NO04G04580.1, NO04G04580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04580.1
Unique NameNO04G04580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr4:1247212..1248721 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1247212..1248721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G04580.1 vs.
Match: EWM28836.1 (cdp-diacylglycerol-inositol 3-phosphatidyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 2.200e-99
Identity = 205/331 (61.93%), Postives = 250/331 (75.53%), Query Frame = 0
Query:    1 MPRTSPYRTRGGRTVKSTINDDSTDVA-TTTIKPRASSRRATISG--SSAAVRKTPS-TTITSPSSIASSKKSNKPSNITSSRA---TSKWSIFFYLPNLIGYLRVIATLYSLYLGVQRKAKWENVVGLYFLAFALDAVDGHVARMVGQESGFGGVLDMVTDRTATAGLVMINLLVEIEDWKKFGWISLCMLDISSHWFHCIAAAGRHHKSAEATAGKNFILQWYYACKPLFFACCTGQEFFYLLNFIKEKGVTFGRVAAPEWLHPEMKVHFPIDILESLWWITMVLAGIKQVVNVAQLASAAVSLAEEDAE-KDMKKKGKQGEKIKMEVE 324
            MPRTSPYRTRGGR VKST N  S D + T+T KPRASSRRATI+G  +S   +++P+ +T T  S   S K+S+   +   SR+    SKW++ FY PN+IGY+RV  TLY+ YLGVQRK+ W +VV LYFLAFALDAVDG+VARM GQESGFGGVLDMVTDRTATAGLVM+NL+VE ++ +KFGWI LCMLDI SHWFHC+AAAG HHKS EATAGKN +L+WYYACKPLFFACC GQE FYL+N+I+ KG  FG +A P W+  E++   P  +   L  IT+V A IKQVVNV QLASAAV+LAE DA+ K +K    +G+  +  V+
Sbjct:    1 MPRTSPYRTRGGRVVKSTANVSSGDGSITSTTKPRASSRRATIAGPLASPVTKRSPAPSTPTYESPSTSKKQSSARKSAGGSRSKGSVSKWAVLFYAPNVIGYVRVAVTLYAFYLGVQRKSDWRSVVSLYFLAFALDAVDGYVARMCGQESGFGGVLDMVTDRTATAGLVMLNLVVEGDELRKFGWICLCMLDIGSHWFHCVAAAGAHHKSEEATAGKNAVLRWYYACKPLFFACCLGQEAFYLINYIQRKGGKFGGIAMPSWVPREVEELLPTTVEGWLASITLVFATIKQVVNVVQLASAAVTLAEADAQKKKLKANTTEGQTRRQNVK 331          
The following BLAST results are available for this feature:
BLAST of NO04G04580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28836.12.200e-9961.93cdp-diacylglycerol-inositol 3-phosphatidyltransfer... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04580NO04G04580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04580.1NO04G04580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04580.1.cds1NO04G04580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04580.1.cds2NO04G04580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04580.1.cds3NO04G04580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG
CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC
GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG
AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA
AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT
GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT
GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA
AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG
GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG
GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT
GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA
TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG
CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG
GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT
TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT
GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT
CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA
AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG
GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA
GATAAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGA
CAGCACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGCAGCAACAACAAC
AACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAGAA
CAAGAAGAACGATAATGACGACGACGACGATGACAACAACGACAACGATG
ACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGACGCATCAATGA
back to top

protein sequence of NO04G04580.1

>NO04G04580.1-protein ID=NO04G04580.1-protein|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MPRTSPYRTRGGRTVKSTINDDSTDVATTTIKPRASSRRATISGSSAAVR
KTPSTTITSPSSIASSKKSNKPSNITSSRATSKWSIFFYLPNLIGYLRVI
ATLYSLYLGVQRKAKWENVVGLYFLAFALDAVDGHVARMVGQESGFGGVL
DMVTDRTATAGLVMINLLVEIEDWKKFGWISLCMLDISSHWFHCIAAAGR
HHKSAEATAGKNFILQWYYACKPLFFACCTGQEFFYLLNFIKEKGVTFGR
VAAPEWLHPEMKVHFPIDILESLWWITMVLAGIKQVVNVAQLASAAVSLA
EEDAEKDMKKKGKQGEKIKMEVEVEREGQKRGGTAHFFPASGKKRSSNNN
NNNHNNNNNNNNNNNKNKKNDNDDDDDDNNDNDDNNDNCEAVFPPTHQ*
back to top

mRNA from alignment at chr4:1247212..1248721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp|location=Sequence derived from alignment at chr4:1247212..1248721- (Nannochloropsis oceanica)
ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA GTAAGGAGGGAGGGAGGGAGTAAGGAGAGACGAGGATGGACCTATGGGGC ACGGGAGCACTTGAGAGATGATTTGGAAGGTGATGACGGAGAGAGGAAAG TAGGGGAAGAAGGTTACAAAGTAGGAGAGGGGCTACGTCTTCTACAGGAT AAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGACAG CACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGGTGACTAGCGACCATT CGTGGGGCTGCTAGCCGCCGCTTCTCGCGGTTTCCTCAACAATAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAG CAGCAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACA ACAACAACAAGAACAAGAAGAACGATAATGACGACGACGACGATGACAAC AACGACAACGATGACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGAC GCATCAATGA
back to top

Coding sequence (CDS) from alignment at chr4:1247212..1248721-

>NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr4:1247212..1248721- (Nannochloropsis oceanica)
ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG
CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC
GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG
AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA
AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT
GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT
GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA
AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG
GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG
GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT
GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA
TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG
CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG
GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT
TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT
GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT
CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA
AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG
GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA
GATAAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGA
CAGCACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGCAGCAACAACAAC
AACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAGAA
CAAGAAGAACGATAATGACGACGACGACGATGACAACAACGACAACGATG
ACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGACGCATCAATGA
back to top
Synonyms
Publications