NO04G04380.2, NO04G04380.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04380.2
Unique NameNO04G04380.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2327
Alignment locationchr4:1183426..1186037 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1183426..1186037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04380.2 vs.
Match: EWM28764.1 (hypothetical protein Naga_100002g166 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 6.100e-44
Identity = 164/403 (40.69%), Postives = 229/403 (56.82%), Query Frame = 0 
Query:   26 MRRAGLSLTLALSAFAAAENVVPAVPAVISATALEGKAADVKTAAQNILIKTENVVPSGAKIGTDDKPLAFKVSKTAAGEDAVVLVVSNLKVAAAKLDEAMPEASLGCFTIGDDVGKVALLMCNGKDAEDAETATPI---KKDGVVYEWVKGVITNEGPEAICQLNFASVDTELAKIPNLETLPAELSELTSFKLEPKQKMDYAFLLPVDA-EKGVPTIGVMDSLGPCEMIEKAKAALAAG---ASDTLATATGVAEDAAA----LSKKSLEEA-AAAAAAAKAA--GQGALDATKAAAGD---------------AADATKAAAEEAAD------ATKAAAE-EAADATKTAAEEATDATKAAAGEAADATVKAGEVVPAVETEAAGVAAETAVKAEGEVTS 393
            MRRAGL   L  +AFAAAE+  PAV ++++     G+ ADVK+A QNILI+TE+  P+   +G    P+   +S    GE+A+VLV  +L VA            +GC+TIGDDV K+ALLMC  KD+     ATP+   +KDG  + WVKG +TNEGPEAICQL FAS D +L  +  +ET+P EL  LT FKLEP++ ++Y+FLLP+DA E   P +G+ D+LGPC+MIEKAK ALAAG     +TLA +   A DA A    ++KK+ + A AAA  A KAA   Q A D      GD               A D    +A+++AD      +T ++ E  A D    +A+++ D    +  + +   + A   +  ++    G AA+  VKA  E T+
Sbjct:    1 MRRAGLVAALTYAAFAAAEDAAPAVTSLVN-----GQTADVKSALQNILIQTEDAKPASITLGDAKTPMGISIS-NQPGEEAIVLVAPDLTVAP-------KVGQVGCYTIGDDVSKIALLMCEDKDS----AATPVPDKEKDGQAFAWVKGTLTNEGPEAICQLKFASNDLKLG-MAAIETVPKELENLTPFKLEPQESINYSFLLPIDAKEMAAPLVGIQDTLGPCKMIEKAKEALAAGKLVGGNTLADSGKAASDALAKGSDVAKKAADNANAAAEEALKAAKNSQVATDTENPDYGDDDDGDESTGSSTEMTAKDQLAQSADDSADDDDGDESTGSSTEMTAKDQLAQSADDSADDDGTSGDDGSPTELTAKSAIKGIKDALTG-AADATVKAAQEATA 384
The following BLAST results are available for this feature:
BLAST of NO04G04380.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28764.16.100e-4440.69hypothetical protein Naga_100002g166 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04380NO04G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04380.2NO04G04380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04380.2.cds1NO04G04380.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04380.2.cds2NO04G04380.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04380.2.cds3NO04G04380.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04380.2 ID=NO04G04380.2|Name=NO04G04380.2|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp
TCCGAGTACTTTTCCCACGGAGTGGGGGTATGGGTCGCTGGTCAGGAAGT
TTCCAGTAGAAACTACCACCAGTGTCAAAGCTCGCGATCTTTTTTGTTTG
TCATTCAGCTCGCTCGTCCTTGTCTTTCTTCTTGTCACATTTCCCCACAC
GGCGCACTGCTTAAACGTTGCTCGATATTGTACTTCCGGTCTTTTTCACT
TTACCCCGGCACACCCCGCCCACATGACTGTCTCACTTGTCCATGTCTGC
ACAACTGCCATTTTGGTCAGTAAAATGCTGCACCGAAACCTGGTGGTTTG
GTACACCACACCGGCACACACTCATTCGCACACAGTCAGAGTGCTTCCTG
GACTACAAGCGTCGACAGCAAACGTCGTCCCACGTGTGTCACGGCCGCTT
AGACCCGACCCTTTCCCACGATAATCTCTTCTTAGTTATGTGGTCCGTCC
TAGAGATGGTTGCACTTCTGCATGCACCACACCCACACCAACCCCCTCGC
ACCCCACAGCCAAACACCACCACTACCACCCTCTTCTTTATCAGCCATGC
GCCGCGCCGGTCTCTCCCTCACCCTTGCCCTCTCTGCCTTTGCTGCCGCC
GAGAACGTCGTTCCTGCCGTCCCCGCCGTTATCTCCGCCACCGCGCTCGA
GGGGAAGGCCGCGGATGTCAAGACCGCCGCACAAAATATCCTAATCAAGA
CGGAGAATGTGGTACCTTCTGGCGCCAAGATCGGTACCGACGACAAACCC
CTTGCATTCAAAGTCTCCAAGACCGCCGCCGGAGAGGACGCCGTTGTGCT
TGTCGTTTCCAATCTGAAGGTAGCCGCCGCCAAGCTCGACGAGGCCATGC
CTGAGGCCAGCCTCGGGTGCTTTACCATTGGGGACGACGTCGGCAAGGTC
GCCTTGTTGATGTGCAACGGCAAGGACGCCGAGGACGCCGAGACCGCTAC
GCCCATCAAGAAGGACGGGGTCGTTTACGAGTGGGTGAAGGGTGTCATTA
CAAACGAAGGCCCCGAAGCTATCTGCCAGCTCAACTTCGCTTCCGTCGAC
ACCGAGCTCGCCAAGATTCCCAATCTCGAGACCCTCCCCGCGGAGCTGTC
CGAGCTTACTTCGTTCAAGCTCGAGCCGAAGCAGAAGATGGATTACGCGT
TCCTGTTGCCTGTCGATGCCGAGAAAGGTGTCCCCACTATCGGAGTCATG
GACTCCCTCGGTCCCTGCGAGATGATCGAGAAGGCAAAGGCCGCCCTGGC
TGCGGGTGCCTCCGACACCCTGGCTACTGCCACGGGGGTGGCCGAGGACG
CTGCGGCCCTTAGCAAGAAGTCCCTCGAGGAGGCTGCTGCCGCCGCTGCG
GCTGCTAAGGCTGCCGGACAGGGTGCGCTCGATGCCACTAAGGCCGCTGC
TGGGGATGCGGCCGATGCTACCAAGGCCGCTGCAGAGGAGGCGGCCGATG
CTACTAAGGCCGCTGCAGAGGAGGCGGCCGATGCTACTAAGACCGCTGCT
GAGGAAGCGACCGATGCTACCAAGGCAGCTGCTGGGGAGGCGGCTGATGC
GACGGTCAAGGCTGGTGAGGTTGTTCCCGCAGTTGAGACTGAGGCGGCGG
GGGTTGCGGCCGAAACGGCGGTCAAGGCTGAGGGGGAGGTGACTTCCCCT
GCGCCCAAGATGTCGGCGTCTGTGATGGGATTGTTCACCGTGGCTGTCTT
GGTGGCCGTGCAGCTCCTGCTTTAAGCGGCTTTTCCGATTTCATTTTTTA
AATGCATGCCATTCCCATCTCGTAAATGGTTGCGGTGAATGAATAAGAAA
ATAATAGGAATGGAATGGACGGAGATGAGATGATGGGAACTGAGTAGCTT
TGGTCGAGGTAGAAAGGCATATTTCAAAAATCTTCACGCTCTTTTTTCGG
TGTGCACTATTTGATTATCTGATGTGGTGGATTTTTCACTGCTGACAATA
AAAATAAGATGATGACGAGGCAAGGTACCATTCGAAACGAAAAAAAGCTG
TGTACTCTAGAGAGTTAGAATTTGATTAATTAAGAATGGAGAAAAAAAGG
AAGAGAGAAGGAGAAGATTGGAAAGAGAGAGGAAGAATATATTCAGATAG
GAGGTTGGACTGCCAGTAAGGGGCAAGGAGGTGTCATTTTAAAATTTTGG
GGTGACCGCAAAAGCACGGATGGAATAACAAGAGGGAGCTGTCATTTGGA
TGCATAACTTACCAATTACATTATGTCGGGACAACACGACACAAGAGTGA
TAAAGGAGCAAAAGAATAAATTTATGGACACATATAGTAGAAGTGATCGA
ATTTCTTTCGTTCAGAATATCTATTTT
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protein sequence of NO04G04380.2

>NO04G04380.2-protein ID=NO04G04380.2-protein|Name=NO04G04380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MHHTHTNPLAPHSQTPPLPPSSLSAMRRAGLSLTLALSAFAAAENVVPAV
PAVISATALEGKAADVKTAAQNILIKTENVVPSGAKIGTDDKPLAFKVSK
TAAGEDAVVLVVSNLKVAAAKLDEAMPEASLGCFTIGDDVGKVALLMCNG
KDAEDAETATPIKKDGVVYEWVKGVITNEGPEAICQLNFASVDTELAKIP
NLETLPAELSELTSFKLEPKQKMDYAFLLPVDAEKGVPTIGVMDSLGPCE
MIEKAKAALAAGASDTLATATGVAEDAAALSKKSLEEAAAAAAAAKAAGQ
GALDATKAAAGDAADATKAAAEEAADATKAAAEEAADATKTAAEEATDAT
KAAAGEAADATVKAGEVVPAVETEAAGVAAETAVKAEGEVTSPAPKMSAS
VMGLFTVAVLVAVQLLL*
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mRNA from alignment at chr4:1183426..1186037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04380.2 ID=NO04G04380.2|Name=NO04G04380.2|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr4:1183426..1186037- (Nannochloropsis oceanica)
TCCGAGTACTTTTCCCACGGAGTGGGGGTATGGGTCGCTGGTCAGGAAGT
TTCCAGTAGAAACTACCACCAGTGTCAAAGCTCGCGATCTTTTTTGTTTG
TCATTCAGCTCGCTCGTCCTTGTCTTTCTTCTTGTCACATTTCCCCACAC
GGCGCACTGCTTAAACGTTGCTCGATATTGTACTTCCGGTCTTTTTCACT
TTACCCCGGCACACCCCGCCCACATGACTGTCTCACTTGTCCATGTCTGC
ACAACTGCCATTTTGGTCAGTAAAATGCTGCACCGAAACCTGGTGGTTTG
GTACACCACACCGGCACACACTCATTCGCACACAGTCAGAGTGCTTCCTG
GACTACAAGCGTCGACAGCAAACGTCGTCCCACGTGTGTCACGGCCGCTT
AGACCCGACCCTTTCCCACGATAATCTCTTCTTAGTTATGTGGTCCGTCC
TAGAGATGGTTGCACTTCTGCATGCACCACACCCACACCAACCCCCTCGC
ACCCCACAGCCAAACACCACCACTACCACCCTCTTCTTTATCAGCCATGC
GCCGCGCCGGTCTCTCCCTCACCCTTGCCCTCTCTGCCTTTGCTGCCGCC
GAGAACGTCGTTCCTGCCGTCCCCGCCGTTATCTCCGCCACCGCGCTCGA
GGGGAAGGCCGCGGATGTCAAGACCGCCGCACAAAATATCCTAATCAAGA
CGGAGAATGTGGTACCTTCTGGCGCCAAGATCGGTACCGACGACAAACCC
CTTGCATTCAAAGTCTCCAAGACCGCCGCCGGAGAGGACGCCGTTGTGTA
AGTGCTCAAACAAGGGTGGAAGAGAAAAGGACGGGTGGGACGGTGAAAAT
GATAAAGATGAGGAAAAGATTATTTACTCAGCCTCTTCTTCTCCTCCCCT
GTCCCACCCAACCCATACAGGCTTGTCGTTTCCAATCTGAAGGTAGCCGC
CGCCAAGCTCGACGAGGCCATGCCTGAGGCCAGCCTCGGGTGCTTTACCA
TTGGGGACGACGTCGGCAAGGTCGCCTTGTTGATGTGCAACGGCAAGGAC
GCCGAGGACGCCGAGACCGCTACGCCCATCAAGAAGGGTGAGTATTAGTT
GCCTTCGCTAAACTTAGCCATTTATTATGTATGTGGGACATACCCATTTG
TCCTTTTGTTATGTCCCACTTCTCGGTAGGACATGCCGACACTCTCTCAC
TCACCACCCAACACCCTCAACGAACACCTCCACAAAACAAACACATCAGA
CGGGGTCGTTTACGAGTGGGTGAAGGGTGTCATTACAAACGAAGGCCCCG
AAGCTATCTGCCAGCTCAACTTCGCTTCCGTCGACACCGAGCTCGCCAAG
ATTCCCAATCTCGAGACCCTCCCCGCGGAGCTGTCCGAGCTTACTTCGTT
CAAGCTCGAGCCGAAGCAGAAGATGGATTACGCGTTCCTGTTGCCTGTCG
ATGCCGAGAAAGGTGTCCCCACTATCGGAGTCATGGACTCCCTCGGTCCC
TGCGAGATGATCGAGAAGGCAAAGGCCGCCCTGGCTGCGGGTGCCTCCGA
CACCCTGGCTACTGCCACGGGGGTGGCCGAGGACGCTGCGGCCCTTAGCA
AGAAGTCCCTCGAGGAGGCTGCTGCCGCCGCTGCGGCTGCTAAGGCTGCC
GGACAGGGTGCGCTCGATGCCACTAAGGCCGCTGCTGGGGATGCGGCCGA
TGCTACCAAGGCCGCTGCAGAGGAGGCGGCCGATGCTACTAAGGCCGCTG
CAGAGGAGGCGGCCGATGCTACTAAGACCGCTGCTGAGGAAGCGACCGAT
GCTACCAAGGCAGCTGCTGGGGAGGCGGCTGATGCGACGGTCAAGGCTGG
TGAGGTTGTTCCCGCAGTTGAGACTGAGGCGGCGGGGGTTGCGGCCGAAA
CGGCGGTCAAGGCTGAGGGGGAGGTGACTTCCCCTGCGCCCAAGATGTCG
GCGTCTGTGATGGGATTGTTCACCGTGGCTGTCTTGGTGGCCGTGCAGCT
CCTGCTTTAAGCGGCTTTTCCGATTTCATTTTTTAAATGCATGCCATTCC
CATCTCGTAAATGGTTGCGGTGAATGAATAAGAAAATAATAGGAATGGAA
TGGACGGAGATGAGATGATGGGAACTGAGTAGCTTTGGTCGAGGTAGAAA
GGCATATTTCAAAAATCTTCACGCTCTTTTTTCGGTGTGCACTATTTGAT
TATCTGATGTGGTGGATTTTTCACTGCTGACAATAAAAATAAGATGATGA
CGAGGCAAGGTACCATTCGAAACGAAAAAAAGCTGTGTACTCTAGAGAGT
TAGAATTTGATTAATTAAGAATGGAGAAAAAAAGGAAGAGAGAAGGAGAA
GATTGGAAAGAGAGAGGAAGAATATATTCAGATAGGAGGTTGGACTGCCA
GTAAGGGGCAAGGAGGTGTCATTTTAAAATTTTGGGGTGACCGCAAAAGC
ACGGATGGAATAACAAGAGGGAGCTGTCATTTGGATGCATAACTTACCAA
TTACATTATGTCGGGACAACACGACACAAGAGTGATAAAGGAGCAAAAGA
ATAAATTTATGGACACATATAGTAGAAGTGATCGAATTTCTTTCGTTCAG
AATATCTATTTT
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Coding sequence (CDS) from alignment at chr4:1183426..1186037-

>NO04G04380.2 ID=NO04G04380.2|Name=NO04G04380.2|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr4:1183426..1186037- (Nannochloropsis oceanica)
ATGCACCACACCCACACCAACCCCCTCGCACCCCACAGCCAAACACCACC
ACTACCACCCTCTTCTTTATCAGCCATGCGCCGCGCCGGTCTCTCCCTCA
CCCTTGCCCTCTCTGCCTTTGCTGCCGCCGAGAACGTCGTTCCTGCCGTC
CCCGCCGTTATCTCCGCCACCGCGCTCGAGGGGAAGGCCGCGGATGTCAA
GACCGCCGCACAAAATATCCTAATCAAGACGGAGAATGTGGTACCTTCTG
GCGCCAAGATCGGTACCGACGACAAACCCCTTGCATTCAAAGTCTCCAAG
ACCGCCGCCGGAGAGGACGCCGTTGTGCTTGTCGTTTCCAATCTGAAGGT
AGCCGCCGCCAAGCTCGACGAGGCCATGCCTGAGGCCAGCCTCGGGTGCT
TTACCATTGGGGACGACGTCGGCAAGGTCGCCTTGTTGATGTGCAACGGC
AAGGACGCCGAGGACGCCGAGACCGCTACGCCCATCAAGAAGGACGGGGT
CGTTTACGAGTGGGTGAAGGGTGTCATTACAAACGAAGGCCCCGAAGCTA
TCTGCCAGCTCAACTTCGCTTCCGTCGACACCGAGCTCGCCAAGATTCCC
AATCTCGAGACCCTCCCCGCGGAGCTGTCCGAGCTTACTTCGTTCAAGCT
CGAGCCGAAGCAGAAGATGGATTACGCGTTCCTGTTGCCTGTCGATGCCG
AGAAAGGTGTCCCCACTATCGGAGTCATGGACTCCCTCGGTCCCTGCGAG
ATGATCGAGAAGGCAAAGGCCGCCCTGGCTGCGGGTGCCTCCGACACCCT
GGCTACTGCCACGGGGGTGGCCGAGGACGCTGCGGCCCTTAGCAAGAAGT
CCCTCGAGGAGGCTGCTGCCGCCGCTGCGGCTGCTAAGGCTGCCGGACAG
GGTGCGCTCGATGCCACTAAGGCCGCTGCTGGGGATGCGGCCGATGCTAC
CAAGGCCGCTGCAGAGGAGGCGGCCGATGCTACTAAGGCCGCTGCAGAGG
AGGCGGCCGATGCTACTAAGACCGCTGCTGAGGAAGCGACCGATGCTACC
AAGGCAGCTGCTGGGGAGGCGGCTGATGCGACGGTCAAGGCTGGTGAGGT
TGTTCCCGCAGTTGAGACTGAGGCGGCGGGGGTTGCGGCCGAAACGGCGG
TCAAGGCTGAGGGGGAGGTGACTTCCCCTGCGCCCAAGATGTCGGCGTCT
GTGATGGGATTGTTCACCGTGGCTGTCTTGGTGGCCGTGCAGCTCCTGCT
TTAA
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Synonyms
Publications