NO04G04550.1, NO04G04550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04550.1
Unique NameNO04G04550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr4:1241403..1242968 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1241403..1242968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04550.1 vs.
Match: EWM28848.1 (cysteine proteinase [Nannochloropsis gaditana])

HSP 1 Score: 292.0 bits (746), Expect = 1.700e-75
Identity = 150/224 (66.96%), Postives = 174/224 (77.68%), Query Frame = 0 
Query:    6 SAILLSCLFAAASAAITTATTEEQRLQQHKHKHRRGWVLHGHEVAEEEWSRFKRYFRKVYFSSAEESYRFSVFRSSLAQAKLRNAHNVAAGGEHVFGVTRFSDETQEEFDRRYKGRKSHGKGVRKGVAIRRPLAWTSARMEREGEEEGGKEGGGPVQKRPAMVDWVEAGATTSVANQGQCGSCWAFSATSQIESAFIMDGNAPWRLSVQQVTSCTANGFGCGGG 230
            + +L   +   +S A +       ++++HK +HRRGWVL GHE A EEWSRFKRYFRKVY S +EE +RF VF SSLA+A++RNA NVAAGGEHVFGVTRFSDET EEF+RRYKGRK HG+GV  G  +RRPLA+TSA M REG+     EGG     RP  VDWV AGATTS+ NQGQCGSCWAFSATSQIESAFI+ G+APWRLSVQQVTSCT+ GFGCGGG
Sbjct:   11 TVLLFVTITVTSSVAESDPAPAHDQVRKHK-RHRRGWVLLGHETAAEEWSRFKRYFRKVYHSPSEEEHRFHVFASSLAEARVRNAQNVAAGGEHVFGVTRFSDETPEEFNRRYKGRKGHGRGVVSGAEVRRPLAYTSALMGREGQ-----EGGSVEVSRPPQVDWVAAGATTSIGNQGQCGSCWAFSATSQIESAFILAGHAPWRLSVQQVTSCTSGGFGCGGG 228
The following BLAST results are available for this feature:
BLAST of NO04G04550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28848.11.700e-7566.96cysteine proteinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04550NO04G04550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04550.1NO04G04550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04550.1.cds1NO04G04550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04550.1.cds2NO04G04550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04550.1.cds3NO04G04550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04550.1.cds4NO04G04550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04550.1 ID=NO04G04550.1|Name=NO04G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCTGC
GAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCAGC
ACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGGCG
GAAGAGGAATGGTCTCGATTCAAGAGGTACTTCCGAAAAGTCTACTTCTC
CTCCGCGGAGGAATCATACCGCTTCTCTGTCTTCCGATCCTCCCTAGCAC
AAGCCAAGCTGCGCAATGCCCATAACGTGGCAGCGGGCGGCGAACACGTG
TTTGGTGTCACCCGTTTCTCCGACGAAACGCAGGAGGAGTTCGACCGGCG
GTACAAGGGGAGAAAGAGCCATGGGAAGGGAGTGAGGAAGGGGGTGGCGA
TTCGCAGGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGAGGGCGAG
GAGGAGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCAAT
GGTGGACTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAATCAAGGAC
AGTGCGGGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGAGTCTGCC
TTCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTCAC
CTCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGATACGATCGAAGC
CTACGAGCAGCTGCTAG
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protein sequence of NO04G04550.1

>NO04G04550.1-protein ID=NO04G04550.1-protein|Name=NO04G04550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MLLLRSAILLSCLFAAASAAITTATTEEQRLQQHKHKHRRGWVLHGHEVA
EEEWSRFKRYFRKVYFSSAEESYRFSVFRSSLAQAKLRNAHNVAAGGEHV
FGVTRFSDETQEEFDRRYKGRKSHGKGVRKGVAIRRPLAWTSARMEREGE
EEGGKEGGGPVQKRPAMVDWVEAGATTSVANQGQCGSCWAFSATSQIESA
FIMDGNAPWRLSVQQVTSCTANGFGCGGGIRSKPTSSC*
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mRNA from alignment at chr4:1241403..1242968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04550.1 ID=NO04G04550.1|Name=NO04G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at chr4:1241403..1242968+ (Nannochloropsis oceanica)
ATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCTGC
GAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCAGC
ACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGGCG
GAAGAGGAATGGTCTCGATTCAAGAGGTACGCACGCGGAAAGGGGTTGCT
TCGACGTTAACCTTGATAATACCCGTGCGTCGTGTCCCCTCGTGTCTTTC
GTTTACCATGAGCGTGGAAATTGGCTTCAGGCCTGCATGTGTGCAAGCCC
CCTATTTCCTTTCTGTCTCCTTTTGTATTCCCTTTCCCTCCCTTAGCCTC
CCCTCAGACCGTCTCATCTCTTCCTGTTCCGCTTGCCCATGCCCGTCTTA
ACTATCCTTGGGTCTTCCACAAAGTCAGATAAATCCCTATTAAAAAGCGT
GCAGGCAGTTCTTCTTCGTTCTTCCCTCTTTCATGCCCGTGTTCTACAAA
ATAACTCCACCACGCACCACTTGTAAAACTCACCTCCCTCATCCTCCCAC
CCACCCACCCACCCACCCACCCTTTCTCCCTCCTTCCCTCCCTCCCTCCC
TCCCTCCCAACCATCTTAAGGTACTTCCGAAAAGTCTACTTCTCCTCCGC
GGAGGAATCATACCGCTTCTCTGTCTTCCGATCCTCCCTAGCACAAGCCA
AGCTGCGCAATGCCCATAACGTGGCAGCGGGCGGCGAACACGTGTTTGGT
GTCACCCGTTTCTCCGACGAAACGCAGGAGGAGTTCGACCGGCGGTACAA
GGGGAGAAAGAGCCATGGGAAGGGAGTGAGGAAGGGGGTGGCGATTCGCA
GGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGAGGGCGAGGAGGAG
GGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCAATGGTGGA
CTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAATCAAGGACAGTGCG
GGGTAAGTGTATGCCTCTCTGCTTTCCCTCCTTCTTCCCTCATCCTTCTT
AGGTTTAAATTAGCTTGTGACGTGGGTGTAGGGGCTGGGCGTTTTTTGTT
TTTTATTTTTAAAACTTTTGTTAATTGCGTTATGATTGGCCGCCGTGCTT
CTTTCACTCTCATCGACTTGCCCTCCCTCTCTCCATCCCTCCTTCCCACT
CTCCTAGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGAGTCTGCCT
TCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTCACC
TCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGATACGATCGAAGCC
TACGAGCAGGTGCGTAGGTCAGGAAGACGGAGGGAGGGAGAGAAGGGGAG
GAAGGGGGAGGTCCATGCATATATGCGCGTGTTAGGGGGGGAAAGCGAGT
AAGGGGAGGAAGAGAGGGAGGGAGGGAGGGAGGGAGGGTTGGTTTGTTTT
TTCCCTTCTAACATTTTCGTCCACTCCCCCTCCCTCCCTCCCTCCTTCCT
TTCCTCCAGCTGCTAG
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Coding sequence (CDS) from alignment at chr4:1241403..1242968+

>NO04G04550.1 ID=NO04G04550.1|Name=NO04G04550.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr4:1241403..1242968+ (Nannochloropsis oceanica)
ATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCTGC
GAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCAGC
ACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGGCG
GAAGAGGAATGGTCTCGATTCAAGAGGTACTTCCGAAAAGTCTACTTCTC
CTCCGCGGAGGAATCATACCGCTTCTCTGTCTTCCGATCCTCCCTAGCAC
AAGCCAAGCTGCGCAATGCCCATAACGTGGCAGCGGGCGGCGAACACGTG
TTTGGTGTCACCCGTTTCTCCGACGAAACGCAGGAGGAGTTCGACCGGCG
GTACAAGGGGAGAAAGAGCCATGGGAAGGGAGTGAGGAAGGGGGTGGCGA
TTCGCAGGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGAGGGCGAG
GAGGAGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCAAT
GGTGGACTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAATCAAGGAC
AGTGCGGGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGAGTCTGCC
TTCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTCAC
CTCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGATACGATCGAAGC
CTACGAGCAGCTGCTAG
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Synonyms
Publications