NO04G04800.2, NO04G04800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04800.2
Unique NameNO04G04800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr4:1309760..1311397 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1309760..1311397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04800.2 vs.
Match: EWM28873.1 (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana])

HSP 1 Score: 342.8 bits (878), Expect = 1.700e-90
Identity = 211/440 (47.95%), Postives = 262/440 (59.55%), Query Frame = 0 
Query:   34 QDITSRKILQLMRELSHSAFSGVLLHGNKGSNDNP-HSLETLDIGPGPHVRVRLCVPPHLCDS----NALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPLVHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIARREIKGRVVHVREFGRVVVRNLIVLPHL-LTSPILLLSLPPSLPPSPVDVNQLLDLQNFLIIHHPSSPSSSSSPFCYEATAS--FFVAPAVCNSFGSLHGGAVAMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLVIKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTRKSDGRYLTQSHVLFD 466
            Q+ TSR++L+L+  +S SAFSGVLL  +   N     +++ L IGPGP VR+RL VP HLCD+    + LL++GA+ AWFDEVSSW FVSADGRHRPGVSVSLNTTVL WV  G+EVEI+SHCKK+G+TLGFADM+L DVATG+ELA GRHVKFLKMG  W VAMH WAFPL + + S + LP +R                    +K +  P     +    R   G  V+        +  L+ L +  +  P    S P + P                          +S P   EA+AS      P VCNSFGSLHGGA A+LAERAAL LY QAARWAG+  +  L R R+LS+DYMSPC KNTELLL+++G++ +R        S    +   L  A     +G L IP SY+V FTRK DGRYLTQ HVL D
Sbjct:   18 QERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRT-----------------QKSSSFPPEMAPSPDLPRTEPGSAVN--------INRLLALDNFHVYEPAGAASPPLAFP--------------------------ASVPLTMEASASFRVI--PQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPH--PQGNL-IPMSYQVLFTRKKDGRYLTQCHVLLD 401
The following BLAST results are available for this feature:
BLAST of NO04G04800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28873.11.700e-9047.95acyl-coenzyme a thioesterase 13 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04800NO04G04800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04800.2NO04G04800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04800.2.cds1NO04G04800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04800.2.cds2NO04G04800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
ATCAGGCATATCAAGCCATTAGGACGCTGCAGCGGTCCCTTGGTAGGCAT
GGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAACAT
TCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACCAG
GACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCACAG
TGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAACC
CGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTGTA
CGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAATTC
CGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGTTT
CGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCACT
GTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCACTG
CAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGATG
TGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCACGTTAAATTTTTGAAA
ATGGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTTGT
GCACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGAAG
GAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGA
AAGAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCACG
GCGGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGTAG
TAGTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCCTC
CTTCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAACCA
ACTGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCCTT
CTTCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTG
GCCCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTTGC
TATGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCGAT
GGGCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGAGT
GTGGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTGAT
CAAAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTCTT
GGCCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGGAG
AAAGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGCAA
GAGCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGGTA
GAATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAAAACTAC
GAACAAAAAAGAAAAGAAAGTGTTGATTATGATTCTGGCA
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protein sequence of NO04G04800.2

>NO04G04800.2-protein ID=NO04G04800.2-protein|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MAPSSASFKALLPLASTFQTTTCCEATTPRASDQDITSRKILQLMRELSH
SAFSGVLLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLN
SGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESH
CKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPL
VHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIA
RREIKGRVVHVREFGRVVVRNLIVLPHLLTSPILLLSLPPSLPPSPVDVN
QLLDLQNFLIIHHPSSPSSSSSPFCYEATASFFVAPAVCNSFGSLHGGAV
AMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLV
IKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTR
KSDGRYLTQSHVLFDVGRMEEEGRRRRMARL*
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mRNA from alignment at chr4:1309760..1311397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at chr4:1309760..1311397+ (Nannochloropsis oceanica)
ATCAGGCATATCAAGCCATTAGGACGCTGCAGCGGTCCCTTGGTAGGCAT
GGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAACAT
TCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACCAG
GACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCACAG
TGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAACC
CGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTGTA
CGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAATTC
CGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGTTT
CGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCACT
GTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCACTG
CAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGATG
TGGCGACTGGAAGGGAGGTATGTAGCCGTTGGTGGGAAAGAGGGGGAGGG
GACGTGTCATCTTAAACATACTGCTTATCCTCTTCTTCCTTCCTTCTTCC
CTCCTCTTCTTCCAGCTCGCCACTGGTCGGCACGTTAAATTTTTGAAAAT
GGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTTGTGC
ACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGAAGGA
GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGAAA
GAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCACGGC
GGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGTAGTA
GTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCCTCCT
TCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAACCAAC
TGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCCTTCT
TCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTGGC
CCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTTGCTA
TGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCGATGG
GCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGAGTGT
GGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTGATCA
AAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTCTTGG
CCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGGAGAA
AGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGCAAGA
GCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGGTAGA
ATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAAAACTACGA
ACAAAAAAGAAAAGAAAGTGTTGATTATGATTCTGGCA
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Coding sequence (CDS) from alignment at chr4:1309760..1311397+

>NO04G04800.2 ID=NO04G04800.2|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr4:1309760..1311397+ (Nannochloropsis oceanica)
ATGGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAAC
ATTCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACC
AGGACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCAC
AGTGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAA
CCCGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTG
TACGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAAT
TCCGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGT
TTCGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCA
CTGTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCAC
TGCAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGA
TGTGGCGACTGGAAGGGAGCTCGCCACTGGTCGGCACGTTAAATTTTTGA
AAATGGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTT
GTGCACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGA
AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCG
GAAAGAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCA
CGGCGGGAAATTAAAGGTAGGGTGGTACATGTCCGGGAATTTGGAAGGGT
AGTAGTGCGTAACCTTATCGTTCTCCCACACTTGCTCACGTCTCCAATCC
TCCTTCTCTCCCTTCCTCCCTCACTCCCTCCCTCTCCAGTCGACGTCAAC
CAACTGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCC
TTCTTCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCG
TGGCCCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTT
GCTATGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCG
ATGGGCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGA
GTGTGGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTG
ATCAAAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTC
TTGGCCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGG
AGAAAGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGC
AAGAGCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGG
TAGAATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAA
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Synonyms
Publications