCCCTCCCTCCGTTCCTCCATCTCTCGCTCCTGATA
CCAGCAGCAGCAGCACCACCACCACCAGCTGCACAACTTACTCTCGAGAA
GAAAGAAAAAAAGGGAAGCAAGAAGAGGAGAGTAAGGCCCTACAGTTTGT
GGCACAGGCCTTGACAAAGGTCGCTAAGGAGTGTGCGGCCTTGGAGATGG
ACGTACGAGAGATTGAGAGGATCTTTTATCGATATCGCCAACACCAGGCA
AGGGGAGATGACCAGGAGGGGGAGGAAGGGATGATAGTATTTAGGCCTCG
GCGTCCAAGTCGTCTGCGATTTGAGGATCTTATGGGGGAGGGAGAGAGGG
AGGGAAGGCTTGTCTTCCGGGAGGCAACACCCATTTTACGGTTGGCAGGT
GGGGAGAAGATGAATGTTACTGTTGTTGCTCCTGCTGCTACTGCTGTAAC
CTTATCTAGTGCAGCTGTCCTTCTTGCTGCTACTACTGCTGATGGTAGCG
CGCCAGCGGGCCCTGCTGCTGCTGCTGCTGCTACTGCTTGTACTTCTTCT
ACTGTGATGGCCCTTATCTCAGCATCGGCGGCTGCTGCTGCTGGCTTTTC
AGGGCCTGCAGGACATAGTTATGCAGTAGAGGGGGAAGGGATGAGGGAGG
GAGGAAAGGAGGAAGGGAAGGGCATGGATGAGGTGAACAGAAGGACGGAC
GAAGGGGAAGAGGAGGAGGAGGAGGAGCATGGGCATCGCCATCGTCGTCG
GCGGACGTTCAGCTTCCAATCCGAATGCCCGGATTCGATCTCTACGAATG
GTTGGAGTGCTTTCTCCTCCTTCTCTTCCTCCCTTTCTTCCTCGCCCTTG
TCTTCGCCTCTGCCACATTCTCTTTGGCCTGAGCGAGTCATGGAGGATGT
GGAGGAGGAGAAGGAAGAGATAATGGACGAGGAGGAAAATAAAGAGGCGA
AAGAGCAGCAGATCGTCGAAGGCGAGGATGAGAAGTATGAGGATGACGAG
GACGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGTCTTACTTCTATGA
GGAAGAGGGCGGCATCTCTCTGATGCAACACAGGGTAGGAAGAGGGAGGG
AGATAGAGAAGGGGGAAGACTTGAGCTTCTCTGTGTCTAAACAAGAGGAA
GGGATGGATGTAGTGGTTAGAACCAGTGAGGAAAAGGAGGAAGAGACAGA
GAGTAAGGGCGTGGCGGCGAATTATTTCACTTTTTGAGCCTCTCTTGCCA
ATTGGCCGACGGCGCCATCGACAGCCGAATGCGGAAGAGAGAGAGGCATA
GAGGAAGAGATAGAGGATGTATACATATATACACATATGTATATTTTCAT
CTGCCAGAATTCTGTCCTTGACGTGGACAAACTTTTGTTAAGGGAAGAGT
GAGTGCACGACAGACGAATGATTGCACTTTCCCACGACGGAACCAACTTC
ATATCGGAAGATATAATTAACCGAATATTTAGTGGAGAGACGATTTTCTG
AAGAAGGAAACAGGCTATATGGAGGGGAGTAAAGCGAATGATATGTCAGG
TAAAGTTAAGCGAGTAAATGGTGGTCGGAGCGCAAGGCTTGAGTGGAGTA
TAAGAGGATTAAGAAAAATATAAGTGCTAGCTAGAGGAGCGAAAAGCGAA
CATGAAAATTAATTATGATAGCGAGTGAGAGGTGGTTGGAGCGTAGATCT
TAAAAAGAGTGTAGGAGGTGAAATAGTGGCCCAAGCTAGATGGATAAAAT
GCAGACATAATCATAGATAGTGGAGGAAGTAGGTCGAGTACAGACACGCC
TCACAAAGAAAAAAGAGTAGATATACA

Coding sequence (CDS) from alignment at chr4:1319516..1322142-

>NO04G04830.1 ID=NO04G04830.1|Name=NO04G04830.1|organism=Nannochloropsis oceanica|type=CDS|length=2037bp|location=Sequence derived from alignment at chr4:1319516..1322142- (Nannochloropsis oceanica)
ATGGCGGAGAGGCTTTGCAACATTCAGTTCCCCAACCATCTTCTGCAGCA
GCAGGAGGAGCTGCAACAGCGATGCATAATTTGCTTGGACCCCCAGGAAA
GTGCTACTGCTACTGGATCCACCCCGAACTACCAGCAATGCCCCATCGGT
GGTCATATTGTCTGCCACAAAACATGCCTGGACTCCCTGGTGTTGTTTAA
TGTCTCACCTGAGCGCTTGCGGGCCTATCATGGTGAGATTCCTTGCCCCT
GGGTGAACGCGGAGCAAGGGAGGCAGCTGTGCCCCCAGCGTTGGCATTAT
CGAGAGTTGGCAACGCATTTGTCACCAGACGTGCAGCTCCGGTACGTGGA
GGGGGTCACGACGTTCATGCGCACCTTGCTTGGAGAAAAATATTATCCGA
ATCGCCATCATCTCACCGAAGAAGCGGTGCAGTGGCAACACCAGAAAAGA
GAAGATCCGCTTGTGGAAGCCGCAGCAGCACACATCGTGAGCGACCTACT
CAGCCTCCATTGTCCTTCATGCGCGACTGTCTTTGCCGACTTTGATGCTT
GCTGTGCAGTCACATGTGGGGCGTGCGGAACACATTTCTGCGGTCTCTGT
CTGGACCAACCGGGGGGGGGGGGCGCGAGGGAGGGAGGGCGCAAGGGAGG
GAGGGAGGGAGGGAGAAGCTTGAAGGAGCAGGCGCACGCGCATGTCATTG
GTGTACATGGGCAATTATTCTTCCAAGAGGATGAGATCTTGAGGCAACAG
AATATTTTTCGGATGAGGCGGATCGTGGAATATTTGCTGGAGGTCACCAC
AACCCCTTCCTCCGTCCCTCCCTCCGTTCCTCCATCTCTCGCTCCTGATA
CCAGCAGCAGCAGCACCACCACCACCAGCTGCACAACTTACTCTCGAGAA
GAAAGAAAAAAAGGGAAGCAAGAAGAGGAGAGTAAGGCCCTACAGTTTGT
GGCACAGGCCTTGACAAAGGTCGCTAAGGAGTGTGCGGCCTTGGAGATGG
ACGTACGAGAGATTGAGAGGATCTTTTATCGATATCGCCAACACCAGGCA
AGGGGAGATGACCAGGAGGGGGAGGAAGGGATGATAGTATTTAGGCCTCG
GCGTCCAAGTCGTCTGCGATTTGAGGATCTTATGGGGGAGGGAGAGAGGG
AGGGAAGGCTTGTCTTCCGGGAGGCAACACCCATTTTACGGTTGGCAGGT
GGGGAGAAGATGAATGTTACTGTTGTTGCTCCTGCTGCTACTGCTGTAAC
CTTATCTAGTGCAGCTGTCCTTCTTGCTGCTACTACTGCTGATGGTAGCG
CGCCAGCGGGCCCTGCTGCTGCTGCTGCTGCTACTGCTTGTACTTCTTCT
ACTGTGATGGCCCTTATCTCAGCATCGGCGGCTGCTGCTGCTGGCTTTTC
AGGGCCTGCAGGACATAGTTATGCAGTAGAGGGGGAAGGGATGAGGGAGG
GAGGAAAGGAGGAAGGGAAGGGCATGGATGAGGTGAACAGAAGGACGGAC
GAAGGGGAAGAGGAGGAGGAGGAGGAGCATGGGCATCGCCATCGTCGTCG
GCGGACGTTCAGCTTCCAATCCGAATGCCCGGATTCGATCTCTACGAATG
GTTGGAGTGCTTTCTCCTCCTTCTCTTCCTCCCTTTCTTCCTCGCCCTTG
TCTTCGCCTCTGCCACATTCTCTTTGGCCTGAGCGAGTCATGGAGGATGT
GGAGGAGGAGAAGGAAGAGATAATGGACGAGGAGGAAAATAAAGAGGCGA
AAGAGCAGCAGATCGTCGAAGGCGAGGATGAGAAGTATGAGGATGACGAG
GACGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGTCTTACTTCTATGA
GGAAGAGGGCGGCATCTCTCTGATGCAACACAGGGTAGGAAGAGGGAGGG
AGATAGAGAAGGGGGAAGACTTGAGCTTCTCTGTGTCTAAACAAGAGGAA
GGGATGGATGTAGTGGTTAGAACCAGTGAGGAAAAGGAGGAAGAGACAGA
GAGTAAGGGCGTGGCGGCGAATTATTTCACTTTTTGA

Synonyms

Publications