NO04G04320.1, NO04G04320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04320.1
Unique NameNO04G04320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1867
Alignment locationchr4:1167476..1169342 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1167476..1169342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04320.1 vs.
Match: EWM28664.1 (nuclear autoantigenic sperm protein [Nannochloropsis gaditana])

HSP 1 Score: 386.0 bits (990), Expect = 1.800e-103
Identity = 283/541 (52.31%), Postives = 342/541 (63.22%), Query Frame = 0 
Query:    1 MASSASPASAA--ATSSSSGTPQEQLEAMLRDPRYKQGVALTKLGKYDEALEFLGACVALVASEDDLSLAAAPVYFAYGDALLSKAEDSADLFGAAMKKAEEEGGGEDE-DEDVGENMEPEGGMKPESGSSSSAAAASSSSG----GG---------SGAEAQEEKEEKEEEEGGEATKVVIPEDVQDDLEVAWENLEAARVIYHKHEGVVDIDPKRIGEVYLRLGDLQKNNGNFSQAVEDYLRSLGIYGKVCGEDSRVIAELHYQLAMTYIYASGVGGGGGEGGGEGAVGLKKKALEHYERCARVFELLVSKAQADVATAGGRGGGEEE----------KGKGKASATTTPIKTSPAENLKEFTEILDELKETIEATKHEILAASDPMNEGERARTRA-VTTVGFDAPSCSVAAAADAAVAGDG---DGKGGGASS-------------NGAVANV-------MMTVKKKVKPATAAPAAPAAPAPVEPEKKKEESVLVEEQKQQQLDKMEGKSSPKKRLATEQTEGPAEPPLAKEARTE 492
            MASS++ A AA  A      TPQE+L AML DPRYKQGVAL K G++DEALEFLG+CVAL ASEDD+SLAAAPVYFAYGDALLSKAE+S DLFGAAM  A+E+ G E+E +E+  E  E  G     + +SSS  A SS++G    GG         + ++A  E   +E + GGE TKV IPEDVQDDLEVAWENLEA+RVIYHKHE +VD  P ++GEVYLRLGDLQK NGNF+QAV+DYLRSL IY KVC EDSRVIA+LHYQLAM YIYAS           E AV  K KALEHY +CARVFE+LV KA+   ATAG  G GEE+          +G+    +   P K++PAE+LKEF EIL EL+ETIEAT+ E+ AA      G  A+    VTT+GF  P  S      A    +G   +G GGGA+              +G  A+V       +M VKKK K  +  P A ++P           +  +E +K     + E K SPKKRL TEQTEGPAE P++KEAR E
Sbjct:    1 MASSSTTAHAASSAVGDKKDTPQERLAAMLEDPRYKQGVALCKRGQFDEALEFLGSCVALAASEDDVSLAAAPVYFAYGDALLSKAEESVDLFGAAMTAAKEKVGEEEEGEEEAEEECEGHGSTSDAAAASSSNEANSSNNGVAMAGGESCTKAPATASSKAIGETAYEEGDTGGEITKVGIPEDVQDDLEVAWENLEASRVIYHKHEDMVD--PMKLGEVYLRLGDLQKANGNFTQAVDDYLRSLEIYAKVCDEDSRVIADLHYQLAMMYIYASVEE--------EHAVTFKSKALEHYIQCARVFEILVEKARKAAATAGKVGDGEEDGSSFPKEGRKEGEDAVKSPPPPPKSTPAEDLKEFEEILAELRETIEATRQELSAA------GSVAKAPGPVTTIGFGQPLASSLGPPAAHGEAEGISRNGSGGGAAHLKGQSEKMGPRTLDGGQASVATTAAVNVMAVKKKTK--SLIPTASSSPREPSAGLSAAAAGKMEAKKDDLEPQSEEKMSPKKRLVTEQTEGPAELPISKEARFE 523
The following BLAST results are available for this feature:
BLAST of NO04G04320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28664.11.800e-10352.31nuclear autoantigenic sperm protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04320NO04G04320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04320.1NO04G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04320.1.cds1NO04G04320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04320.1 ID=NO04G04320.1|Name=NO04G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp
ACAGACACACCATGGCCTCTTCCGCTTCGCCAGCCTCGGCCGCCGCCACC
AGCAGCAGTAGCGGCACCCCGCAAGAGCAGCTGGAGGCCATGTTGCGAGA
TCCCCGTTACAAGCAAGGGGTGGCCTTGACCAAGCTGGGGAAGTACGACG
AAGCTCTCGAGTTCCTGGGGGCTTGCGTCGCGTTGGTGGCGTCGGAGGAC
GACTTATCCTTGGCAGCCGCGCCCGTTTATTTTGCATACGGCGATGCCCT
GCTGAGTAAGGCGGAGGACTCGGCAGACCTGTTCGGGGCGGCCATGAAGA
AGGCCGAGGAGGAGGGCGGGGGGGAGGACGAGGACGAGGACGTTGGGGAG
AACATGGAGCCAGAGGGAGGTATGAAACCAGAATCTGGCAGCAGCAGTTC
CGCTGCTGCTGCGTCATCATCCTCGGGTGGCGGCAGTGGTGCGGAGGCGC
AGGAAGAGAAGGAAGAAAAGGAAGAAGAGGAAGGAGGGGAGGCAACAAAG
GTGGTCATTCCCGAAGATGTGCAAGATGACTTGGAGGTGGCTTGGGAGAA
CTTAGAGGCGGCGCGTGTGATCTACCATAAGCATGAGGGAGTGGTTGATA
TTGACCCCAAGCGAATTGGAGAGGTTTATTTGAGGTTAGGGGACCTGCAA
AAAAACAATGGCAACTTTAGCCAGGCTGTGGAAGATTACCTGAGGAGCCT
AGGCATATATGGTAAGGTGTGTGGAGAGGATAGCCGAGTGATTGCCGAGT
TACATTATCAGTTGGCGATGACGTATATTTATGCGTCGGGCGTTGGAGGA
GGGGGAGGAGAGGGAGGAGGGGAGGGAGCAGTGGGTTTGAAGAAGAAGGC
CCTGGAGCATTACGAGAGGTGCGCGCGGGTATTTGAGTTGTTGGTGTCCA
AGGCGCAGGCGGACGTAGCAACAGCAGGCGGAAGAGGTGGAGGGGAGGAG
GAGAAGGGGAAGGGGAAGGCATCTGCGACAACAACGCCGATAAAGACAAG
CCCAGCGGAAAACTTGAAAGAGTTCACAGAGATCTTGGATGAGCTCAAAG
AGACGATCGAAGCGACCAAGCATGAGATACTGGCGGCAAGTGATCCGATG
AATGAAGGCGAGAGGGCGAGGACGAGGGCTGTGACTACTGTGGGCTTTGA
TGCCCCGTCTTGTTCTGTTGCTGCTGCTGCAGACGCTGCGGTAGCGGGAG
ATGGAGATGGGAAGGGAGGAGGAGCGAGCAGCAATGGCGCAGTAGCCAAT
GTGATGATGACAGTGAAGAAAAAGGTCAAGCCCGCAACTGCTGCTCCTGC
GGCTCCTGCTGCCCCTGCTCCTGTGGAGCCTGAGAAGAAAAAGGAGGAAT
CGGTGCTGGTGGAAGAGCAGAAGCAACAGCAGCTGGACAAGATGGAGGGG
AAAAGCAGCCCAAAAAAGCGGTTGGCGACGGAGCAAACAGAGGGGCCCGC
GGAGCCACCTCTGGCCAAGGAGGCACGGACGGAGTAGAAAGAGGAATGAT
GAAGTGGGACGCTACAAAGAGGGGGGTGGGGGGGAATGGGGTGGAAATGA
TGAAGGTTAGAATGTAGAACTACTCGAAAAGAAATTTGGAAGGAGTTTTT
CCATGGCATACACCTTGAATGGAATGAATTTCAAACGCAAAAGTCAGCGA
AAACTCGGGAAGGGAATTAAGGGGGGGAAAAAGCAAGTGAACAGTCAGGA
GATCCATCCACATAGCGAACCAGCCAGCACACACACAAACAGAAAATTGA
GGAAGAAATAAGAAAAACAAGAGCCTCATAAGAAGGTATAAAACCAACAT
ATCGCTTTCTACCTGATTGATGCATAGCGTGGCACCACGAAGATGTCCAC
ACGAAGACAAAGGGGGA
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protein sequence of NO04G04320.1

>NO04G04320.1-protein ID=NO04G04320.1-protein|Name=NO04G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MASSASPASAAATSSSSGTPQEQLEAMLRDPRYKQGVALTKLGKYDEALE
FLGACVALVASEDDLSLAAAPVYFAYGDALLSKAEDSADLFGAAMKKAEE
EGGGEDEDEDVGENMEPEGGMKPESGSSSSAAAASSSSGGGSGAEAQEEK
EEKEEEEGGEATKVVIPEDVQDDLEVAWENLEAARVIYHKHEGVVDIDPK
RIGEVYLRLGDLQKNNGNFSQAVEDYLRSLGIYGKVCGEDSRVIAELHYQ
LAMTYIYASGVGGGGGEGGGEGAVGLKKKALEHYERCARVFELLVSKAQA
DVATAGGRGGGEEEKGKGKASATTTPIKTSPAENLKEFTEILDELKETIE
ATKHEILAASDPMNEGERARTRAVTTVGFDAPSCSVAAAADAAVAGDGDG
KGGGASSNGAVANVMMTVKKKVKPATAAPAAPAAPAPVEPEKKKEESVLV
EEQKQQQLDKMEGKSSPKKRLATEQTEGPAEPPLAKEARTE*
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mRNA from alignment at chr4:1167476..1169342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04320.1 ID=NO04G04320.1|Name=NO04G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr4:1167476..1169342- (Nannochloropsis oceanica)
ACAGACACACCATGGCCTCTTCCGCTTCGCCAGCCTCGGCCGCCGCCACC
AGCAGCAGTAGCGGCACCCCGCAAGAGCAGCTGGAGGCCATGTTGCGAGA
TCCCCGTTACAAGCAAGGGGTGGCCTTGACCAAGCTGGGGAAGTACGACG
AAGCTCTCGAGTTCCTGGGGGCTTGCGTCGCGTTGGTGGCGTCGGAGGAC
GACTTATCCTTGGCAGCCGCGCCCGTTTATTTTGCATACGGCGATGCCCT
GCTGAGTAAGGCGGAGGACTCGGCAGACCTGTTCGGGGCGGCCATGAAGA
AGGCCGAGGAGGAGGGCGGGGGGGAGGACGAGGACGAGGACGTTGGGGAG
AACATGGAGCCAGAGGGAGGTATGAAACCAGAATCTGGCAGCAGCAGTTC
CGCTGCTGCTGCGTCATCATCCTCGGGTGGCGGCAGTGGTGCGGAGGCGC
AGGAAGAGAAGGAAGAAAAGGAAGAAGAGGAAGGAGGGGAGGCAACAAAG
GTGGTCATTCCCGAAGATGTGCAAGATGACTTGGAGGTGGCTTGGGAGAA
CTTAGAGGCGGCGCGTGTGATCTACCATAAGCATGAGGGAGTGGTTGATA
TTGACCCCAAGCGAATTGGAGAGGTTTATTTGAGGTTAGGGGACCTGCAA
AAAAACAATGGCAACTTTAGCCAGGCTGTGGAAGATTACCTGAGGAGCCT
AGGCATATATGGTAAGGTGTGTGGAGAGGATAGCCGAGTGATTGCCGAGT
TACATTATCAGTTGGCGATGACGTATATTTATGCGTCGGGCGTTGGAGGA
GGGGGAGGAGAGGGAGGAGGGGAGGGAGCAGTGGGTTTGAAGAAGAAGGC
CCTGGAGCATTACGAGAGGTGCGCGCGGGTATTTGAGTTGTTGGTGTCCA
AGGCGCAGGCGGACGTAGCAACAGCAGGCGGAAGAGGTGGAGGGGAGGAG
GAGAAGGGGAAGGGGAAGGCATCTGCGACAACAACGCCGATAAAGACAAG
CCCAGCGGAAAACTTGAAAGAGTTCACAGAGATCTTGGATGAGCTCAAAG
AGACGATCGAAGCGACCAAGCATGAGATACTGGCGGCAAGTGATCCGATG
AATGAAGGCGAGAGGGCGAGGACGAGGGCTGTGACTACTGTGGGCTTTGA
TGCCCCGTCTTGTTCTGTTGCTGCTGCTGCAGACGCTGCGGTAGCGGGAG
ATGGAGATGGGAAGGGAGGAGGAGCGAGCAGCAATGGCGCAGTAGCCAAT
GTGATGATGACAGTGAAGAAAAAGGTCAAGCCCGCAACTGCTGCTCCTGC
GGCTCCTGCTGCCCCTGCTCCTGTGGAGCCTGAGAAGAAAAAGGAGGAAT
CGGTGCTGGTGGAAGAGCAGAAGCAACAGCAGCTGGACAAGATGGAGGGG
AAAAGCAGCCCAAAAAAGCGGTTGGCGACGGAGCAAACAGAGGGGCCCGC
GGAGCCACCTCTGGCCAAGGAGGCACGGACGGAGTAGAAAGAGGAATGAT
GAAGTGGGACGCTACAAAGAGGGGGGTGGGGGGGAATGGGGTGGAAATGA
TGAAGGTTAGAATGTAGAACTACTCGAAAAGAAATTTGGAAGGAGTTTTT
CCATGGCATACACCTTGAATGGAATGAATTTCAAACGCAAAAGTCAGCGA
AAACTCGGGAAGGGAATTAAGGGGGGGAAAAAGCAAGTGAACAGTCAGGA
GATCCATCCACATAGCGAACCAGCCAGCACACACACAAACAGAAAATTGA
GGAAGAAATAAGAAAAACAAGAGCCTCATAAGAAGGTATAAAACCAACAT
ATCGCTTTCTACCTGATTGATGCATAGCGTGGCACCACGAAGATGTCCAC
ACGAAGACAAAGGGGGA
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Coding sequence (CDS) from alignment at chr4:1167476..1169342-

>NO04G04320.1 ID=NO04G04320.1|Name=NO04G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr4:1167476..1169342- (Nannochloropsis oceanica)
ATGGCCTCTTCCGCTTCGCCAGCCTCGGCCGCCGCCACCAGCAGCAGTAG
CGGCACCCCGCAAGAGCAGCTGGAGGCCATGTTGCGAGATCCCCGTTACA
AGCAAGGGGTGGCCTTGACCAAGCTGGGGAAGTACGACGAAGCTCTCGAG
TTCCTGGGGGCTTGCGTCGCGTTGGTGGCGTCGGAGGACGACTTATCCTT
GGCAGCCGCGCCCGTTTATTTTGCATACGGCGATGCCCTGCTGAGTAAGG
CGGAGGACTCGGCAGACCTGTTCGGGGCGGCCATGAAGAAGGCCGAGGAG
GAGGGCGGGGGGGAGGACGAGGACGAGGACGTTGGGGAGAACATGGAGCC
AGAGGGAGGTATGAAACCAGAATCTGGCAGCAGCAGTTCCGCTGCTGCTG
CGTCATCATCCTCGGGTGGCGGCAGTGGTGCGGAGGCGCAGGAAGAGAAG
GAAGAAAAGGAAGAAGAGGAAGGAGGGGAGGCAACAAAGGTGGTCATTCC
CGAAGATGTGCAAGATGACTTGGAGGTGGCTTGGGAGAACTTAGAGGCGG
CGCGTGTGATCTACCATAAGCATGAGGGAGTGGTTGATATTGACCCCAAG
CGAATTGGAGAGGTTTATTTGAGGTTAGGGGACCTGCAAAAAAACAATGG
CAACTTTAGCCAGGCTGTGGAAGATTACCTGAGGAGCCTAGGCATATATG
GTAAGGTGTGTGGAGAGGATAGCCGAGTGATTGCCGAGTTACATTATCAG
TTGGCGATGACGTATATTTATGCGTCGGGCGTTGGAGGAGGGGGAGGAGA
GGGAGGAGGGGAGGGAGCAGTGGGTTTGAAGAAGAAGGCCCTGGAGCATT
ACGAGAGGTGCGCGCGGGTATTTGAGTTGTTGGTGTCCAAGGCGCAGGCG
GACGTAGCAACAGCAGGCGGAAGAGGTGGAGGGGAGGAGGAGAAGGGGAA
GGGGAAGGCATCTGCGACAACAACGCCGATAAAGACAAGCCCAGCGGAAA
ACTTGAAAGAGTTCACAGAGATCTTGGATGAGCTCAAAGAGACGATCGAA
GCGACCAAGCATGAGATACTGGCGGCAAGTGATCCGATGAATGAAGGCGA
GAGGGCGAGGACGAGGGCTGTGACTACTGTGGGCTTTGATGCCCCGTCTT
GTTCTGTTGCTGCTGCTGCAGACGCTGCGGTAGCGGGAGATGGAGATGGG
AAGGGAGGAGGAGCGAGCAGCAATGGCGCAGTAGCCAATGTGATGATGAC
AGTGAAGAAAAAGGTCAAGCCCGCAACTGCTGCTCCTGCGGCTCCTGCTG
CCCCTGCTCCTGTGGAGCCTGAGAAGAAAAAGGAGGAATCGGTGCTGGTG
GAAGAGCAGAAGCAACAGCAGCTGGACAAGATGGAGGGGAAAAGCAGCCC
AAAAAAGCGGTTGGCGACGGAGCAAACAGAGGGGCCCGCGGAGCCACCTC
TGGCCAAGGAGGCACGGACGGAGTAG
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Synonyms
Publications