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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1311978..1315726 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04810.1 vs.
Match: EWM28880.1 (2-isopropylmalate synthase [Nannochloropsis gaditana]) HSP 1 Score: 978.0 bits (2527), Expect = 1.400e-281 Identity = 519/629 (82.51%), Postives = 563/629 (89.51%), Query Frame = 0
Query: 14 SCCTSSRIRQRVVVASSLLALAAAATSVTSAQAFILPVNQTPLPRSTSTSRPRHSSPFLWRHHAVRSSKPTIRMMATTVSKTSSSSTASNPQDDDIVRPIPTRHDIETGRDPMRVKIFDTTLRDGEQSPGCTMTAEEKVQVARQLSRLGVDIIEAGFPIASPGDFDAVKRIAQTVGNTVNPPIICGLARALHKDIETCWEAVKHAAFPRIHTFIATSDIHMQHKLKKSRAQVLEITREMVTYARSLCEDVEFSAEDALRSDPAFLYEVYSVAVEAGATTLNVPDTVGYTTPSEFKSLIRGLRANVKGIQGVTISVHGHDDLGMAVANFMAAIEGGARQVECTINGIGERAGNAALEEIVMALHVRKSFYNPRFGRTPESELALTNICTTEIYKTSRLVSTLTGMVIQPNKAIVGANAFAHESGIHQDGMLKNKSTYEIMDAESIGLAKNGLVLGKHSGRAAFRSRLTELGYESLTDAELNKAFVRFKEVADKKKEITNLDLESIVNDEMRLEFDAGNFELVRCQVICGDSQVPTATIGLLNKETNEEIIMAATGTGPVDAAYVAVTKALGIDKIKLLEFAVSSVTAGIDALGEVTVRLEDLSTGMIYYGRSANTDVVVAATQAYLSALN 643
S + R RQRV VASSLL LAAAA S ++ QAFILP+ P + S+ S+P R +AV S K +RM ATT++ SSS S P + D+VRP+PTRHD ETGRDPMRVKIFDTTLRDGEQSPGCTMTAEEK+QVA+QL++LGVD+IEAGFPIAS GDFDAV+RIA++VGN NPPIICGLARAL KDIETCW AVK+AAFPRIHTFIATSDIHM HKLKKSR +VL ITREMVTYARSLCEDVEFSAEDALRSDPAFLY+VYSVAVEAGATTLNVPDTVGYTTPSEFK+LIRGLRANVKG++GVTISVHGHDDLGMAVANFMAAI GGARQVECTINGIGERAGNAALEEIVMALHVRKSFYNPRFGR PE E+ALTNI TTEI+KTSRLVSTLTGMVIQPNKAIVGANAFAHESGIHQDG+LKNKSTYEIMDAESIGLAKNGLVLGKHSGR AFRSRLTELGYE+L+DAELNKAFVRFKEVADKKKEITNLDLESIVN+EMRL +DAG +EL+RCQVICGDSQVPTATI LLNKE N+E+ +AATGTGPVDAAYVAVTKALGI+KIKLLEF VSSVTAGIDALGEVTVRLEDLS+G IYYGRSANTDVV A +LS L+
Sbjct: 80 SASSHGRRRQRVAVASSLLVLAAAAVSTSTTQAFILPIP----PSAKSSPSFSSSAPRFARPNAVVSGKRVLRM-ATTLTDASSSDVIS-PAELDVVRPVPTRHDRETGRDPMRVKIFDTTLRDGEQSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFDAVRRIAESVGNMENPPIICGLARALKKDIETCWNAVKYAAFPRIHTFIATSDIHMLHKLKKSREEVLGITREMVTYARSLCEDVEFSAEDALRSDPAFLYQVYSVAVEAGATTLNVPDTVGYTTPSEFKALIRGLRANVKGVEGVTISVHGHDDLGMAVANFMAAIRGGARQVECTINGIGERAGNAALEEIVMALHVRKSFYNPRFGRAPEDEMALTNIQTTEIWKTSRLVSTLTGMVIQPNKAIVGANAFAHESGIHQDGILKNKSTYEIMDAESIGLAKNGLVLGKHSGRHAFRSRLTELGYEALSDAELNKAFVRFKEVADKKKEITNLDLESIVNEEMRLGYDAGKYELLRCQVICGDSQVPTATITLLNKEDNQEVTVAATGTGPVDAAYVAVTKALGIEKIKLLEFVVSSVTAGIDALGEVTVRLEDLSSGKIYYGRSANTDVVSAGV-LFLSTLS 701
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04810.1 ID=NO04G04810.1|Name=NO04G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp ATGCCGTCTTCTAGCTGCAACCCTAAGCCTTCGTCACTCTCCTGCTGTAC CTCGTCGAGGATAAGACAACGCGTAGTTGTAGCCTCCTCCCTCCTTGCCC TCGCCGCGGCCGCCACCTCGGTAACGAGCGCCCAGGCCTTTATCTTGCCA GTAAATCAAACACCTCTACCTCGCTCGACTTCTACCTCTAGGCCCCGTCA CTCTTCTCCTTTCCTCTGGCGTCACCATGCCGTACGCTCGTCCAAACCTA CCATCAGAATGATGGCTACCACCGTCAGTAAAACCAGCAGCAGCAGCACT GCCTCCAACCCTCAAGACGACGACATAGTGAGGCCAATTCCCACCCGCCA TGATATTGAGACTGGCCGTGACCCCATGCGGGTCAAGATTTTCGATACCA CCCTTCGAGATGGAGAGCAGAGCCCTGGGTGCACCATGACGGCGGAGGAA AAAGTACAGGTGGCGCGGCAGTTGTCCAGGCTGGGTGTGGACATCATCGA GGCTGGCTTCCCTATTGCCAGCCCAGGGGACTTCGATGCCGTGAAACGGA TTGCGCAAACCGTGGGGAATACCGTTAATCCCCCCATCATCTGCGGCTTG GCCAGGGCCTTGCACAAGGACATTGAGACGTGCTGGGAGGCTGTGAAACA CGCGGCGTTTCCCCGTATTCATACCTTCATTGCCACGAGTGATATCCACA TGCAGCACAAGCTTAAGAAGAGCCGGGCGCAGGTATTGGAAATTACGCGT GAAATGGTGACGTATGCCCGATCTCTGTGCGAAGACGTAGAGTTTTCGGC CGAAGACGCCCTCAGGTCCGACCCAGCGTTTCTGTATGAAGTGTATTCAG TGGCGGTGGAGGCGGGTGCGACTACTCTGAATGTTCCGGACACAGTGGGC TACACCACTCCCAGTGAATTTAAGTCCCTCATCCGGGGCCTCCGCGCCAA CGTCAAGGGCATCCAAGGCGTCACCATCTCCGTGCATGGACACGACGACC TGGGCATGGCAGTGGCTAACTTCATGGCGGCCATTGAAGGCGGCGCGCGG CAGGTGGAATGCACCATTAACGGCATTGGAGAACGCGCAGGAAACGCGGC ATTGGAAGAAATCGTCATGGCGCTGCACGTCCGTAAATCCTTCTACAACC CGAGGTTTGGACGCACGCCCGAGAGTGAGCTCGCTTTGACCAACATCTGT ACAACTGAGATTTATAAGACGTCCCGCCTGGTCTCTACATTGACGGGCAT GGTCATCCAGCCCAACAAGGCTATCGTCGGTGCCAACGCCTTTGCCCATG AGAGTGGCATCCACCAGGACGGCATGTTGAAGAACAAATCCACCTACGAG ATTATGGACGCCGAGTCCATCGGCCTGGCCAAGAACGGATTGGTCCTAGG GAAGCACTCCGGACGTGCCGCCTTCCGTTCCCGCCTGACGGAGCTGGGCT ACGAGTCCCTGACAGACGCCGAGTTGAATAAGGCCTTTGTGCGGTTCAAG GAGGTGGCGGACAAGAAGAAGGAAATCACCAACCTAGACTTGGAGTCCAT CGTGAATGATGAAATGCGCCTCGAGTTCGACGCGGGAAATTTCGAGCTTG TGCGCTGCCAGGTCATCTGCGGTGACAGCCAAGTACCCACGGCCACCATC GGCCTCCTCAACAAGGAAACGAACGAAGAAATCATCATGGCCGCCACTGG CACCGGCCCGGTGGACGCAGCCTATGTAGCAGTGACCAAGGCCCTGGGCA TCGATAAAATTAAGCTCCTGGAGTTCGCCGTCTCGTCCGTCACAGCAGGA ATCGATGCCCTGGGGGAAGTCACCGTTCGTCTGGAGGACTTGTCAACGGG CATGATTTATTATGGCCGTAGTGCTAACACGGACGTGGTAGTGGCGGCCA CTCAAGCTTATCTGAGTGCTCTTAACAGAGTGGCAGTCAGTCGAGGGTCC TTGCCCTTGCACCCGCAGTTTGGAAAGATCTAG back to topprotein sequence of NO04G04810.1 >NO04G04810.1-protein ID=NO04G04810.1-protein|Name=NO04G04810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=661bp MPSSSCNPKPSSLSCCTSSRIRQRVVVASSLLALAAAATSVTSAQAFILP VNQTPLPRSTSTSRPRHSSPFLWRHHAVRSSKPTIRMMATTVSKTSSSST ASNPQDDDIVRPIPTRHDIETGRDPMRVKIFDTTLRDGEQSPGCTMTAEE KVQVARQLSRLGVDIIEAGFPIASPGDFDAVKRIAQTVGNTVNPPIICGL ARALHKDIETCWEAVKHAAFPRIHTFIATSDIHMQHKLKKSRAQVLEITR EMVTYARSLCEDVEFSAEDALRSDPAFLYEVYSVAVEAGATTLNVPDTVG YTTPSEFKSLIRGLRANVKGIQGVTISVHGHDDLGMAVANFMAAIEGGAR QVECTINGIGERAGNAALEEIVMALHVRKSFYNPRFGRTPESELALTNIC TTEIYKTSRLVSTLTGMVIQPNKAIVGANAFAHESGIHQDGMLKNKSTYE IMDAESIGLAKNGLVLGKHSGRAAFRSRLTELGYESLTDAELNKAFVRFK EVADKKKEITNLDLESIVNDEMRLEFDAGNFELVRCQVICGDSQVPTATI GLLNKETNEEIIMAATGTGPVDAAYVAVTKALGIDKIKLLEFAVSSVTAG IDALGEVTVRLEDLSTGMIYYGRSANTDVVVAATQAYLSALNRVAVSRGS LPLHPQFGKI* back to topmRNA from alignment at chr4:1311978..1315726+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04810.1 ID=NO04G04810.1|Name=NO04G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=3749bp|location=Sequence derived from alignment at chr4:1311978..1315726+ (Nannochloropsis oceanica) ATGCCGTCTTCTAGCTGCAACCCTAAGCCTTCGTCACTCTCCTGCTGTAC
CTCGTCGAGGATAAGACAACGCGTAGTTGTAGCCTCCTCCCTCCTTGCCC
TCGCCGCGGCCGCCACCTCGGTAACGAGCGCCCAGGCCTTTATCTTGCCA
GTAAATCAAACACCTCTACCTCGCTCGACTTCTACCTCTAGGCCCCGTCA
CTCTTCTCCTTTCCTCTGGCGTCACCATGCCGTACGCTCGTCCAAACCTA
CCATCAGAATGATGGCTACCACCGTCAGTAAAACCAGCAGCAGCAGCACT
GCCTCCAACCCTCAAGACGACGACATAGTGAGGCCAATTCCCACCCGCCA
TGATATTGAGACTGGCCGTGACCCCATGCGGGTCAAGATTTTCGATACCA
CCCTTCGAGATGGAGAGCAGAGCCCTGGGTGCACCATGACGGCGGAGGAA
AAAGTACAGGTATATCAAGTGTGCTGTCACCCTTCCTCCCTCCCTTCCTC
CACACCTCCCACTTACTTTTGACGCAGACAGTGACCAAAATCTTGTGGGA
ATCAAGAAACATCACTCATTCTGAACAAACCGTTTTCTCTCCTCAGGTGG
CGCGGCAGTTGTCCAGGCTGGGTGTGGACATCATCGAGGCTGGCTTCCCT
ATTGCCAGCCCAGGGGACTTCGATGCCGTGAAACGGATTGCGCAAACCGT
GGGGAATACCGTTAATCCCCCCATCATCTGCGGCTTGGCCAGGGCCTTGC
ACAAGGACATTGAGACGTGCTGGGAGGCTGTGAAACACGCGGCGTTTCCC
CGTATTCATACCTTCATTGCCACGAGTGATATCCACATGCAGCACAAGCT
TAAGAAGAGCCGGGCGCAGGTACGGCCTTCTTTCCATCCTTCTTCCCTCC
TTTCTTTCTTCCTTTCTTTTCTCCTTCCCTCGTTTCTCGATTGTCCTCTC
TACCCTCCATCCTTCCCTCCCTTCCCCTCAGCTCTCCGCCCGGCCATACC
CCCACAAAATCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCT
CTCTCTCTCTCTCTCCCATCCTCAGGTATTGGAAATTACGCGTGAAATGG
TGACGTATGCCCGATCTCTGTGCGAAGACGTAGAGTTTTCGGCCGAAGAC
GCCCTCAGGTCCGACCCAGCGTTTCTGTATGAAGTGTATTCAGTGGCGGT
GGAGGCGGTAAGGAAAGGGTGGAGGGAGGGAGGTAGGGAGTGAGGGAAGA
AGAGGAAATGGCTGATCTATGGACACTTGATTCTCATAATTTTCTCACCT
CTCTCTCCCTCCCTCTCTCCCTCCCTCCTTCCTTTAGGGTGCGACTACTC
TGAATGTTCCGGACACAGTGGGCTACACCACTCCCAGTGAATTTAAGTCC
CTCATCCGGGGCCTCCGCGCCAACGTCAAGGGCATCCAAGGCGTCACCAT
CTCCGTGCATGGGTAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTC
CCTCCCTTCCTTCTTCCCTCCCTCCCTCCATCCATCCCTGCCTCCATCCC
TGCCTGTCGTGCAGTGTAGCGGTATCCCTGCCTGTCGTGCAGTGTAGCGG
TATTAAGAAGCCATCAGGGGCGTCGCCTCACCATACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCAGACACGACGACCTGGGCATGGC
AGTGGCTAACTTCATGGCGGCCATTGAAGGCGGCGCGCGGCAGGTGGAAT
GCACCATTAACGGCATTGGAGAACGCGCAGGAAACGCGGCATTGGAAGAA
ATCGTCATGGCGCTGCACGTCCGTAAATCCTTCTACAACCCGAGGTAAAA
CTACCTTGCTCTCTTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTAGGGTCGGATGCGAACGCGAAGACGACGTTGCGTTTCACCTGCATAT
CCTTTCCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCTTCCCTTGCTCAGGTTTGGACGCACGCCCGAGAGTGAGCTCGCTTTG
ACCAACATCTGTACAACTGAGATTTATAAGACGTCCCGCCTGGTCTCTAC
ATTGACGGGCATGGTGCGGAGGGAGGGAGGGACGGAGGGAGGGAGGAAAA
GGAGGCATAGGAGAAAACATGGTATCACCAAGTGCTGTTTCTCGTCCTCT
CCCTCCATCCCACGATTGCCCAGCACCCTCATCCCCCCTCCATTCCTCCT
TCCCTCCCTCTCCCCTCCCTCAGGTCATCCAGCCCAACAAGGCTATCGTC
GGTGCCAACGCCTTTGCCCATGAGAGTGGCATCCACCAGGACGGCATGTT
GAAGAACAAATCCACCTACGAGATTATGGACGCCGAGTCCATCGGCCTGG
CCAAGAACGGTACGCCCCTCCCTTCCTCCCTCCCTCCCTCCCTCTTTCCA
GGCCTCGCTCACGGAGCGGGCTCATGGCTCTTGACTCACCTTTCCCTCCC
TCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGATTGGTCC
TAGGGAAGCACTCCGGACGTGCCGCCTTCCGTTCCCGCCTGACGGAGCTG
GGCTACGAGTCCCTGACAGACGCCGAGTTGAATAAGGCCTTTGTGCGGTT
CAAGGAGGTGGCGGACAAGAAGAAGGTGAGGGCGGGAGGGAGGGAGGGAG
GGGAGGGAGATGAGACTCGGACATGGCAAGCCCGCCAGGACTCAAATTGA
CAGGTCCGTCAGAACCCACCGCATCAAACTCTTCTTCCCCCCCTCCCACC
CTCCCTCCCTCCCTCCCTCCCCTCCGTCTCCCAGGAAATCACCAACCTAG
ACTTGGAGTCCATCGTGAATGATGAAATGCGCCTCGAGTTCGACGCGGGA
AATTTCGAGCTTGTGCGCTGCCAGGTATGAATATAAAGGGGGGAGGGAGG
AAGGGAAGGAGGGAGGGAAGGAGGGAGAGGTTGCATAAGGCAACCTCTTC
AAACACCGAATGAGCCAAAACACTCACCCATCTTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGTCATCTGCGGTGAC
AGCCAAGTACCCACGGCCACCATCGGCCTCCTCAACAAGGAAACGAACGA
AGAAATCATCATGGCCGCCACTGGCACCGGTACGTCTTTGTCCTCCCTCC
CTCCTTCCCTCCCTTTCCCCATCCTTTGACAAGCGGCTTCCTTACCAGCT
GCCCTCCCTCCCCCCTTCCTCCCTCCTTCCCTCCCCCCTTCCTCCTTCCT
TCCCTCCCTCCCTTCCTCCCCCCTACCATAGGCCCGGTGGACGCAGCCTA
TGTAGCAGTGACCAAGGCCCTGGGCATCGATAAAATTAAGGTACGGAGGG
AGGGAGGGAGGGAGGGAGGATTGATGAGTCTTCGAAAAGGAAAACAAGTC
TTGCTGACGCATGCACTGACAATCTTTTTCCCTACCCCCCTCCCTCCCTC
CCTCCTTCCCTCCTTCCCTCCTCCCTCCAGCTCCTGGAGTTCGCCGTCTC
GTCCGTCACAGCAGGAATCGATGCCCTGGGGGAAGTCACCGTTCGTCTGG
AGGACTTGTCAACGGGCATGATTTATTATGGCCGTAGTGCTAACACGGAC
GTGGTAGTGGCGGCCACTCAAGCTTATCTGAGTGCTCTTAACAGAGTGGC
AGTCAGTCGAGGGTCCTTGCCCTTGCACCCGCAGTTTGGAAAGATCTAG back to topCoding sequence (CDS) from alignment at chr4:1311978..1315726+ >NO04G04810.1 ID=NO04G04810.1|Name=NO04G04810.1|organism=Nannochloropsis oceanica|type=CDS|length=1983bp|location=Sequence derived from alignment at chr4:1311978..1315726+ (Nannochloropsis oceanica) ATGCCGTCTTCTAGCTGCAACCCTAAGCCTTCGTCACTCTCCTGCTGTAC CTCGTCGAGGATAAGACAACGCGTAGTTGTAGCCTCCTCCCTCCTTGCCC TCGCCGCGGCCGCCACCTCGGTAACGAGCGCCCAGGCCTTTATCTTGCCA GTAAATCAAACACCTCTACCTCGCTCGACTTCTACCTCTAGGCCCCGTCA CTCTTCTCCTTTCCTCTGGCGTCACCATGCCGTACGCTCGTCCAAACCTA CCATCAGAATGATGGCTACCACCGTCAGTAAAACCAGCAGCAGCAGCACT GCCTCCAACCCTCAAGACGACGACATAGTGAGGCCAATTCCCACCCGCCA TGATATTGAGACTGGCCGTGACCCCATGCGGGTCAAGATTTTCGATACCA CCCTTCGAGATGGAGAGCAGAGCCCTGGGTGCACCATGACGGCGGAGGAA AAAGTACAGGTGGCGCGGCAGTTGTCCAGGCTGGGTGTGGACATCATCGA GGCTGGCTTCCCTATTGCCAGCCCAGGGGACTTCGATGCCGTGAAACGGA TTGCGCAAACCGTGGGGAATACCGTTAATCCCCCCATCATCTGCGGCTTG GCCAGGGCCTTGCACAAGGACATTGAGACGTGCTGGGAGGCTGTGAAACA CGCGGCGTTTCCCCGTATTCATACCTTCATTGCCACGAGTGATATCCACA TGCAGCACAAGCTTAAGAAGAGCCGGGCGCAGGTATTGGAAATTACGCGT GAAATGGTGACGTATGCCCGATCTCTGTGCGAAGACGTAGAGTTTTCGGC CGAAGACGCCCTCAGGTCCGACCCAGCGTTTCTGTATGAAGTGTATTCAG TGGCGGTGGAGGCGGGTGCGACTACTCTGAATGTTCCGGACACAGTGGGC TACACCACTCCCAGTGAATTTAAGTCCCTCATCCGGGGCCTCCGCGCCAA CGTCAAGGGCATCCAAGGCGTCACCATCTCCGTGCATGGACACGACGACC TGGGCATGGCAGTGGCTAACTTCATGGCGGCCATTGAAGGCGGCGCGCGG CAGGTGGAATGCACCATTAACGGCATTGGAGAACGCGCAGGAAACGCGGC ATTGGAAGAAATCGTCATGGCGCTGCACGTCCGTAAATCCTTCTACAACC CGAGGTTTGGACGCACGCCCGAGAGTGAGCTCGCTTTGACCAACATCTGT ACAACTGAGATTTATAAGACGTCCCGCCTGGTCTCTACATTGACGGGCAT GGTCATCCAGCCCAACAAGGCTATCGTCGGTGCCAACGCCTTTGCCCATG AGAGTGGCATCCACCAGGACGGCATGTTGAAGAACAAATCCACCTACGAG ATTATGGACGCCGAGTCCATCGGCCTGGCCAAGAACGGATTGGTCCTAGG GAAGCACTCCGGACGTGCCGCCTTCCGTTCCCGCCTGACGGAGCTGGGCT ACGAGTCCCTGACAGACGCCGAGTTGAATAAGGCCTTTGTGCGGTTCAAG GAGGTGGCGGACAAGAAGAAGGAAATCACCAACCTAGACTTGGAGTCCAT CGTGAATGATGAAATGCGCCTCGAGTTCGACGCGGGAAATTTCGAGCTTG TGCGCTGCCAGGTCATCTGCGGTGACAGCCAAGTACCCACGGCCACCATC GGCCTCCTCAACAAGGAAACGAACGAAGAAATCATCATGGCCGCCACTGG CACCGGCCCGGTGGACGCAGCCTATGTAGCAGTGACCAAGGCCCTGGGCA TCGATAAAATTAAGCTCCTGGAGTTCGCCGTCTCGTCCGTCACAGCAGGA ATCGATGCCCTGGGGGAAGTCACCGTTCGTCTGGAGGACTTGTCAACGGG CATGATTTATTATGGCCGTAGTGCTAACACGGACGTGGTAGTGGCGGCCA CTCAAGCTTATCTGAGTGCTCTTAACAGAGTGGCAGTCAGTCGAGGGTCC TTGCCCTTGCACCCGCAGTTTGGAAAGATCTAG back to top
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