NO04G04470.1, NO04G04470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04470.1
Unique NameNO04G04470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1224
Alignment locationchr4:1214009..1216474 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1214009..1216474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G04470.1 vs.
Match: XP_005855227.1 (developmentally regulated g-protein 1 [Nannochloropsis gaditana CCMP526]; EKU21129.1 developmentally regulated g-protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 633.3 bits (1632), Expect = 5.400e-178
Identity = 316/334 (94.61%), Postives = 328/334 (98.20%), Query Frame = 0 
Query:    1 MGIVDRIKEIEEEMSRTQKNKATEHHLGALKARLAKLRSELLLETSSKGPGSSGTGFEVARSGDGRVALIGFPSVGKSSLLNTLTDTESQAAAYEFTTLTCIPGNIIYNDTKIQLLDLPGIIEGAAHGKGRGREVIAVARSSDLVLMVLDGGKEQVNNHRAILERELETVGLRLNKKPPNIYFKKKKDGGVKFNSTVPLTMLGPDPALTVGRILYEYKIHNCEMLIREDVSTDEVIDVIEGNRKYIRCLYAYNKIDTITIEDVDKLAREPDAIVISVRHKLNLERLLERMWDYMGLIRVYTKRRGCPPVFLEPLVLSSERRGITVEVACESISK 335
            MGIVDRIKEIEEEM+RTQKNKATEHHLGALKARLAKLRSELLLET SKGPG +GTGFEVARSGDGRVALIGFPSVGKSSLLNTLTDTESQAAAYEFTTLTCIPGNIIYNDTKIQLLDLPGIIEGAAHGKGRG+EVIAVARSSDLVLMVLDGGKEQVNNHRAILERELETVGLRLNKKPPNIYF+KKKDGGVKFNSTVPLT LGPDPALTVGRILYEYKIHNCEML+REDVSTD+VIDVIEGNRKY+RCLYAYNKIDTITIEDVD+LAREPDAIVISVRHKLNLERLLERMWDYMGLIRVYTKRRG PP F EPLV+SSERRG+TVEVACE+IS+
Sbjct:    1 MGIVDRIKEIEEEMARTQKNKATEHHLGALKARLAKLRSELLLETGSKGPGGAGTGFEVARSGDGRVALIGFPSVGKSSLLNTLTDTESQAAAYEFTTLTCIPGNIIYNDTKIQLLDLPGIIEGAAHGKGRGKEVIAVARSSDLVLMVLDGGKEQVNNHRAILERELETVGLRLNKKPPNIYFRKKKDGGVKFNSTVPLTQLGPDPALTVGRILYEYKIHNCEMLLREDVSTDQVIDVIEGNRKYVRCLYAYNKIDTITIEDVDRLAREPDAIVISVRHKLNLERLLERMWDYMGLIRVYTKRRGAPPEFKEPLVMSSERRGVTVEVACENISR 334
The following BLAST results are available for this feature:
BLAST of NO04G04470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855227.15.400e-17894.61developmentally regulated g-protein 1 [Nannochloro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04470NO04G04470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04470.1NO04G04470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04470.1.cds1NO04G04470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds2NO04G04470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds3NO04G04470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds4NO04G04470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds5NO04G04470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds6NO04G04470.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds7NO04G04470.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04470.1.cds8NO04G04470.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04470.1 ID=NO04G04470.1|Name=NO04G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
ATGGGGATCGTCGACCGCATCAAGGAGATTGAGGAAGAAATGTCGCGCAC
TCAAAAGAACAAGGCCACGGAGCATCACCTCGGCGCGCTCAAAGCCCGTT
TGGCCAAGCTTCGTTCAGAGCTGTTGCTGGAAACAAGTAGCAAGGGCCCC
GGCTCATCTGGAACAGGGTTTGAAGTGGCGCGGAGTGGGGACGGGCGGGT
TGCGCTGATCGGCTTTCCTTCAGTGGGGAAGTCGTCCTTATTAAACACCT
TGACGGATACGGAGTCTCAGGCTGCCGCATACGAATTTACGACCTTGACA
TGCATTCCGGGGAACATCATTTACAACGATACCAAGATCCAGCTGCTCGA
TCTGCCGGGAATCATCGAGGGCGCGGCCCATGGCAAAGGCCGAGGGCGCG
AAGTCATCGCCGTCGCCCGCTCCTCCGACTTAGTTTTGATGGTGCTGGAT
GGGGGGAAGGAGCAAGTGAACAACCATCGGGCCATCCTCGAGAGGGAGTT
GGAGACCGTGGGCCTGCGCTTGAATAAGAAGCCGCCCAACATTTACTTCA
AGAAGAAGAAAGATGGGGGAGTCAAGTTCAACTCGACGGTGCCACTGACC
ATGCTCGGCCCGGACCCCGCCTTAACGGTCGGTCGCATCTTGTACGAATA
TAAGATACATAACTGCGAGATGCTGATCCGGGAGGACGTCAGCACGGACG
AAGTCATCGACGTGATTGAAGGGAATCGGAAATACATCCGTTGTTTGTAT
GCCTACAACAAAATCGACACCATCACAATCGAGGACGTAGATAAGCTCGC
CCGGGAGCCTGATGCCATCGTCATCTCGGTCCGGCATAAGCTGAATTTGG
AGCGGCTGCTCGAACGAATGTGGGACTACATGGGCCTGATCCGCGTCTAC
ACAAAGCGACGGGGCTGTCCTCCCGTCTTCCTTGAGCCACTTGTCCTGTC
CTCGGAGCGGAGGGGCATTACAGTGGAGGTGGCGTGCGAGAGTATTTCAA
AAGAGCTTTTCGAAATCTTCAACTACGCCTTGGTGTGGGGCCGGAGCACC
AAATACGATCCCCAACGCTGCGGCTTGACCCACACTTTGGAAGATGAAGA
CGTTGTACAAGTTGTGGGCAAGACGGTAACGCAACAGAAGCGAGAAAAGG
GATACTCGAAGAAGGTGCAGGAGCATTGGGATGCCATCAAACTGAAGAGA
AAGAAGGCGGCGTTGCGATCGTAG
back to top

protein sequence of NO04G04470.1

>NO04G04470.1-protein ID=NO04G04470.1-protein|Name=NO04G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MGIVDRIKEIEEEMSRTQKNKATEHHLGALKARLAKLRSELLLETSSKGP
GSSGTGFEVARSGDGRVALIGFPSVGKSSLLNTLTDTESQAAAYEFTTLT
CIPGNIIYNDTKIQLLDLPGIIEGAAHGKGRGREVIAVARSSDLVLMVLD
GGKEQVNNHRAILERELETVGLRLNKKPPNIYFKKKKDGGVKFNSTVPLT
MLGPDPALTVGRILYEYKIHNCEMLIREDVSTDEVIDVIEGNRKYIRCLY
AYNKIDTITIEDVDKLAREPDAIVISVRHKLNLERLLERMWDYMGLIRVY
TKRRGCPPVFLEPLVLSSERRGITVEVACESISKELFEIFNYALVWGRST
KYDPQRCGLTHTLEDEDVVQVVGKTVTQQKREKGYSKKVQEHWDAIKLKR
KKAALRS*
back to top

mRNA from alignment at chr4:1214009..1216474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04470.1 ID=NO04G04470.1|Name=NO04G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp|location=Sequence derived from alignment at chr4:1214009..1216474+ (Nannochloropsis oceanica)
ATGGGGATCGTCGACCGCATCAAGGAGATTGAGGTAGGGATGGAGGGAGC
AAGGGAGCGAAGGTGAAAGAGTTGAAATTATGTCTTCTAGCTTGACGACC
AGAACGACGTCGCAAACATTTGCTAGTTGCTCAAGACTTTTGGTGTTGTT
TCCATTCTCGGACACTTTCGCACACACTCTCCCTCATTGTCTCCTCTCCT
CCCTCTCTCCCTCCCTCCCTCCTTCCCTCCTTTCCTCCTTTCCTCCCTCC
CCTTCCACAGGAAGAAATGTCGCGCACTCAAAAGAACAAGGCCACGGAGC
ATCACCTCGGCGCGCTCAAAGCCCGTTTGGCCAAGCTTCGTTCAGAGCTG
TTGCTGGAAACAAGTAGCAAGGGCCCCGGCTCATCTGGAACAGGGTTTGA
AGTGGCGCGGAGTGGGGACGGGCGGGTTGCGCTGATCGGCTTTCCTTCAG
TGGGGAAGTCGTCCTTATTAAACACCTTGACGGATACGGGTACGTGGGGG
AAGGGGGGATGGGCAAAGGAGGGAAAATAGTACACTTCTCCCTATATTTC
TGAAATGCAAGAGCAAAAGCCAAACATATTATGTTTTCATTATTTCCTTC
CCCCCCCCCTTCTCTCCCTCCCACGCTCCCTCCTTACCCACTTCAGAGTC
TCAGGCTGCCGCATACGAATTTACGACCTTGACATGCATTCCGGGGAACA
TCATTTACAACGATACCAAGATCCAGCTGCTCGATCTGCCGGGTGAGAAG
GGAGGGCGGGCGGGAGAGAGCAAGAGAAGAAGCTCCGGGATCAAGCGAGG
TCATTCATCTTTTTCCACAACACATGCAGGTGATACGATGCTAGATTTTT
GTTCTCACTCCCTCCTTTCTTTCCTCTGTCCGCTCACCAACGACAATTCC
GCAGGAATCATCGAGGGCGCGGCCCATGGCAAAGGCCGAGGGCGCGAAGT
CATCGCCGTCGCCCGCTCCTCCGACTTAGTTTTGATGGTGCTGGATGGGG
GGAAGGAGCAAGTGAACAACCATCGGGCCATCCTCGAGAGGGAGTTGGAG
ACCGTGGGCCTGCGCTTGAATAAGAAGCCGCCCAACATTTACTTCAAGAA
GAAGAAAGATGGGGGAGTCAAGTTCAACTCGACGGTACGTCTCATTCACC
CTTCGCTCATCCTCCCCATCGGCTAAATGGCCAACCATCGCAAAAAAAAC
ATTTTGATTTTATTTATAAATAAAGGTGAGAATAAAAAAATAAAATGAAA
ATTAAAACAAGTACTTACAAAATATTGACACTTACACAACCCATTTACCT
TTCTTCCCTCCCTCCCCCCCTCCCTCTCTCCCCCCCTCCCTCCTTCAGGT
GCCACTGACCATGCTCGGCCCGGACCCCGCCTTAACGGTCGGTCGCATCT
TGTACGAATATAAGATACATAACTGCGAGATGCTGATCCGGGAGGACGTC
AGCACGGACGAAGTCATCGACGTGATTGAAGGGAATCGGTAAGTAGGTGG
CACCCATCCATCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCATTCTCGAGGACGAGCTGGTCAGCACTCACCTCTCCCGTCTTC
CCTCCCCTCTTGCCCCCCCCCCTCTCTTAGGAAATACATCCGTTGTTTGT
ATGCCTACAACAAAATCGACACCATCACAATCGAGGACGTAGATAAGCTC
GCCCGGGAGCCTGATGCCATCGTCATCTCGGTCCGGCATAAGCTGAATTT
GGAGGTAAAACAAGGGAGGAAGGGGGCCGGGGGGGGAGAATGATAGCGTG
GCTGCTGGCTCTTTTCCCAGCGGAAGGGCGCATGACAATTGCTGTCACTT
TGATTTGCTTTCCCCTTTTATTTGTTACTTACAAGGCCCTCCCTCTCTCC
CTTCCTCCCTCCCTTCCTGGACAGCGGCTGCTCGAACGAATGTGGGACTA
CATGGGCCTGATCCGCGTCTACACAAAGCGACGGGGCTGTCCTCCCGTCT
TCCTTGAGCCACTTGTCCTGTCCTCGGAGCGGAGGGGCATTACAGTGGAG
GTGGCGTGCGAGAGTATTTCAAAAGGCATGTCCTGCCTTCCCTCCCTCCC
TCTCTTCCAACCTGCACCCTTCCTTCCTTTTGTTTCAGTGTGCATACTTA
TTGGCGCACCTGCCTTGACAATTTTCTGTGGTCCCTCTCTAAATCTGTCC
TTCCCGTTTTCCTGTACCTTTTTCTTCCTTCCTCATCATGCACAGAGCTT
TTCGAAATCTTCAACTACGCCTTGGTGTGGGGCCGGAGCACCAAATACGA
TCCCCAACGCTGCGGCTTGACCCACACTTTGGAAGATGAAGACGTTGTAC
AAGTTGTGGGCAAGACGGTAACGCAACAGAAGCGAGAAAAGGGATACTCG
AAGAAGGTGCAGGAGCATTGGGATGCCATCAAACTGAAGAGAAAGAAGGC
GGCGTTGCGATCGTAG
back to top

Coding sequence (CDS) from alignment at chr4:1214009..1216474+

>NO04G04470.1 ID=NO04G04470.1|Name=NO04G04470.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr4:1214009..1216474+ (Nannochloropsis oceanica)
ATGGGGATCGTCGACCGCATCAAGGAGATTGAGGAAGAAATGTCGCGCAC
TCAAAAGAACAAGGCCACGGAGCATCACCTCGGCGCGCTCAAAGCCCGTT
TGGCCAAGCTTCGTTCAGAGCTGTTGCTGGAAACAAGTAGCAAGGGCCCC
GGCTCATCTGGAACAGGGTTTGAAGTGGCGCGGAGTGGGGACGGGCGGGT
TGCGCTGATCGGCTTTCCTTCAGTGGGGAAGTCGTCCTTATTAAACACCT
TGACGGATACGGAGTCTCAGGCTGCCGCATACGAATTTACGACCTTGACA
TGCATTCCGGGGAACATCATTTACAACGATACCAAGATCCAGCTGCTCGA
TCTGCCGGGAATCATCGAGGGCGCGGCCCATGGCAAAGGCCGAGGGCGCG
AAGTCATCGCCGTCGCCCGCTCCTCCGACTTAGTTTTGATGGTGCTGGAT
GGGGGGAAGGAGCAAGTGAACAACCATCGGGCCATCCTCGAGAGGGAGTT
GGAGACCGTGGGCCTGCGCTTGAATAAGAAGCCGCCCAACATTTACTTCA
AGAAGAAGAAAGATGGGGGAGTCAAGTTCAACTCGACGGTGCCACTGACC
ATGCTCGGCCCGGACCCCGCCTTAACGGTCGGTCGCATCTTGTACGAATA
TAAGATACATAACTGCGAGATGCTGATCCGGGAGGACGTCAGCACGGACG
AAGTCATCGACGTGATTGAAGGGAATCGGAAATACATCCGTTGTTTGTAT
GCCTACAACAAAATCGACACCATCACAATCGAGGACGTAGATAAGCTCGC
CCGGGAGCCTGATGCCATCGTCATCTCGGTCCGGCATAAGCTGAATTTGG
AGCGGCTGCTCGAACGAATGTGGGACTACATGGGCCTGATCCGCGTCTAC
ACAAAGCGACGGGGCTGTCCTCCCGTCTTCCTTGAGCCACTTGTCCTGTC
CTCGGAGCGGAGGGGCATTACAGTGGAGGTGGCGTGCGAGAGTATTTCAA
AAGAGCTTTTCGAAATCTTCAACTACGCCTTGGTGTGGGGCCGGAGCACC
AAATACGATCCCCAACGCTGCGGCTTGACCCACACTTTGGAAGATGAAGA
CGTTGTACAAGTTGTGGGCAAGACGGTAACGCAACAGAAGCGAGAAAAGG
GATACTCGAAGAAGGTGCAGGAGCATTGGGATGCCATCAAACTGAAGAGA
AAGAAGGCGGCGTTGCGATCGTAG
back to top
Synonyms
Publications