NO04G04680.1, NO04G04680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04680.1
Unique NameNO04G04680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr4:1275698..1277022 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1275698..1277022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G04680.1 vs.
Match: EWM28859.1 (nadh ubiquinone oxidoreductase b22-like subunit [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 1.400e-70
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 0 
Query:    1 MANASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEELHEEPINIDMTPVVKGEKGDGRVLVDSANKA 153
            MANASMRAAAAQYINPA +LSHKT V+RLYRKSLKTLNSWAIDREVFLSEA K+R+ FS+NAHLAPESGKVKALVR+A E+LL +SHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPE++ EEP+NIDMTPVVKGEKGDGRVLVDSANKA
Sbjct:    1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKA 152
The following BLAST results are available for this feature:
BLAST of NO04G04680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28859.11.400e-7088.16nadh ubiquinone oxidoreductase b22-like subunit [N... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04680NO04G04680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04680.1NO04G04680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04680.1.cds1NO04G04680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04680.1.cds2NO04G04680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04680.1 ID=NO04G04680.1|Name=NO04G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
CGATAAGCGAGCAAAGAAGGCATCTTTGCTCATTCTTGAGCCAGATGTAC
CCTTGAGCACATTACGCCCCTGACCCTACAGCTACCAGAACGACACCCAC
TACAGCACGAAGAAGAAGGCGTGGGAGCGGGTGTGGTGGCTGTAGAAGCC
GCAGCGAAGCAAGCTGCCACTCATTTGTCGCCTCCCCCATCCGCCCTACC
CTCAGTGCCCAACGCCCTCTCACTCGCTCCCCGCCCTCCCCATCCTCCCA
CCCTCCACCCCTTCAGGTCACAGACAGGCAAGCAGGGCAGGCAGGCAGCC
ATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATCAACCCCGC
CGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCGCAAAAGCC
TCAAGACACTCAATTCCTGGGCGATTGATCGCGAAGTGTTCCTAAGCGAA
GCCAACAAAATCCGCAGCGAATTTTCGTCCAACGCACACCTTGCTCCCGA
GTCAGGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAGAGAAGCTGCTGA
CACACTCGCATCCGGACAAGTACATTTTGCCCTGGATGCCGGGAGGAACT
TTGTTTATGCGTAACCCGCCCTTGCCCTTCGACGTGGTGTTTGCAGGCCA
CGTGCCCGAGGAGCTGCACGAGGAGCCAATTAATATAGACATGACACCGG
TGGTGAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTGGACAGTGCCAAT
AAAGCCTACTTTTAGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGG
GAGGAAAGGAGGGAGGGAGGAGGAGTGTATGTAGAAGATGAAAGGGGAGG
AGGAGAAGTAATGGGAGAGGGTGGTTGAAGAATGGGGGGGGAAAGGGAGT
GGAAGACAAGAAGCACAGCAAATATTGAGATGAAGGAGCCCGCGCGAGAG
AGAGACGGGACAA
back to top

protein sequence of NO04G04680.1

>NO04G04680.1-protein ID=NO04G04680.1-protein|Name=NO04G04680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MANASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSE
ANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGT
LFMRNPPLPFDVVFAGHVPEELHEEPINIDMTPVVKGEKGDGRVLVDSAN
KAYF*
back to top

mRNA from alignment at chr4:1275698..1277022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04680.1 ID=NO04G04680.1|Name=NO04G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at chr4:1275698..1277022- (Nannochloropsis oceanica)
CGATAAGCGAGCAAAGAAGGCATCTTTGCTCATTCTTGAGCCAGATGTAC
CCTTGAGCACATTACGCCCCTGACCCTACAGCTACCAGAACGACACCCAC
TACAGCACGAAGAAGAAGGCGTGGGAGCGGGTGTGGTGGCTGTAGAAGCC
GCAGCGAAGCAAGCTGCCACTCATTTGTCGCCTCCCCCATCCGCCCTACC
CTCAGTGCCCAACGCCCTCTCACTCGCTCCCCGCCCTCCCCATCCTCCCA
CCCTCCACCCCTTCAGGTCACAGACAGGCAAGCAGGGCAGGCAGGCAGCC
ATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATCAACCCCGC
CGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCGCAAAAGCC
TCAAGACACTCAATTCCTGGTCCGTATGTATACATGGCGTGGGCCTGGGC
CTCCCTTCCTCCCTCTCTCCGTACACCTTTGTGTGCTTGTGTGCTTGTGT
GCTTCTACTATTGCAGTCGACACCGTGAGGGTCTGCTGCTTGTGTGTGGG
GTCATCCTCACCTCCTTTCCTCTCTTCTTCCATCTCTCCCCTTGTTCCCT
TGCCTTGGCGTGCCTGTTAGGACATCTTATTGCACTCATTGGCCTTCCTT
CTCCGCATATGCCCACTTTGTATGGAACCTATAGGATGCTCGCGCCGTCC
CACTCACTCACTCACCCTCCCTCCCTCCATCTCCCTCTGTCCCTCCCTCC
TTTCATCCTCACCCCCTCGCCACCCACACAGGGCGATTGATCGCGAAGTG
TTCCTAAGCGAAGCCAACAAAATCCGCAGCGAATTTTCGTCCAACGCACA
CCTTGCTCCCGAGTCAGGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAG
AGAAGCTGCTGACACACTCGCATCCGGACAAGTACATTTTGCCCTGGATG
CCGGGAGGAACTTTGTTTATGCGTAACCCGCCCTTGCCCTTCGACGTGGT
GTTTGCAGGCCACGTGCCCGAGGAGCTGCACGAGGAGCCAATTAATATAG
ACATGACACCGGTGGTGAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTG
GACAGTGCCAATAAAGCCTACTTTTAGAGGAAGGGAGGGAGGAAGGGAGG
GAGGAAGGGAGGGAGGAAAGGAGGGAGGGAGGAGGAGTGTATGTAGAAGA
TGAAAGGGGAGGAGGAGAAGTAATGGGAGAGGGTGGTTGAAGAATGGGGG
GGGAAAGGGAGTGGAAGACAAGAAGCACAGCAAATATTGAGATGAAGGAG
CCCGCGCGAGAGAGAGACGGGACAA
back to top

Coding sequence (CDS) from alignment at chr4:1275698..1277022-

>NO04G04680.1 ID=NO04G04680.1|Name=NO04G04680.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr4:1275698..1277022- (Nannochloropsis oceanica)
ATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATCAACCCCGC
CGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCGCAAAAGCC
TCAAGACACTCAATTCCTGGGCGATTGATCGCGAAGTGTTCCTAAGCGAA
GCCAACAAAATCCGCAGCGAATTTTCGTCCAACGCACACCTTGCTCCCGA
GTCAGGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAGAGAAGCTGCTGA
CACACTCGCATCCGGACAAGTACATTTTGCCCTGGATGCCGGGAGGAACT
TTGTTTATGCGTAACCCGCCCTTGCCCTTCGACGTGGTGTTTGCAGGCCA
CGTGCCCGAGGAGCTGCACGAGGAGCCAATTAATATAGACATGACACCGG
TGGTGAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTGGACAGTGCCAAT
AAAGCCTACTTTTAG
back to top
Synonyms
Publications