NO04G04820.1, NO04G04820.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04820.1
Unique Name	NO04G04820.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1914
Alignment location	chr4:1316599..1319123 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1316599..1319123 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G04820.1 vs.
Match: EWM28880.1 (2-isopropylmalate synthase [Nannochloropsis gaditana])

HSP 1 Score: 950.3 bits (2455), Expect = 3.100e-273
Identity = 499/640 (77.97%), Postives = 542/640 (84.69%), Query Frame = 0

Query:    2 SSDDENAVHTALVPTDATA----TAAAAAALLPTSGEARRSLEELEADDPEYRETHTHPRPGHDHEKPPKSGIFSFLYAVEGGDPDGEVDVVHELEDEVG--EMGPGGHRVGAPCFSFRTLMSYTGPGFLMCIAYLDPGNLEADLQVGAYTGYDLLWMLALATFMGFALQCMAARLGVVTGKNLARVCKEHYSHAISMVLWVLIELAIIGNDLQEIIGSAIAFQILFGFPLWLGCLVTFIDTFTFLAIHYFGIRKLEGLFVVLVAIMTVCFFINFGKQPPPPGLIAEGFVPQIKPFAVLSAVGLIGAVIMPHNIYLHSALVLSRKVNRRKPAHVIEANKYFAIDSGIALLVSFVINLAVVSVFAYHFFDDGCANIVGGPLACLSRDAEGACICSTIGLAGAHDALADALGKSAKYIWGVGLLAAGQASTMTGTYAGQYVMEGFLDLKIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDMFQEAINVFNSVLLSFALLPVLHFTSSSAIMGEHVSGLPLTVTIWSLAFMVLAINIYLVVLRIGGGQPWWMYVLTAIGGIIYLRFSYALVADDVVKGYWGVVEMMPEGWEVRRRLLERRKAREVEGGKEG--GGKGVIIVASGHHRLDNPLIESVSDGEG 634
            S D+E+AVHTALVP  +      +A AA+   P+S EA RSL+ELEADD EY +THTHPRPGHDHEKPP +GI SFLYA EGGDPD EVDVVH  ++E G  E  P       P FSFRTL+SYTGPGFLMCIAYLDPGNLEADLQVGAYTGYDLLWMLALATFMGFALQCMA RLGVVTGKNLARVCKE Y+ A SM LW+LIELAI+G DLQEI+GSAIAFQILFGFPLWLGCL+TFIDTFTFL IHYFG+RKLE +FV+LVAIMTVCFFINFGK PPP   IAEGFVPQI+P+AVLSAVGLIGAVIMPHNIYLHSALVLSRKV+RR+PAHV EANKYFAIDS IAL VSFVINLAVVSVFAYHFFD GCA   GGPLACLSR  EG C C  IGLAGAHDALA+ALGKSAKYIW VGLLAAGQASTMTGTYAGQYVMEGFLDL+IPLWARVTFTRFVAIGPGLVVAILTENNQNLSD FQEAINVFNSVLLSF+LLPVLHFTSSS IMGEHVS LPLT+TIW LAF VLAINIYLVVLRIG GQPWW+YV+TA+ G+IYL FSY+LV +D+  G W VVE +P GW ++RRLL  R+ R+V   KEG  GG G+  V+  H R    LIESV D +G
Sbjct:  785 SIDEEHAVHTALVPPTSAEVSIPSAGAASTAHPSSTEAMRSLQELEADDTEYSQTHTHPRPGHDHEKPPTAGILSFLYAFEGGDPDSEVDVVHAFQEEGGVPERKP-------PVFSFRTLLSYTGPGFLMCIAYLDPGNLEADLQVGAYTGYDLLWMLALATFMGFALQCMAVRLGVVTGKNLARVCKEQYNRATSMTLWILIELAIVGCDLQEIVGSAIAFQILFGFPLWLGCLITFIDTFTFLGIHYFGVRKLESVFVLLVAIMTVCFFINFGKSPPPSRDIAEGFVPQIRPYAVLSAVGLIGAVIMPHNIYLHSALVLSRKVDRRRPAHVKEANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAPGGPLACLSRTEEGVCDCQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQASTMTGTYAGQYVMEGFLDLQIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDRFQEAINVFNSVLLSFSLLPVLHFTSSSVIMGEHVSSLPLTITIWVLAFGVLAINIYLVVLRIGAGQPWWVYVVTAVVGLIYLAFSYSLVQEDIENGAWAVVEGLPVGWPLKRRLLAWRERRKVR--KEGLIGGDGISNVSPKHQR----LIESVGDSDG 1411

The following BLAST results are available for this feature:

BLAST of NO04G04820.1 vs.

BLAST of NO04G04820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28880.1	3.100e-273	77.97	2-isopropylmalate synthase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G04820	NO04G04820	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04820.1	NO04G04820.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04820.1.cds1	NO04G04820.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04820.1.cds2	NO04G04820.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04820.1.cds3	NO04G04820.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04820.1.cds4	NO04G04820.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1316599..1319123+
coding sequence from alignment at chr4:1316599..1319123+

mRNA sequence

>NO04G04820.1 ID=NO04G04820.1|Name=NO04G04820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ATGTCGAGCGACGATGAGAATGCGGTGCACACGGCCCTTGTCCCCACGGA
TGCCACTGCTACTGCTGCTGCTGCAGCTGCGCTCCTTCCTACTTCAGGTG
AAGCCCGCCGGTCCTTAGAGGAGCTGGAGGCAGACGACCCCGAATACAGA
GAGACGCACACGCACCCACGGCCAGGGCATGACCACGAGAAGCCGCCGAA
ATCAGGGATATTCTCCTTTTTGTACGCTGTCGAGGGTGGTGACCCGGATG
GAGAAGTGGATGTAGTGCATGAATTGGAGGATGAAGTCGGGGAGATGGGA
CCAGGGGGACACCGAGTGGGGGCACCATGCTTTAGTTTTCGGACGCTCAT
GTCGTATACGGGGCCCGGGTTCTTGATGTGCATTGCTTACTTGGATCCGG
GCAATTTGGAGGCGGATTTGCAGGTTGGCGCGTACACGGGCTACGACCTG
CTATGGATGTTGGCCCTGGCCACGTTTATGGGCTTTGCTCTTCAATGCAT
GGCAGCACGCCTAGGGGTGGTGACAGGCAAGAATCTTGCGCGAGTCTGCA
AGGAGCACTACAGCCACGCCATTTCCATGGTCCTGTGGGTTCTTATCGAA
CTGGCCATCATTGGCAATGACCTCCAAGAAATCATTGGGTCGGCCATCGC
CTTTCAGATCCTCTTCGGCTTCCCCCTGTGGCTTGGGTGCTTGGTGACCT
TCATCGACACCTTCACCTTCCTCGCGATCCACTACTTCGGCATTCGGAAG
CTCGAAGGGCTCTTCGTCGTGCTGGTGGCCATCATGACGGTGTGCTTTTT
TATTAATTTTGGGAAACAACCACCACCGCCGGGACTGATCGCCGAAGGTT
TTGTGCCCCAAATCAAACCGTTTGCCGTCTTGTCGGCAGTCGGGCTGATT
GGCGCGGTGATCATGCCTCACAACATCTACCTGCACTCGGCCCTTGTCCT
CTCTCGGAAAGTGAACCGCCGCAAGCCCGCGCACGTCATTGAAGCCAACA
AGTACTTCGCGATCGACTCGGGCATTGCCTTGTTGGTGTCTTTTGTGATC
AACCTGGCCGTGGTCTCCGTCTTCGCCTACCATTTTTTCGACGACGGGTG
CGCCAACATAGTGGGGGGTCCACTGGCTTGCCTCTCCCGGGACGCGGAAG
GTGCATGTATATGCAGCACCATCGGCCTCGCTGGAGCTCATGATGCCCTG
GCTGACGCTCTGGGAAAAAGCGCGAAGTACATCTGGGGGGTCGGGTTGTT
GGCAGCAGGACAAGCGAGCACCATGACGGGGACGTATGCCGGACAGTATG
TAATGGAAGGTTTCCTCGACCTAAAGATTCCCTTGTGGGCGCGTGTGACC
TTCACACGATTCGTGGCCATTGGGCCGGGGCTGGTCGTTGCGATTCTGAC
GGAGAACAACCAAAATTTGAGTGACATGTTCCAAGAAGCCATCAATGTCT
TCAATTCGGTGTTGCTGTCGTTTGCGCTCTTGCCCGTGCTGCATTTCACG
TCCTCTTCGGCAATTATGGGGGAGCACGTGTCAGGCCTGCCTTTAACAGT
GACCATCTGGTCGTTGGCTTTCATGGTCTTGGCAATAAATATCTATCTGG
TGGTGCTGCGGATAGGGGGGGGGCAACCGTGGTGGATGTATGTCCTGACA
GCGATCGGAGGGATCATTTATTTGAGGTTCTCGTATGCATTGGTGGCTGA
TGATGTGGTGAAGGGCTATTGGGGTGTGGTGGAAATGATGCCTGAAGGGT
GGGAGGTGCGGCGACGGCTGTTGGAGAGGAGAAAGGCGAGGGAGGTGGAG
GGAGGGAAGGAAGGAGGGGGGAAAGGGGTGATCATAGTGGCGTCAGGGCA
CCATAGGCTGGATAACCCGTTGATTGAGAGTGTGAGTGATGGGGAAGGCG
AGGCGTCGACGTAG

protein sequence of NO04G04820.1

>NO04G04820.1-protein ID=NO04G04820.1-protein|Name=NO04G04820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MSSDDENAVHTALVPTDATATAAAAAALLPTSGEARRSLEELEADDPEYR
ETHTHPRPGHDHEKPPKSGIFSFLYAVEGGDPDGEVDVVHELEDEVGEMG
PGGHRVGAPCFSFRTLMSYTGPGFLMCIAYLDPGNLEADLQVGAYTGYDL
LWMLALATFMGFALQCMAARLGVVTGKNLARVCKEHYSHAISMVLWVLIE
LAIIGNDLQEIIGSAIAFQILFGFPLWLGCLVTFIDTFTFLAIHYFGIRK
LEGLFVVLVAIMTVCFFINFGKQPPPPGLIAEGFVPQIKPFAVLSAVGLI
GAVIMPHNIYLHSALVLSRKVNRRKPAHVIEANKYFAIDSGIALLVSFVI
NLAVVSVFAYHFFDDGCANIVGGPLACLSRDAEGACICSTIGLAGAHDAL
ADALGKSAKYIWGVGLLAAGQASTMTGTYAGQYVMEGFLDLKIPLWARVT
FTRFVAIGPGLVVAILTENNQNLSDMFQEAINVFNSVLLSFALLPVLHFT
SSSAIMGEHVSGLPLTVTIWSLAFMVLAINIYLVVLRIGGGQPWWMYVLT
AIGGIIYLRFSYALVADDVVKGYWGVVEMMPEGWEVRRRLLERRKAREVE
GGKEGGGKGVIIVASGHHRLDNPLIESVSDGEGEAST*

mRNA from alignment at chr4:1316599..1319123+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G04820.1 ID=NO04G04820.1|Name=NO04G04820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2525bp|location=Sequence derived from alignment at chr4:1316599..1319123+ (Nannochloropsis oceanica)
ATGTCGAGCGACGATGAGAATGCGGTGCACACGGCCCTTGTCCCCACGGA
TGCCACTGCTACTGCTGCTGCTGCAGCTGCGCTCCTTCCTACTTCAGGTG
AAGCCCGCCGGTCCTTAGAGGAGCTGGAGGCAGACGACCCCGAATACAGA
GAGACGCACACGCACCCACGGCCAGGGCATGACCACGAGAAGCCGCCGAA
ATCAGGGATATTCTCCTTTTTGTACGCTGTCGAGGGTGGTGACCCGGATG
GAGAAGTGGATGTAGTGCATGAATTGGAGGATGAAGTCGGGGAGATGGGA
CCAGGGGGACACCGAGTGGGGGCACCATGCTTTAGTTTTCGGACGCTCAT
GTCGTATACGGGGCCCGGGTTCTTGATGTGCATTGCTTACTTGGATCCGG
GCAATTTGGAGGCGGATTTGCAGGTTGGCGCGTACACGGGTACGTATGCT
GGAAAGGGGCGGAGAGGAGGAGGAGGAGGAGCATGAGGACGAGGAGGAGG
GAGGAGTGGGAGGGCTGTGCTTCTTTTTCCTACTTTGTTTTGCGGCCTTT
TAGCCCTATTATTGCCTCAAGACAACTTCCCCCTCTCCTCACGTCTTCAC
TTCCTTCCTCCCTCCCTTCTTCTTTTCCTCACCTTACCTGCAGGCTACGA
CCTGCTATGGATGTTGGCCCTGGCCACGTTTATGGGCTTTGCTCTTCAAT
GCATGGCAGCACGCCTAGGGGTGGTGACAGGCAAGAATCTTGCGCGAGTC
TGCAAGGTACGTGTTAGTGGACTTTCCGGCATTTCTGATTAATGTGGAGT
GGTGCTGGTAGATGCTCTCCTGCGACATTTCGTTTATGCCCTCTTCTTCC
TCCTTCCCTTCGCCACTTGGTTGTAGGGTATTAGATTCTGCAAAGACTCC
GTTTAAGCCCACCCCTCACCCTCCTTCCCTCCTTCCCTCTCTCTCCCTCC
TTCCCAGGAGCACTACAGCCACGCCATTTCCATGGTCCTGTGGGTTCTTA
TCGAACTGGCCATCATTGGCAATGACCTCCAAGAAATCATTGGGTCGGCC
ATCGCCTTTCAGATCCTCTTCGGCTTCCCCCTGTGGCTTGGGTGCTTGGT
GACCTTCATCGACACCTTCACCTTCCTCGCGATCCACTACTTCGGCATTC
GGAAGCTCGAAGGGCTCTTCGTCGTGCTGGTGGCCATCATGACGGTGTGC
TTTTTTATTAATTTTGGGAAACAACCACCACCGCCGGGACTGATCGCCGA
AGGTTTTGTGCCCCAAATCAAACCGTTTGCCGTCTTGTCGGCAGTCGGGC
TGATTGGTAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATCCGGCCA
TGGTTCTGATTCACTATTGTCTACCTGCCTTGGGCCCTCGTCCTCTCCCA
GAAGGCTTGGCCATTGCAAGCCTGCGGATGGCAAGACAATCGGCAAAGTA
AACTCCCCCCACCCTCTCACCCTCCCTCCCTCTCACCCTTCCTCCCTCCC
TTTCTTCCCCAGGCGCGGTGATCATGCCTCACAACATCTACCTGCACTCG
GCCCTTGTCCTCTCTCGGAAAGTGAACCGCCGCAAGCCCGCGCACGTCAT
TGAAGCCAACAAGTACTTCGCGATCGACTCGGGCATTGCCTTGTTGGTGT
CTTTTGTGATCAACCTGGCCGTGGTCTCCGTCTTCGCCTACCATTTTTTC
GACGACGGGTGCGCCAACATAGTGGGGGGTCCACTGGCTTGCCTCTCCCG
GGACGCGGAAGGTGCATGTATATGCAGCACCATCGGCCTCGCTGGAGCTC
ATGATGCCCTGGCTGACGCTCTGGGAAAAAGCGCGAAGTACATCTGGGGG
GTCGGGTTGTTGGCAGCAGGACAAGCGAGCACCATGACGGGGACGTATGC
CGGACAGTATGTAATGGAAGGTTTCCTCGACCTAAAGATTCCCTTGTGGG
CGCGTGTGACCTTCACACGATTCGTGGCCATTGGGCCGGGGCTGGTCGTT
GCGATTCTGACGGAGAACAACCAAAATTTGAGTGACATGTTCCAAGAAGC
CATCAATGTCTTCAATTCGGTGTTGCTGTCGTTTGCGCTCTTGCCCGTGC
TGCATTTCACGTCCTCTTCGGCAATTATGGGGGAGCACGTGTCAGGCCTG
CCTTTAACAGTGACCATCTGGTCGTTGGCTTTCATGGTCTTGGCAATAAA
TATCTATCTGGTGGTGCTGCGGATAGGGGGGGGGCAACCGTGGTGGATGT
ATGTCCTGACAGCGATCGGAGGGATCATTTATTTGAGGTTCTCGTATGCA
TTGGTGGCTGATGATGTGGTGAAGGGCTATTGGGGTGTGGTGGAAATGAT
GCCTGAAGGGTGGGAGGTGCGGCGACGGCTGTTGGAGAGGAGAAAGGCGA
GGGAGGTGGAGGGAGGGAAGGAAGGAGGGGGGAAAGGGGTGATCATAGTG
GCGTCAGGGCACCATAGGCTGGATAACCCGTTGATTGAGAGTGTGAGTGA
TGGGGAAGGCGAGGCGTCGACGTAG

Coding sequence (CDS) from alignment at chr4:1316599..1319123+

>NO04G04820.1 ID=NO04G04820.1|Name=NO04G04820.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr4:1316599..1319123+ (Nannochloropsis oceanica)
ATGTCGAGCGACGATGAGAATGCGGTGCACACGGCCCTTGTCCCCACGGA
TGCCACTGCTACTGCTGCTGCTGCAGCTGCGCTCCTTCCTACTTCAGGTG
AAGCCCGCCGGTCCTTAGAGGAGCTGGAGGCAGACGACCCCGAATACAGA
GAGACGCACACGCACCCACGGCCAGGGCATGACCACGAGAAGCCGCCGAA
ATCAGGGATATTCTCCTTTTTGTACGCTGTCGAGGGTGGTGACCCGGATG
GAGAAGTGGATGTAGTGCATGAATTGGAGGATGAAGTCGGGGAGATGGGA
CCAGGGGGACACCGAGTGGGGGCACCATGCTTTAGTTTTCGGACGCTCAT
GTCGTATACGGGGCCCGGGTTCTTGATGTGCATTGCTTACTTGGATCCGG
GCAATTTGGAGGCGGATTTGCAGGTTGGCGCGTACACGGGCTACGACCTG
CTATGGATGTTGGCCCTGGCCACGTTTATGGGCTTTGCTCTTCAATGCAT
GGCAGCACGCCTAGGGGTGGTGACAGGCAAGAATCTTGCGCGAGTCTGCA
AGGAGCACTACAGCCACGCCATTTCCATGGTCCTGTGGGTTCTTATCGAA
CTGGCCATCATTGGCAATGACCTCCAAGAAATCATTGGGTCGGCCATCGC
CTTTCAGATCCTCTTCGGCTTCCCCCTGTGGCTTGGGTGCTTGGTGACCT
TCATCGACACCTTCACCTTCCTCGCGATCCACTACTTCGGCATTCGGAAG
CTCGAAGGGCTCTTCGTCGTGCTGGTGGCCATCATGACGGTGTGCTTTTT
TATTAATTTTGGGAAACAACCACCACCGCCGGGACTGATCGCCGAAGGTT
TTGTGCCCCAAATCAAACCGTTTGCCGTCTTGTCGGCAGTCGGGCTGATT
GGCGCGGTGATCATGCCTCACAACATCTACCTGCACTCGGCCCTTGTCCT
CTCTCGGAAAGTGAACCGCCGCAAGCCCGCGCACGTCATTGAAGCCAACA
AGTACTTCGCGATCGACTCGGGCATTGCCTTGTTGGTGTCTTTTGTGATC
AACCTGGCCGTGGTCTCCGTCTTCGCCTACCATTTTTTCGACGACGGGTG
CGCCAACATAGTGGGGGGTCCACTGGCTTGCCTCTCCCGGGACGCGGAAG
GTGCATGTATATGCAGCACCATCGGCCTCGCTGGAGCTCATGATGCCCTG
GCTGACGCTCTGGGAAAAAGCGCGAAGTACATCTGGGGGGTCGGGTTGTT
GGCAGCAGGACAAGCGAGCACCATGACGGGGACGTATGCCGGACAGTATG
TAATGGAAGGTTTCCTCGACCTAAAGATTCCCTTGTGGGCGCGTGTGACC
TTCACACGATTCGTGGCCATTGGGCCGGGGCTGGTCGTTGCGATTCTGAC
GGAGAACAACCAAAATTTGAGTGACATGTTCCAAGAAGCCATCAATGTCT
TCAATTCGGTGTTGCTGTCGTTTGCGCTCTTGCCCGTGCTGCATTTCACG
TCCTCTTCGGCAATTATGGGGGAGCACGTGTCAGGCCTGCCTTTAACAGT
GACCATCTGGTCGTTGGCTTTCATGGTCTTGGCAATAAATATCTATCTGG
TGGTGCTGCGGATAGGGGGGGGGCAACCGTGGTGGATGTATGTCCTGACA
GCGATCGGAGGGATCATTTATTTGAGGTTCTCGTATGCATTGGTGGCTGA
TGATGTGGTGAAGGGCTATTGGGGTGTGGTGGAAATGATGCCTGAAGGGT
GGGAGGTGCGGCGACGGCTGTTGGAGAGGAGAAAGGCGAGGGAGGTGGAG
GGAGGGAAGGAAGGAGGGGGGAAAGGGGTGATCATAGTGGCGTCAGGGCA
CCATAGGCTGGATAACCCGTTGATTGAGAGTGTGAGTGATGGGGAAGGCG
AGGCGTCGACGTAG

Synonyms

Publications