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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1247212..1248721 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04580.1 vs.
Match: EWM28836.1 (cdp-diacylglycerol-inositol 3-phosphatidyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 372.1 bits (954), Expect = 2.200e-99 Identity = 205/331 (61.93%), Postives = 250/331 (75.53%), Query Frame = 0
Query: 1 MPRTSPYRTRGGRTVKSTINDDSTDVA-TTTIKPRASSRRATISG--SSAAVRKTPS-TTITSPSSIASSKKSNKPSNITSSRA---TSKWSIFFYLPNLIGYLRVIATLYSLYLGVQRKAKWENVVGLYFLAFALDAVDGHVARMVGQESGFGGVLDMVTDRTATAGLVMINLLVEIEDWKKFGWISLCMLDISSHWFHCIAAAGRHHKSAEATAGKNFILQWYYACKPLFFACCTGQEFFYLLNFIKEKGVTFGRVAAPEWLHPEMKVHFPIDILESLWWITMVLAGIKQVVNVAQLASAAVSLAEEDAE-KDMKKKGKQGEKIKMEVE 324
MPRTSPYRTRGGR VKST N S D + T+T KPRASSRRATI+G +S +++P+ +T T S S K+S+ + SR+ SKW++ FY PN+IGY+RV TLY+ YLGVQRK+ W +VV LYFLAFALDAVDG+VARM GQESGFGGVLDMVTDRTATAGLVM+NL+VE ++ +KFGWI LCMLDI SHWFHC+AAAG HHKS EATAGKN +L+WYYACKPLFFACC GQE FYL+N+I+ KG FG +A P W+ E++ P + L IT+V A IKQVVNV QLASAAV+LAE DA+ K +K +G+ + V+
Sbjct: 1 MPRTSPYRTRGGRVVKSTANVSSGDGSITSTTKPRASSRRATIAGPLASPVTKRSPAPSTPTYESPSTSKKQSSARKSAGGSRSKGSVSKWAVLFYAPNVIGYVRVAVTLYAFYLGVQRKSDWRSVVSLYFLAFALDAVDGYVARMCGQESGFGGVLDMVTDRTATAGLVMLNLVVEGDELRKFGWICLCMLDIGSHWFHCVAAAGAHHKSEEATAGKNAVLRWYYACKPLFFACCLGQEAFYLINYIQRKGGKFGGIAMPSWVPREVEELLPTTVEGWLASITLVFATIKQVVNVVQLASAAVTLAEADAQKKKLKANTTEGQTRRQNVK 331
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA GATAAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGA CAGCACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGCAGCAACAACAAC AACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAGAA CAAGAAGAACGATAATGACGACGACGACGATGACAACAACGACAACGATG ACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGACGCATCAATGA back to topprotein sequence of NO04G04580.1 >NO04G04580.1-protein ID=NO04G04580.1-protein|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp MPRTSPYRTRGGRTVKSTINDDSTDVATTTIKPRASSRRATISGSSAAVR KTPSTTITSPSSIASSKKSNKPSNITSSRATSKWSIFFYLPNLIGYLRVI ATLYSLYLGVQRKAKWENVVGLYFLAFALDAVDGHVARMVGQESGFGGVL DMVTDRTATAGLVMINLLVEIEDWKKFGWISLCMLDISSHWFHCIAAAGR HHKSAEATAGKNFILQWYYACKPLFFACCTGQEFFYLLNFIKEKGVTFGR VAAPEWLHPEMKVHFPIDILESLWWITMVLAGIKQVVNVAQLASAAVSLA EEDAEKDMKKKGKQGEKIKMEVEVEREGQKRGGTAHFFPASGKKRSSNNN NNNHNNNNNNNNNNNKNKKNDNDDDDDDNNDNDDNNDNCEAVFPPTHQ* back to topmRNA from alignment at chr4:1247212..1248721- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp|location=Sequence derived from alignment at chr4:1247212..1248721- (Nannochloropsis oceanica) ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG
CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC
GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG
AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA
AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT
GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT
GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA
AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG
GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG
GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT
GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA
TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG
CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG
GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT
TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT
GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT
CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA
AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG
GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA
GTAAGGAGGGAGGGAGGGAGTAAGGAGAGACGAGGATGGACCTATGGGGC
ACGGGAGCACTTGAGAGATGATTTGGAAGGTGATGACGGAGAGAGGAAAG
TAGGGGAAGAAGGTTACAAAGTAGGAGAGGGGCTACGTCTTCTACAGGAT
AAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGACAG
CACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGGTGACTAGCGACCATT
CGTGGGGCTGCTAGCCGCCGCTTCTCGCGGTTTCCTCAACAATAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAG
CAGCAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACA
ACAACAACAAGAACAAGAAGAACGATAATGACGACGACGACGATGACAAC
AACGACAACGATGACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGAC
GCATCAATGA back to topCoding sequence (CDS) from alignment at chr4:1247212..1248721- >NO04G04580.1 ID=NO04G04580.1|Name=NO04G04580.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr4:1247212..1248721- (Nannochloropsis oceanica) ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG CACCATCAACGACGACAGCACCGACGTTGCCACTACTACTATCAAGCCCC GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG AAGACTCCCAGCACAACCATCACGAGCCCCAGCAGCATTGCCAGCAGCAA AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCGTGCGACAAGCAAGT GGTCCATCTTCTTCTACCTCCCCAATCTGATCGGGTACCTGCGTGTGATT GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGTGTGACATTCGGGCGT GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGAA GATAAAGATGGAGGTGGAGGTGGAGAGAGAGGGGCAGAAACGAGGAGGGA CAGCACATTTTTTTCCGGCATCAGGCAAGAAGCGCAGCAGCAACAACAAC AACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAGAA CAAGAAGAACGATAATGACGACGACGACGATGACAACAACGACAACGATG ACAACAACGACAACTGTGAGGCCGTTTTCCCCCCGACGCATCAATGA back to top
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