NO04G04480.1, NO04G04480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04480.1
Unique Name	NO04G04480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3111
Alignment location	chr4:1217319..1221104 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1217319..1221104 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G04480.1 vs.
Match: EWM28830.1 (epimerase 4-reductase [Nannochloropsis gaditana])

HSP 1 Score: 597.0 bits (1538), Expect = 3.200e-167
Identity = 283/310 (91.29%), Postives = 297/310 (95.81%), Query Frame = 0

Query:    1 MSEEKYLIFGKNGWIGGKLIDLLKQQGKTVVLGQSRLENREALFAELDDVKPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAEGCHLKGIHMTLYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSYKNVCILRVRMPISDDLNPRNFVTKIVSYDRVVDVPNSMTVLTDLLPISLIMSQRKLTGIYNFTNPGAISHNQILTLYKKHVDPSYTWQNFTIEEQNKILAAKRSNNELDTTKFCAALPDIQIPDIHAACEGVFKRMKVNLEAEGVWPDKLPKRTNHLAPPSS 311
            M+EEKYLIFGKNGWIGGKLI+LL+ QGKTVVL Q+RLENRE+LFAELD VKPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAE CHLKGIHMTLYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSY NVCILRVRMPISDDLN RNFVTKIV YD+VV+VPNSMTVLTDLLPISL+M+ RKLTGIYNFTNPGAISHNQIL LYKKHVDPSYTW+NFTI+EQNKILAAKRSNNELDTTKFCAALPD+ IPDIH ACE VF+RMKVNLEAEG+WPDKLPKRTN LAPPSS
Sbjct:    1 MAEEKYLIFGKNGWIGGKLIELLQAQGKTVVLAQTRLENRESLFAELDAVKPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAEACHLKGIHMTLYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSYNNVCILRVRMPISDDLNSRNFVTKIVKYDKVVNVPNSMTVLTDLLPISLLMAARKLTGIYNFTNPGAISHNQILALYKKHVDPSYTWENFTIDEQNKILAAKRSNNELDTTKFCAALPDVHIPDIHEACEKVFQRMKVNLEAEGIWPDKLPKRTNRLAPPSS 310

The following BLAST results are available for this feature:

BLAST of NO04G04480.1 vs.

BLAST of NO04G04480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28830.1	3.200e-167	91.29	epimerase 4-reductase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G04480	NO04G04480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04480.1	NO04G04480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04480.1.cds1	NO04G04480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04480.1.cds2	NO04G04480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04480.1.cds3	NO04G04480.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04480.1.cds4	NO04G04480.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04480.1.cds5	NO04G04480.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1217319..1221104-
coding sequence from alignment at chr4:1217319..1221104-

mRNA sequence

>NO04G04480.1 ID=NO04G04480.1|Name=NO04G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3111bp
TAAAAAATCTAGAACAAAGCACCATAAGGCACCCAAAATGATGCGGCTAT
GTGCGAAAAAGCTGCGCACAGGGAAATGGAAGAAACGGCAACCTGCGAAG
CGAAGGGAGAAGACGTTTGATGCCCTCCGAGTGTCCAGCGCACGCGAACG
ACTCTTCGGGGACTAGCCGTTGAGAGCAAAGCATGAGTAAGACGTAGTTC
CTTAAGTTAGCGTGTGCAGCGCACCTTTGCCGACACCTTTTCTTGGTGTC
ACGTTGGAGCCATCCCAGAGCACCAGCGTCATCGCTCACTTTCGCTCTCA
TTCAAAAAGAAACTGCATCACCAGGCCCTGACTCCTTCCTCTTCACACCA
CCCACCATGTCCACACAGACACACGCCCACTTCGTCTACTGCTAAGCGTT
AAGCACTTATGTCGGAAGAGAAGTACTTGATCTTCGGGAAGAACGGATGG
ATCGGGGGAAAGCTCATCGACCTGCTTAAGCAGCAAGGCAAAACGGTGGT
GTTGGGCCAGTCCCGCCTCGAGAACCGCGAGGCGCTCTTCGCAGAGCTGG
ACGACGTTAAGCCGACCCACGTCTTGGACGCAGCAGGCGTGACGGGCCGC
CCGAATATTGATTGGTGCGAGACGCACCAGGTGGAAACGATTCGTACGAA
TGTCATAGGAACGTTGAATCTGGCGGAGGGATGCCATCTGAAGGGGATTC
ACATGACGTTGTATGCCACGGGATGTATTTTTGAGTACGACGAGAAGCAC
CCTATCGGCGGCCCGGGTTTCACGGAGGAGGACTCGCCTAACTTCTTCGG
GTCATTCTATAGTAAGACTAAGGCCTATATGGAGGACATGTTGAAGAGCT
ACAAGAACGTGTGCATCTTGCGGGTGCGCATGCCCATCTCTGATGACCTC
AATCCCCGTAATTTTGTCACCAAAATTGTGAGCTACGACCGCGTGGTGGA
CGTACCTAACTCCATGACGGTACTGACGGACCTCTTGCCAATCTCCTTAA
TTATGAGCCAGCGCAAGCTCACAGGCATCTACAATTTCACCAACCCCGGC
GCCATCTCTCACAACCAAATTCTGACCCTGTACAAGAAGCATGTCGACCC
GTCCTACACCTGGCAGAATTTCACGATCGAGGAACAAAACAAGATTCTTG
CCGCCAAGCGCTCCAACAATGAGCTGGACACGACCAAGTTCTGTGCCGCG
CTTCCCGATATTCAAATTCCAGATATCCATGCAGCCTGCGAAGGGGTCTT
CAAGCGCATGAAGGTCAATTTGGAGGCGGAGGGCGTGTGGCCCGATAAGC
TGCCTAAACGCACCAACCACCTGGCACCCCCCTCCTCCTAAGCAAGCGTC
TTTATCTCTCTTGCTACCCTCATTCCATTCCTTCTTGATTCCTTCCCCTC
CGCGCTCCCCTTGTGGGAAAGAGAGGTATGAGGAGGAGGAAGGGAGGGAT
GGAGGGAGACTCACAATGTATGCTATTTACTTGATGTACTTTGGAAAGTG
TTGAAGCGTATCTTATGGTAGGACGAATGAAATGGAGGCGAATGCGAGGA
TGGAAGGAGGAGAGGGAAGCAAAAGTAGAAGAAGTAGAAGCAAAAAAGGA
AGAAGAAAAAGAATACAGAAGAGGAAGATGAGGAGGAAGAGGAGGTGTCG
TCAGGGACCTGACCCCTCACGCCAAGCCTTCAAGTCGAATAAAACAGCGA
TCAATTGAAAGATGATATAAGACAAACAGCAGAGGATATTGAATTAGACT
CCAATCCCAACGTGCCCTTGCATTCTCTGGTTACCCCACGGAAAGAATCC
AACCCCCCCGACAAGAACGAAAAAGAACCACGAACACGATGGGAGCACGA
AAAGCAGCCGAAGCAATTGCAGCTGTAGCACCTACAGGATCGCGAAAGGA
TCGACATAAGCTGTACTAAATTTGATTTCAGGTTCCTGATCTCATCCATT
TTTCCTTTCTGTTCTCGCCAGAACACGTAAAAGCTGCTGCTTCCACTCCC
AGTGGTAGAGGGAGGCCAGTGCAGTCATGTGCCTGTTGCGTATCATTACC
AACCATGCGCATCCACCTTCTTTACAATACCGTGTCTTCATCATGAAGGA
CATACATCCACCCTATCCCTCGACAGAGAGGCTCCATGTCTTCATCCTGA
ACCCCCCCCCTTTAAACATTAAAGCTCTCCCCACACCCACACGAGCCCTT
CGCGTTTGGATTGTGAAATGTAAACTCTCTCGACAGCTCCGTCTCTTCAA
AGTCCATTCTCGTGCCGACCACGTGCATTAATGCAGAGGGCTCCACGAAC
ACAGTCACCCCTCCCACAGTCACCTCCTCGTCAAATTTCGGCCGGGTCTC
GGTGTAGTTCATCGTGTAAGACAACCCATTGCAACCCCTCTTTTTCGTGC
CCAGACGCACCCCCACCACGCTGGGGCCTTTAGAGGCGAGGAGCTCTTTG
ATACGAGCGACGGCCCGATCCGTGAGCTGGAGGGGGGCTGCGCGGGTGCG
ACGGGTAGGAGGGTACGAGGGGGAGGAGTTGGGGGGAGTAGGGCCGGTCG
TGCTGCTGTTGCTATTGTCGTCATAACGAAGGGATTGAGAGGATGAAGAA
GCGGTCGCGGTGGCAGTGGCGGTGTTTGTTCTGGGTTGCGGGCCGGTGGA
AGATGGGAATGATGAAGGTGCTTGGTGCTCATGTTGCTGGTGCTGCTGGC
TCGCCCCAGACATGTTGTCGTGGCTGATGACGGCGGCCACGGTGGACGCC
CAAGCTCTTTGCTGCTGCCCTACTATTGTCACCGCTGGTGTTGTCGTGGG
TGCTCGGGCCATTGCCAAGGAGGAGGCGGCAGCGGACGTTGCTGCTAGAG
AGGCCATTCCTACAGCGCTCGCGCACGCAAGAGACGAAGAGATGGACGAA
ACTCCCCGTCCTCCTCTCATGCCCTGCGTTATCACCCTCTGGATCAGCGC
CGCGGCGGTGCGGGACGTGGACTTAGCCATGGCGTGTGAAGCGGTGCGGT
GAGGTGGTCTTGGGTATGCCCGTAGCTAGCTGCTAGTTGGACGAGACGAG
ATTGTCTGCACTCCTGGTGATATCAGCAAGCGACTCTGGGGCTGCCTGTC
GCGGGGGCTAT

protein sequence of NO04G04480.1

>NO04G04480.1-protein ID=NO04G04480.1-protein|Name=NO04G04480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MSEEKYLIFGKNGWIGGKLIDLLKQQGKTVVLGQSRLENREALFAELDDV
KPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAEGCHLKGIHMT
LYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSYKN
VCILRVRMPISDDLNPRNFVTKIVSYDRVVDVPNSMTVLTDLLPISLIMS
QRKLTGIYNFTNPGAISHNQILTLYKKHVDPSYTWQNFTIEEQNKILAAK
RSNNELDTTKFCAALPDIQIPDIHAACEGVFKRMKVNLEAEGVWPDKLPK
RTNHLAPPSS*

mRNA from alignment at chr4:1217319..1221104-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G04480.1 ID=NO04G04480.1|Name=NO04G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3786bp|location=Sequence derived from alignment at chr4:1217319..1221104- (Nannochloropsis oceanica)
TAAAAAATCTAGAACAAAGCACCATAAGGCACCCAAAATGATGCGGCTAT
GTGCGAAAAAGCTGCGCACAGGGAAATGGAAGAAACGGCAACCTGCGAAG
CGAAGGGAGAAGACGTTTGATGCCCTCCGAGTGTCCAGCGCACGCGAACG
ACTCTTCGGGGACTAGCCGTTGAGAGCAAAGCATGAGTAAGACGTAGTTC
CTTAAGTTAGCGTGTGCAGCGCACCTTTGCCGACACCTTTTCTTGGTGTC
ACGTTGGAGCCATCCCAGAGCACCAGCGTCATCGCTCACTTTCGCTCTCA
TTCAAAAAGAAACTGCATCACCAGGCCCTGACTCCTTCCTCTTCACACCA
CCCACCATGTCCACACAGACACACGCCCACTTCGTCTACTGCTAAGCGTT
AAGCACTTATGTCGGAAGAGGTATGTGCGGGATGTGGTATTTTGGGTCAG
GTTCTGTGGGCCGTGTCCCTCTCATCTTGATTTGTCCCATCTTCTTCATC
CACGCGAGTAACTACTATCACAACGCACTCGCTCACTCTCTGCCCATACC
CCACGCCGAGCAGAAGTACTTGATCTTCGGGAAGAACGGATGGATCGGGG
GAAAGCTCATCGACCTGCTTAAGCAGCAAGGCAAAACGGTGGTGTTGGGC
CAGTCCCGCCTCGAGAACCGCGAGGCGCTCTTCGCAGAGCTGGACGACGT
TAAGCCGACCCACGTCTTGGACGCAGCAGGCGTGACGGGCCGCCCGAATA
TTGATTGGTGCGAGACGCACCAGGTGGAAACGATTCGTACGAATGTCATA
GGAACGTTGAATCTGGCGGAGGGATGCCATCTGAAGGGGATTCACATGAC
GTTGTATGCCACGGGATGTATTTTTGAGTACGACGAGAAGCACCCTATCG
GCGGCCCGGGTTTCACGGAGGAGGACTCGCCTAACTTCTTCGGGTCATTC
TATAGTAAGACTAAGGCCTATATGGAGGACATGTTGAAGAGCTACAAGAA
CGTGTGCATCTTGCGGGTGCGCATGCCCATCTCTGATGACCTCAATCCCC
GTAATTTTGTCACCAAAATTGTGAGCTACGACCGCGTGGTGGACGTACCT
AACTCCATGACGGTACTGACGGACCTCTTGCCAATCTCCTTAATTATGAG
CCAGCGCAAGCTCACAGGTACGTGGGGAGGGAGGAAGGGAGGGAAGGAGG
GAGGGATAGAGGGAAGGAGGGGACTTGGAAGATGTGAGGGTGTATGGCTC
ACTCCCCCTCTCTCCCTCCCTCTCTTCCTCTCTCTCAAGGCATCTACAAT
TTCACCAACCCCGGCGCCATCTCTCACAACCAAATTCTGACCCTGTACAA
GAAGCATGTCGACCCGTCCTACACCTGGCAGAATTTCACGGTACGTTTCT
CCCCCCCTCCCCCTCTCCCTCCCTCCCTCCCCCCCCTCGGCTTTTACTTC
TCCTGACCCCTCCCTCCTCCCTCTTCCTCCCCTCCCTCCTTCCCCTCCTC
CTTCAGATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCCAACAA
TGAGCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCAAATTC
CAGATATCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTCCCT
TCCTCCCTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGACCGCATGA
CCAAGTATTGTGCCATGCTACCCGGGTATAAAGGTTCTTGACAGTCATCT
AAGAGCCGTACACCGGGACAAAGGAGGGCAGAAACCAGGGAGGGAATGAG
GGGAGAAGGAGCAGTAGAAAGCATATGCTATTTTAATCTCCCATTGCAAC
AAGCCCTGTGATTGTCACTCCTCACGACCCTCCCTCCCTCCCTCTCGCCC
TCTCTCCCTCTCTCCGTCAGGTCTTCAAGCGCATGAAGGTCAATTTGGAG
GCGGAGGGCGTGTGGCCCGATAAGCTGCCTAAACGCACCAACCACCTGGC
ACCCCCCTCCTCCTAAGCAAGCGTCTTTATCTCTCTTGCTACCCTCATTC
CATTCCTTCTTGATTCCTTCCCCTCCGCGCTCCCCTTGTGGGAAAGAGAG
GTATGAGGAGGAGGAAGGGAGGGATGGAGGGAGACTCACAATGTATGCTA
TTTACTTGATGTACTTTGGAAAGTGTTGAAGCGTATCTTATGGTAGGACG
AATGAAATGGAGGCGAATGCGAGGATGGAAGGAGGAGAGGGAAGCAAAAG
TAGAAGAAGTAGAAGCAAAAAAGGAAGAAGAAAAAGAATACAGAAGAGGA
AGATGAGGAGGAAGAGGAGGTGTCGTCAGGGACCTGACCCCTCACGCCAA
GCCTTCAAGTCGAATAAAACAGCGATCAATTGAAAGATGATATAAGACAA
ACAGCAGAGGATATTGAATTAGACTCCAATCCCAACGTGCCCTTGCATTC
TCTGGTTACCCCACGGAAAGAATCCAACCCCCCCGACAAGAACGAAAAAG
AACCACGAACACGATGGGAGCACGAAAAGCAGCCGAAGCAATTGCAGCTG
TAGCACCTACAGGATCGCGAAAGGATCGACATAAGCTGTACTAAATTTGA
TTTCAGGTTCCTGATCTCATCCATTTTTCCTTTCTGTTCTCGCCAGAACA
CGTAAAAGCTGCTGCTTCCACTCCCAGTGGTAGAGGGAGGCCAGTGCAGT
CATGTGCCTGTTGCGTATCATTACCAACCATGCGCATCCACCTTCTTTAC
AATACCGTGTCTTCATCATGAAGGACATACATCCACCCTATCCCTCGACA
GAGAGGCTCCATGTCTTCATCCTGAACCCCCCCCCTTTAAACATTAAAGC
TCTCCCCACACCCACACGAGCCCTTCGCGTTTGGATTGTGAAATGTAAAC
TCTCTCGACAGCTCCGTCTCTTCAAAGTCCATTCTCGTGCCGACCACGTG
CATTAATGCAGAGGGCTCCACGAACACAGTCACCCCTCCCACAGTCACCT
CCTCGTCAAATTTCGGCCGGGTCTCGGTGTAGTTCATCGTGTAAGACAAC
CCATTGCAACCCCTCTTTTTCGTGCCCAGACGCACCCCCACCACGCTGGG
GCCTTTAGAGGCGAGGAGCTCTTTGATACGAGCGACGGCCCGATCCGTGA
GCTGGAGGGGGGCTGCGCGGGTGCGACGGGTAGGAGGGTACGAGGGGGAG
GAGTTGGGGGGAGTAGGGCCGGTCGTGCTGCTGTTGCTATTGTCGTCATA
ACGAAGGGATTGAGAGGATGAAGAAGCGGTCGCGGTGGCAGTGGCGGTGT
TTGTTCTGGGTTGCGGGCCGGTGGAAGATGGGAATGATGAAGGTGCTTGG
TGCTCATGTTGCTGGTGCTGCTGGCTCGCCCCAGACATGTTGTCGTGGCT
GATGACGGCGGCCACGGTGGACGCCCAAGCTCTTTGCTGCTGCCCTACTA
TTGTCACCGCTGGTGTTGTCGTGGGTGCTCGGGCCATTGCCAAGGAGGAG
GCGGCAGCGGACGTTGCTGCTAGAGAGGCCATTCCTACAGCGCTCGCGCA
CGCAAGAGACGAAGAGATGGACGAAACTCCCCGTCCTCCTCTCATGCCCT
GCGTTATCACCCTCTGGATCAGCGCCGCGGCGGTGCGGGACGTGGACTTA
GCCATGGCGTGTGAAGCGGTGCGGTGAGGTGGTCTTGGGTATGCCCGTAG
CTAGCTGCTAGTTGGACGAGACGAGATTGTCTGCACTCCTGGTGATATCA
GCAAGCGACTCTGGGGCTGCCTGTCGCGGGGGCTAT

Coding sequence (CDS) from alignment at chr4:1217319..1221104-

>NO04G04480.1 ID=NO04G04480.1|Name=NO04G04480.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr4:1217319..1221104- (Nannochloropsis oceanica)
ATGTCGGAAGAGAAGTACTTGATCTTCGGGAAGAACGGATGGATCGGGGG
AAAGCTCATCGACCTGCTTAAGCAGCAAGGCAAAACGGTGGTGTTGGGCC
AGTCCCGCCTCGAGAACCGCGAGGCGCTCTTCGCAGAGCTGGACGACGTT
AAGCCGACCCACGTCTTGGACGCAGCAGGCGTGACGGGCCGCCCGAATAT
TGATTGGTGCGAGACGCACCAGGTGGAAACGATTCGTACGAATGTCATAG
GAACGTTGAATCTGGCGGAGGGATGCCATCTGAAGGGGATTCACATGACG
TTGTATGCCACGGGATGTATTTTTGAGTACGACGAGAAGCACCCTATCGG
CGGCCCGGGTTTCACGGAGGAGGACTCGCCTAACTTCTTCGGGTCATTCT
ATAGTAAGACTAAGGCCTATATGGAGGACATGTTGAAGAGCTACAAGAAC
GTGTGCATCTTGCGGGTGCGCATGCCCATCTCTGATGACCTCAATCCCCG
TAATTTTGTCACCAAAATTGTGAGCTACGACCGCGTGGTGGACGTACCTA
ACTCCATGACGGTACTGACGGACCTCTTGCCAATCTCCTTAATTATGAGC
CAGCGCAAGCTCACAGGCATCTACAATTTCACCAACCCCGGCGCCATCTC
TCACAACCAAATTCTGACCCTGTACAAGAAGCATGTCGACCCGTCCTACA
CCTGGCAGAATTTCACGATCGAGGAACAAAACAAGATTCTTGCCGCCAAG
CGCTCCAACAATGAGCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGA
TATTCAAATTCCAGATATCCATGCAGCCTGCGAAGGGGTCTTCAAGCGCA
TGAAGGTCAATTTGGAGGCGGAGGGCGTGTGGCCCGATAAGCTGCCTAAA
CGCACCAACCACCTGGCACCCCCCTCCTCCTAA

Synonyms

Publications