NO04G04400.1, NO04G04400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04400.1
Unique NameNO04G04400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1687
Alignment locationchr4:1188067..1190157 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1188067..1190157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04400.1 vs.
Match: EWM28729.1 (uncharacterized protein Naga_100002g170 [Nannochloropsis gaditana])

HSP 1 Score: 240.4 bits (612), Expect = 6.500e-60
Identity = 138/257 (53.70%), Postives = 163/257 (63.42%), Query Frame = 0 
Query:    9 NSTLDKGLSLYTALEPFLYPSLNPALVLGQDISHHCPSLMYGELSRETLQKALALIDEDLGGLPPRGEGSFIDLGSGIGVQVFVAACMWGWKRCLGVEIYEKRAKLAREALRRWER----EVVGERDRGGGGGAGRGEGANGKSSSQEQSDGRGGSGNCRCSDRDVPLPPTLAVDFACGDVIDLGVEGFQVLLLVSAAFTDALMKTLAIALDGQPVGTFAICITKGLPSPKWEVVHKEEREEPWGRAWLIIQKKIVA 262
            +S    GL+LY+ LEP LYPSLNPALVLG DISHHCPSLMYGELS ETL KAL LIDE L  LP  GEGS ID+GSGIG Q+F AAC++                        W+R    E+  +R       A   E A  +  S++ S               +P+  T  VDFAC D++++ +EGFQV+LLVSAAFTD LM+++A  LD Q VGT AICITK LP PKWEVVHK EREEPWGRAWLIIQKKI+A
Sbjct:   20 SSKFQDGLALYSRLEPCLYPSLNPALVLGHDISHHCPSLMYGELSGETLVKALGLIDE-LEALPREGEGSLIDIGSGIGKQIFTAACVY-----------------------AWKRCIGVEIYEKR-------AKLAEQALQRWKSKQSS---------------IPMLRTRVVDFACDDIVEIEMEGFQVILLVSAAFTDTLMRSIAKVLDSQAVGTLAICITKALPGPKWEVVHKSEREEPWGRAWLIIQKKILA 230
The following BLAST results are available for this feature:
BLAST of NO04G04400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28729.16.500e-6053.70uncharacterized protein Naga_100002g170 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04400NO04G04400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04400.1NO04G04400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04400.1.cds1NO04G04400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04400.1 ID=NO04G04400.1|Name=NO04G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp
AAAACACGCGATCACAGGGCTTAGACAGGCAGGCGTTCCTTTTTCCCACA
CTCTTCGTGGACCGCCCGGGCAGCTGCAAATCAAACTGCCGGTCTTCCCC
TCAGGGCTTGAGACGAACTCCCCATTTTTCTCCTCCATTGCTAGTATAGA
CCATGGGGGGGGAGGAGAAAACAGTCGGGGATCACGTCTTGGTCATTCTT
TTCCTTCTTCTTTTGTTGCTAGTGGCCTGGACGTATTGGTTCCGCTCCCG
GCCGCGCACCACGGAGGTCGATATCGAGAGGGAAGGCGAGCAGAAGACCA
GAATAAGACACGAACGTGGTATCTAAGGATTGTATATGAGCGCAACAAGC
CGGTGGAGACCGCAGTTCGCAGTTCCCTGCCGCTCTTCCTCTCACTTCTT
CGACTCCCTTTTGCCATCCAAAAAGAAGTATATCATCCAACGTCAGGGAA
CGAAAGGCCGTGGTGGCGGAAGAGGAGGACATAAACAACACCCACATGTC
CTCTGTAACACCTGCTGCCCTCCCCTTCGTCGCTCATCGTTTCTTTTTCC
TTGCTCATTTTGCCCTATATACAACTGCCGCGTGCAATTAGGCAATTCTT
TGACACACATAACATAATAATATAATATAACAATTTATTACATGCTCTAT
GCCCGCCGTGCTTGTCCTCCATCATAGAAAAAGGAGGGATGGGGCTGTTT
GTTCCTATCTGCCGCCTTCCCGATGAGCCTTTCGCTTTGTTAGAGAGGAA
TGGCAAGCAAGAGATACAGAATCAAAAGAATCGCGAACCACGGATAGGGA
CCTCACTCCCCTTCCTCCCTTCCTCCATCCCCACCCACAGGAGCGGACAT
CATGACCACCACCACTGACACGACCAACAGCACCCTCGACAAAGGCCTGT
CCCTCTACACGGCCCTGGAACCCTTCCTCTACCCCTCCCTCAATCCCGCC
CTCGTTCTTGGCCAGGACATCTCACACCACTGTCCTTCATTGATGTACGG
AGAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGCCTTGATCGATGAAG
ACTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTTTCATTGACTTAGGG
TCAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGTATGTGGGGATGGAA
GAGATGTTTGGGTGTGGAGATATATGAGAAGAGAGCCAAACTGGCGAGAG
AGGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCGAGAGAGATCGAGGG
GGAGGAGGAGGAGCAGGACGGGGGGAAGGTGCGAATGGTAAAAGTAGCAG
TCAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAACTGTAGATGTAGTG
ATAGAGACGTTCCTCTTCCTCCCACCCTTGCTGTCGATTTTGCATGTGGT
GATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTCCTCTTACTTGTCTC
TGCTGCATTTACTGACGCTCTGATGAAAACCCTAGCCATCGCGTTAGATG
GGCAGCCGGTGGGGACGTTCGCTATTTGCATCACCAAAGGTCTGCCCAGT
CCAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAGGAGCCGTGGGGACG
CGCGTGGTTGATCATTCAGAAGAAAATTGTCGCATAAATTCTCATTCTTA
ACATTTTAAAGAACAGACGCAGAAAATTGATGTTCAA
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protein sequence of NO04G04400.1

>NO04G04400.1-protein ID=NO04G04400.1-protein|Name=NO04G04400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MTTTTDTTNSTLDKGLSLYTALEPFLYPSLNPALVLGQDISHHCPSLMYG
ELSRETLQKALALIDEDLGGLPPRGEGSFIDLGSGIGVQVFVAACMWGWK
RCLGVEIYEKRAKLAREALRRWEREVVGERDRGGGGGAGRGEGANGKSSS
QEQSDGRGGSGNCRCSDRDVPLPPTLAVDFACGDVIDLGVEGFQVLLLVS
AAFTDALMKTLAIALDGQPVGTFAICITKGLPSPKWEVVHKEEREEPWGR
AWLIIQKKIVA*
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mRNA from alignment at chr4:1188067..1190157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04400.1 ID=NO04G04400.1|Name=NO04G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at chr4:1188067..1190157+ (Nannochloropsis oceanica)
AAAACACGCGATCACAGGGCTTAGACAGGCAGGCGTTCCTTTTTCCCACA
CTCTTCGTGGACCGCCCGGGCAGCTGCAAATCAAACTGCCGGTCTTCCCC
TCAGGGCTTGAGACGAACTCCCCATTTTTCTCCTCCATTGCTAGTATAGA
CCATGGGGGGGGAGGAGAAAACAGTCGGGGATCACGTCTTGGTCATTCTT
TTCCTTCTTCTTTTGTTGCTAGTGGCCTGGACGTATTGGTTCCGCTCCCG
GCCGCGCACCACGGAGGTCGATATCGAGGTACGTTGCGAGGAAAGGAGGG
AGGAGGGGGGTTCAAGTGGAGTTGTGCCTTGGTCCTCGAAAGTTTTTGAC
GACGGTCTACCTAGCGTGCGAGTAGAAGATAGCTCAATGCTCAACTATGA
CATTTACGCTTGTTATGTTATCCTTGGTACGAAATATTTGACAGGAAAGG
TATGTATGGAAAAATGTATGTGCATATGTATATGAATATTTTCAGTTTGT
TCCATGGCGGCCAGGCGTCTCTCTCCACGTGCAAATGGACGTTTACTTTT
CTCTTCCCTTGACAGCGAGAATCGCACGACAAGAAATGTTATCAGTGTGT
ACACATGCTCTCGTTCTCCTTTACTCATTCACCATTCTCCATTCTCTCCT
CCCGAACCCGACATTCCAACCACACCGCACAGAGGGAAGGCGAGCAGAAG
ACCAGAATAAGACACGAACGTGGTATCTAAGGATTGTATATGAGCGCAAC
AAGCCGGTGGAGACCGCAGTTCGCAGTTCCCTGCCGCTCTTCCTCTCACT
TCTTCGACTCCCTTTTGCCATCCAAAAAGAAGTATATCATCCAACGTCAG
GGAACGAAAGGCCGTGGTGGCGGAAGAGGAGGACATAAACAACACCCACA
TGTCCTCTGTAACACCTGCTGCCCTCCCCTTCGTCGCTCATCGTTTCTTT
TTCCTTGCTCATTTTGCCCTATATACAACTGCCGCGTGCAATTAGGCAAT
TCTTTGACACACATAACATAATAATATAATATAACAATTTATTACATGCT
CTATGCCCGCCGTGCTTGTCCTCCATCATAGAAAAAGGAGGGATGGGGCT
GTTTGTTCCTATCTGCCGCCTTCCCGATGAGCCTTTCGCTTTGTTAGAGA
GGAATGGCAAGCAAGAGATACAGAATCAAAAGAATCGCGAACCACGGATA
GGGACCTCACTCCCCTTCCTCCCTTCCTCCATCCCCACCCACAGGAGCGG
ACATCATGACCACCACCACTGACACGACCAACAGCACCCTCGACAAAGGC
CTGTCCCTCTACACGGCCCTGGAACCCTTCCTCTACCCCTCCCTCAATCC
CGCCCTCGTTCTTGGCCAGGACATCTCACACCACTGTCCTTCATTGATGT
ACGGAGAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGCCTTGATCGAT
GAAGACTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTTTCATTGACTT
AGGGTCAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGTATGTGGGGAT
GGAAGAGATGTTTGGGTGTGGAGATATATGAGAAGAGAGCCAAACTGGCG
AGAGAGGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCGAGAGAGATCG
AGGGGGAGGAGGAGGAGCAGGACGGGGGGAAGGTGCGAATGGTAAAAGTA
GCAGTCAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAACTGTAGATGT
AGTGATAGAGACGTTCCTCTTCCTCCCACCCTTGCTGTCGATTTTGCATG
TGGTGATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTCCTCTTACTTG
TCTCTGCTGCATTTACTGACGCTCTGATGAAAACCCTAGCCATCGCGTTA
GATGGGCAGCCGGTGGGGACGTTCGCTATTTGCATCACCAAAGGTCTGCC
CAGTCCAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAGGAGCCGTGGG
GACGCGCGTGGTTGATCATTCAGAAGAAAATTGTCGCATAAATTCTCATT
CTTAACATTTTAAAGAACAGACGCAGAAAATTGATGTTCAA
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Coding sequence (CDS) from alignment at chr4:1188067..1190157+

>NO04G04400.1 ID=NO04G04400.1|Name=NO04G04400.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr4:1188067..1190157+ (Nannochloropsis oceanica)
ATGACCACCACCACTGACACGACCAACAGCACCCTCGACAAAGGCCTGTC
CCTCTACACGGCCCTGGAACCCTTCCTCTACCCCTCCCTCAATCCCGCCC
TCGTTCTTGGCCAGGACATCTCACACCACTGTCCTTCATTGATGTACGGA
GAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGCCTTGATCGATGAAGA
CTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTTTCATTGACTTAGGGT
CAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGTATGTGGGGATGGAAG
AGATGTTTGGGTGTGGAGATATATGAGAAGAGAGCCAAACTGGCGAGAGA
GGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCGAGAGAGATCGAGGGG
GAGGAGGAGGAGCAGGACGGGGGGAAGGTGCGAATGGTAAAAGTAGCAGT
CAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAACTGTAGATGTAGTGA
TAGAGACGTTCCTCTTCCTCCCACCCTTGCTGTCGATTTTGCATGTGGTG
ATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTCCTCTTACTTGTCTCT
GCTGCATTTACTGACGCTCTGATGAAAACCCTAGCCATCGCGTTAGATGG
GCAGCCGGTGGGGACGTTCGCTATTTGCATCACCAAAGGTCTGCCCAGTC
CAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAGGAGCCGTGGGGACGC
GCGTGGTTGATCATTCAGAAGAAAATTGTCGCATAA
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Synonyms
Publications