NO04G04570.1, NO04G04570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04570.1
Unique NameNO04G04570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr4:1244970..1246948 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1244970..1246948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04570.1 vs.
Match: EWM28840.1 (glutathione transferase [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 6.600e-61
Identity = 114/157 (72.61%), Postives = 127/157 (80.89%), Query Frame = 0 
Query:  137 YPSINNGVYRCGFATTQGGYEDGVEDVFEGLERVEQILRKQRFLAGSVLTEADVRLFPTIIRFDAVYSTLFKCTRKRIGDYPNLSMWLREVYQLPGVRQTVDLPGLIRSYYVQLFPLNPSGICPVGPTEADLRLLAPHDRAEKF--GGGGEDIFVYK 292
            YP INNGVYRCGFAT+Q  Y+  V DVF GLE VE IL  QRFLAG VLTEADVRLFPT+IRFDAVY++LFKC  KRI DYPNL+ W+REVYQ+PGVR TVD+P LIRSY+VQLFPLNPSGICP GPTE DL++L  HDR E+F   GGG  IF  K
Sbjct:  271 YPLINNGVYRCGFATSQAAYDRSVRDVFRGLESVEAILTDQRFLAGDVLTEADVRLFPTVIRFDAVYASLFKCAGKRIADYPNLTQWMREVYQIPGVRTTVDIPALIRSYFVQLFPLNPSGICPQGPTEEDLKVLERHDREERFVKAGGGGSIFATK 427
The following BLAST results are available for this feature:
BLAST of NO04G04570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28840.16.600e-6172.61glutathione transferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04570NO04G04570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04570.1NO04G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04570.1.cds1NO04G04570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04570.1.cds2NO04G04570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04570.1.cds3NO04G04570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04570.1.cds4NO04G04570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04570.1.cds5NO04G04570.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04570.1.cds6NO04G04570.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04570.1 ID=NO04G04570.1|Name=NO04G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGCATGTGTGCTGTGCGCGCTTTCCCGGCTACCCGCCTCCCCTCATTTT
AACAAGAGACAGAGCGAGCCATGATCATCCGCCTCCCCCTCCTCCTGCCT
CCCCTCCTTCTTTTCGTTCTCCCCCTCCTCTTCCAGTCTACCACCGCCTT
CATTGCCACTTCCTCCCTCCGACCGCGGCTCCCCCCCTCCACCTCTCCTC
CGCCTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCCCCCTCTTCCTACAAAGGTCTCCGCCTTCTTGAGTGGACC
AATGCCCTTCTTCCTCAAAAAACCCTTGTCAAAACCGCGCGATTCGGATG
GAATACGATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAG
ACGGGAGCTACCCCAGTATTAACAATGGCGTCTATCGGTGCGGGTTTGCC
ACCACCCAAGGAGGATACGAGGATGGGGTAGAGGACGTGTTTGAGGGCTT
GGAGCGCGTCGAGCAGATCTTGAGGAAGCAGCGGTTTCTGGCGGGAAGTG
TCCTGACGGAGGCGGATGTGCGTCTCTTTCCCACCATCATCCGGTTTGAT
GCCGTCTACTCCACCTTGTTCAAATGCACGAGGAAAAGGATAGGGGATTA
CCCGAATCTGTCCATGTGGTTGAGGGAGGTGTACCAGCTGCCGGGGGTGA
GACAGACGGTGGACTTGCCCGGGTTGATCCGAAGCTATTATGTGCAGCTT
TTCCCGTTAAACCCATCGGGTATCTGCCCCGTTGGCCCCACAGAAGCGGA
TTTGCGGCTTCTGGCACCACATGATCGGGCAGAGAAGTTTGGAGGAGGAG
GAGAAGATATTTTTGTCTATAAAGAATGA
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protein sequence of NO04G04570.1

>NO04G04570.1-protein ID=NO04G04570.1-protein|Name=NO04G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MHVCCARFPGYPPPLILTRDRASHDHPPPPPPASPPSFRSPPPLPVYHRL
HCHFLPPTAAPPLHLSSASPSPSPPPPPPPPPPPPPPPSSYKGLRLLEWT
NALLPQKTLVKTARFGWNTMWKTLMTELAPQSKDGSYPSINNGVYRCGFA
TTQGGYEDGVEDVFEGLERVEQILRKQRFLAGSVLTEADVRLFPTIIRFD
AVYSTLFKCTRKRIGDYPNLSMWLREVYQLPGVRQTVDLPGLIRSYYVQL
FPLNPSGICPVGPTEADLRLLAPHDRAEKFGGGGEDIFVYKE*
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mRNA from alignment at chr4:1244970..1246948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04570.1 ID=NO04G04570.1|Name=NO04G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at chr4:1244970..1246948+ (Nannochloropsis oceanica)
ATGCATGTGTGCTGTGCGCGCTTTCCCGGCTACCCGCCTCCCCTCATTTT
AACAAGAGGTCAGACAGCACTCACACAGCATTGTTACATGCTCATTTCCT
CATCTTCGTTCCTTATTTCCTTATTTCCTTATTTCTTTCATAGGCTTACC
TTTGCTAATTCTTTCCTCCCTCCCTCCCTCCCCCCAGACAGAGCGAGCCA
TGATCATCCGCCTCCCCCTCCTCCTGCCTCCCCTCCTTCTTTTCGTTCTC
CCCCTCCTCTTCCAGTCTACCACCGCCTTCATTGCCACTTCCTCCCTCCG
ACCGCGGCTCCCCCCCTCCACCTCTCCTCCGCCTCTCCTTCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCTCTTCCT
ACAAAGGTCTCCGCCTTCTTGAGTGGACCAATGCCCTTCTTCCTCAAAAA
ACCCTTGTCAAAACCGCGCGATTCGGATGGAATACGATGTGGAAGGTGCG
CCCATCATCCCTCCCTCTTTCCCTCCCTCCCTCCCTTTCTGTCTCTTTTC
TCACTATCTTCCTCTGCACAAGCTCTGGCCCCTTACCTCTCACCTCCCCC
CTCCCTCCCTCTCTCTCTCCTCTAGACCCTCATGACTGAGCTTGCACCAC
AGAGCAAAGACGGGAGCTACGTTCGTCCCTCCTATACCTTCAACGGTCAA
CTCGGCTCCCCCCCCTTCCCGCTTGAAGAAGGTCGCTATCACGTCTATGT
CGGAAATGCCTGCCCCTGGTGCCATCGTCTCACCCTCGCACACACCCTCA
GGGCATTAAACCAAAAACAAATTTCTTATTCATATGCCATCGACGACCCG
GAAAAGGCCTCACGGGGAGGGTGGGCTTTCGAACGTGAAGGAGGGAGGGA
AGCAGGGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGG
ATCGGGTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCT
CCCGGGTACACGGGCCGTTGCACCGCACCTGTCTTGATAGACAAGAGAAC
CAAACGTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACC
TCTTCCTCCCCCCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTT
CCCTCCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATT
AACAATGGCGTCTATCGGTGCGGGTTTGCCACCACCCAAGGAGGATACGA
GGATGGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCT
TGAGGAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTA
AGAGGGAGGAAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAAGATGAT
GTTACATGTGGGTCAGGATAGGATATTACACTGATAATCCACTCCCATTC
ATCCCTCCTTCCCTCCCTCCCTTCCTAGGTGCGTCTCTTTCCCACCATCA
TCCGGTTTGATGCCGTCTACTCCACCTTGTTCAAATGCACGAGGAAAAGG
ATAGGGGATTACCCGAATCTGTCCATGTGGTTGAGGGAGGTGTACCAGCT
GCCGGGGGTGAGACAGACGGTGGACTTGCCCGGGTTGATCCGAAGCTATT
ATGTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGAG
GATGGGAAGGGAGGGATGGACGGATGGAGGGAAGGGTATTTGGGAAGTAA
GAGGTCACAAATAAGTAACAATAGAATAGAATGGTTCACACAATCACACC
TTCGTTCTCTCCCTTCCCCCCTTCCCTTCCTCCCTCTTTTTCTGCAGCTT
TTCCCGTTAAACCCATCGGGTATCTGCCCCGTTGGCCCCACAGAAGCGGA
TTTGCGGCTTCTGGCACCACATGATCGGGCAGAGAAGTTTGGAGGAGGAG
GAGAAGATATTTTTGTCTATAAAGAATGA
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Coding sequence (CDS) from alignment at chr4:1244970..1246948+

>NO04G04570.1 ID=NO04G04570.1|Name=NO04G04570.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr4:1244970..1246948+ (Nannochloropsis oceanica)
ATGCATGTGTGCTGTGCGCGCTTTCCCGGCTACCCGCCTCCCCTCATTTT
AACAAGAGACAGAGCGAGCCATGATCATCCGCCTCCCCCTCCTCCTGCCT
CCCCTCCTTCTTTTCGTTCTCCCCCTCCTCTTCCAGTCTACCACCGCCTT
CATTGCCACTTCCTCCCTCCGACCGCGGCTCCCCCCCTCCACCTCTCCTC
CGCCTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCCCCCTCTTCCTACAAAGGTCTCCGCCTTCTTGAGTGGACC
AATGCCCTTCTTCCTCAAAAAACCCTTGTCAAAACCGCGCGATTCGGATG
GAATACGATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAG
ACGGGAGCTACCCCAGTATTAACAATGGCGTCTATCGGTGCGGGTTTGCC
ACCACCCAAGGAGGATACGAGGATGGGGTAGAGGACGTGTTTGAGGGCTT
GGAGCGCGTCGAGCAGATCTTGAGGAAGCAGCGGTTTCTGGCGGGAAGTG
TCCTGACGGAGGCGGATGTGCGTCTCTTTCCCACCATCATCCGGTTTGAT
GCCGTCTACTCCACCTTGTTCAAATGCACGAGGAAAAGGATAGGGGATTA
CCCGAATCTGTCCATGTGGTTGAGGGAGGTGTACCAGCTGCCGGGGGTGA
GACAGACGGTGGACTTGCCCGGGTTGATCCGAAGCTATTATGTGCAGCTT
TTCCCGTTAAACCCATCGGGTATCTGCCCCGTTGGCCCCACAGAAGCGGA
TTTGCGGCTTCTGGCACCACATGATCGGGCAGAGAAGTTTGGAGGAGGAG
GAGAAGATATTTTTGTCTATAAAGAATGA
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Synonyms
Publications