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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1309760..1311397 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04800.2 vs.
Match: EWM28873.1 (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana]) HSP 1 Score: 342.8 bits (878), Expect = 1.700e-90 Identity = 211/440 (47.95%), Postives = 262/440 (59.55%), Query Frame = 0
Query: 34 QDITSRKILQLMRELSHSAFSGVLLHGNKGSNDNP-HSLETLDIGPGPHVRVRLCVPPHLCDS----NALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPLVHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIARREIKGRVVHVREFGRVVVRNLIVLPHL-LTSPILLLSLPPSLPPSPVDVNQLLDLQNFLIIHHPSSPSSSSSPFCYEATAS--FFVAPAVCNSFGSLHGGAVAMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLVIKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTRKSDGRYLTQSHVLFD 466
Q+ TSR++L+L+ +S SAFSGVLL + N +++ L IGPGP VR+RL VP HLCD+ + LL++GA+ AWFDEVSSW FVSADGRHRPGVSVSLNTTVL WV G+EVEI+SHCKK+G+TLGFADM+L DVATG+ELA GRHVKFLKMG W VAMH WAFPL + + S + LP +R +K + P + R G V+ + L+ L + + P S P + P +S P EA+AS P VCNSFGSLHGGA A+LAERAAL LY QAARWAG+ + L R R+LS+DYMSPC KNTELLL+++G++ +R S + L A +G L IP SY+V FTRK DGRYLTQ HVL D
Sbjct: 18 QERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRT-----------------QKSSSFPPEMAPSPDLPRTEPGSAVN--------INRLLALDNFHVYEPAGAASPPLAFP--------------------------ASVPLTMEASASFRVI--PQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPH--PQGNL-IPMSYQVLFTRKKDGRYLTQCHVLLD 401
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp ATCAGGCATATCAAGCCATTAGGACGCTGCAGCGGTCCCTTGGTAGGCAT GGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAACAT TCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACCAG GACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCACAG TGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAACC CGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTGTA CGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAATTC CGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGTTT CGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCACT GTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCACTG CAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGATG TGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCACGTTAAATTTTTGAAA ATGGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTTGT GCACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGAAG GAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGA AAGAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCACG GCGGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGTAG TAGTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCCTC CTTCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAACCA ACTGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCCTT CTTCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTG GCCCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTTGC TATGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCGAT GGGCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGAGT GTGGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTGAT CAAAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTCTT GGCCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGGAG AAAGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGCAA GAGCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGGTA GAATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAAAACTAC GAACAAAAAAGAAAAGAAAGTGTTGATTATGATTCTGGCA back to topprotein sequence of NO04G04800.2 >NO04G04800.2-protein ID=NO04G04800.2-protein|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp MAPSSASFKALLPLASTFQTTTCCEATTPRASDQDITSRKILQLMRELSH SAFSGVLLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLN SGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESH CKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPL VHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIA RREIKGRVVHVREFGRVVVRNLIVLPHLLTSPILLLSLPPSLPPSPVDVN QLLDLQNFLIIHHPSSPSSSSSPFCYEATASFFVAPAVCNSFGSLHGGAV AMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLV IKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTR KSDGRYLTQSHVLFDVGRMEEEGRRRRMARL* back to topmRNA from alignment at chr4:1309760..1311397+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at chr4:1309760..1311397+ (Nannochloropsis oceanica) ATCAGGCATATCAAGCCATTAGGACGCTGCAGCGGTCCCTTGGTAGGCAT
GGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAACAT
TCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACCAG
GACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCACAG
TGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAACC
CGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTGTA
CGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAATTC
CGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGTTT
CGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCACT
GTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCACTG
CAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGATG
TGGCGACTGGAAGGGAGGTATGTAGCCGTTGGTGGGAAAGAGGGGGAGGG
GACGTGTCATCTTAAACATACTGCTTATCCTCTTCTTCCTTCCTTCTTCC
CTCCTCTTCTTCCAGCTCGCCACTGGTCGGCACGTTAAATTTTTGAAAAT
GGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTTGTGC
ACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGAAGGA
GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGAAA
GAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCACGGC
GGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGTAGTA
GTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCCTCCT
TCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAACCAAC
TGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCCTTCT
TCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTGGC
CCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTTGCTA
TGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCGATGG
GCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGAGTGT
GGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTGATCA
AAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTCTTGG
CCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGGAGAA
AGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGCAAGA
GCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGGTAGA
ATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAAAACTACGA
ACAAAAAAGAAAAGAAAGTGTTGATTATGATTCTGGCA back to topCoding sequence (CDS) from alignment at chr4:1309760..1311397+ >NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr4:1309760..1311397+ (Nannochloropsis oceanica) ATGGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAAC ATTCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACC AGGACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCAC AGTGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAA CCCGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTG TACGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAAT TCCGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGT TTCGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCA CTGTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCAC TGCAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGA TGTGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCACGTTAAATTTTTGA AAATGGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTT GTGCACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGA AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCG GAAAGAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCA CGGCGGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGT AGTAGTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCC TCCTTCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAAC CAACTGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCC TTCTTCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCG TGGCCCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTT GCTATGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCG ATGGGCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGA GTGTGGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTG ATCAAAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTC TTGGCCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGG AGAAAGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGC AAGAGCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGG TAGAATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAA back to top
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