NO04G04300.2, NO04G04300.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04300.2
Unique NameNO04G04300.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2026
Alignment locationchr4:1161988..1164289 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1161988..1164289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G04300.2 vs.
Match: EWM28807.1 (riboflavin biosynthesis protein [Nannochloropsis gaditana])

HSP 1 Score: 628.2 bits (1619), Expect = 1.600e-176
Identity = 304/376 (80.85%), Postives = 335/376 (89.10%), Query Frame = 0
Query:    5 EVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEATL 381
            EV+E    E   PSY+E+DRKHMRRAL LA+ ALGKTRPNPVVGCVI+DQ G +VGEGFHPKAG+PHAEVFAL+EAG++ARGGT YVTLEPCNH GKTPPCVDALL AG+KKVVAGMVDPFPLVGGKGLARL + GVEVVVGCE+ KCQ LNRPFVHRV HGTPLGFLPLTY    FVRP+P TVQLGDGGKAL+MIDA+VVDFNVKGEGLQTV  L+ AGLLQDEVVR+VLANDL+ LP EWAK+KK +VRK+VLT++I  Q AAV  LEGRGVEV+ MPTDPLAVGKY+H L LLSALWLLCPEGAK AVKAGVVQDLWIH TLQEAD+LDGVDDPDFLGRQFGRPMK++VMSCDA+GTKACLLSLT+DD ATL
Sbjct:   69 EVDEESMAEIQEPSYSESDRKHMRRALHLAAQALGKTRPNPVVGCVILDQEGVVVGEGFHPKAGQPHAEVFALKEAGDRARGGTVYVTLEPCNHHGKTPPCVDALLEAGIKKVVAGMVDPFPLVGGKGLARLADNGVEVVVGCEEGKCQALNRPFVHRVQHGTPLGFLPLTYSRQDFVRPAPATVQLGDGGKALEMIDAIVVDFNVKGEGLQTVAALQTAGLLQDEVVRIVLANDLSALPVEWAKHKKASVRKVVLTTSIAGQEAAVEVLEGRGVEVIAMPTDPLAVGKYMHGLGLLSALWLLCPEGAKRAVKAGVVQDLWIHATLQEADDLDGVDDPDFLGRQFGRPMKMSVMSCDAVGTKACLLSLTIDDTATL 444          
The following BLAST results are available for this feature:
BLAST of NO04G04300.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28807.11.600e-17680.85riboflavin biosynthesis protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04300NO04G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04300.2NO04G04300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04300.2.cds1NO04G04300.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp
GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA
CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG
GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC
ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG
AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC
TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA
TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC
AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA
GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT
CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT
CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC
TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA
CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG
GCTCATCCACGAGCCCATTAAGTGCAACGAAATCCCAGTAATTCCCCTTT
CTACCTCACATCACACCACTCAAACAGCCTTCATGATGGACCCTGAAGTC
GAAGAGGCCCTTGGAAATGAAACTGATCCCCCCTCTTATACCGAAACTGA
CCGTAAACACATGCGTCGCGCCCTCCGACTTGCCTCTTACGCGCTTGGCA
AGACCCGCCCCAACCCCGTGGTCGGATGCGTCATCATCGACCAAAACGGA
AAATTAGTCGGAGAGGGCTTCCATCCTAAGGCCGGAGAGCCTCATGCAGA
AGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAGCAAGGGGAGGGACGGCAT
ACGTGACGCTGGAGCCATGTAATCACACGGGGAAGACTCCTCCCTGTGTG
GATGCCCTCCTTGCGGCAGGTGTCAAAAAAGTAGTAGCGGGCATGGTCGA
CCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGGCAAGGCTGGAAGAGGGGG
GTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAGAAGTGTCAGGAGTTGAAC
CGGCCGTTTGTTCACAGGGTAATGCATGGGACACCGTTGGGGTTTTTGCC
GTTGACCTACCGGGGGCATAGCTTCGTCAGACCCTCCCCTGATACGGTCC
AACTGGGGGATGGGGGAAAGGCGCTACAAATGATTGATGCTGTAGTGGTG
GACTTCAATGTGAAGGGTGAGGGGTTGCAGACTGTTACTACGCTTGAAAA
GGCGGGTCTGCTGCAGGATGAGGTCGTGAGGGTGGTGTTGGCAAATGACT
TAGCCGGGCTACCGAGCGAGTGGGCCAAAAACAAAAAAAAGACGGTGAGG
AAAATTGTCCTGACTTCAAACATCGAGGCGCAACGAGCTGCTGTGGTAGG
GTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAATGCCGACAGATCCCTTGG
CTGTGGGCAAGTACTTGCATGACTTAGATTTGTTGTCGGCGTTATGGCTG
TTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAAGGCGGGAGTGGTGCAGGA
TTTGTGGATCCATGTGACGTTGCAGGAGGCGGACGAGCTTGATGGGGTGG
ATGATCCCGATTTCTTGGGGAGGCAGTTTGGGAGGCCGATGAAGGTAGCG
GTGATGAGTTGTGATGCGATTGGGACAAAGGCGTGCTTGTTGAGTTTGAC
AGTGGATGATGAGGCGACGCTTTGAGGGCGGGAGTGTGAGAAGGCATGTG
CGTGAGATAATTGTGTGTATTTACTTCGGCGTGAGACGTTCCTTTTTCCA
TCCCATTTTGTCGATAGTAGCTAGTGGCAGCAATTTGTACCTAGCCACTT
CCAAATTAATACTTACGTACGTGGAA
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protein sequence of NO04G04300.2

>NO04G04300.2-protein ID=NO04G04300.2-protein|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MMDPEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCV
IIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTG
KTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKE
KCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQM
IDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKN
KKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDL
LSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFG
RPMKVAVMSCDAIGTKACLLSLTVDDEATL*
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mRNA from alignment at chr4:1161988..1164289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica)
GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG GCTCATCCACGAGCCCATTAAGTGCAACGAGTAAGTATGAAGTATATGCA AGAGCAGCGACGCCGGATACATCCCATATGTATATCCCCCCCTTTTTTTT CTCTTCCTTTTTTTTCTTCCTTTTTTTTCTCCCCTCTTTCCTTCCCTTCT CCCCCCGGAATGATTATCCACAAACATAAGGGATTTACCCGAGCCCTCTA TTTCTCATTGAGGATGCGTTGACGAGCAAGTGTTTCCAAATCAGACTGAC CGGTCCAATTCCCCTCCCCCCCTTCCCCCCTTTTCCCTCACATATACCGC TTCTAGAATCCCAGTAATTCCCCTTTCTACCTCACATCACACCACTCAAA CAGCCTTCATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACT GATCCCCCCTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCT CCGACTTGCCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCG GATGCGTCATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCAT CCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGG TGAAAAAGCAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATC ACACGGGGAAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTC AAAAAAGTAGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAA GGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTG AGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATG CATGGGACACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTT CGTCAGACCCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGC TACAAATGATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGG TTGCAGACTGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGT CGTGAGGGTGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGG CCAAAAACAAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATC GAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGT GTTGGAAATGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACT TAGATTTGTTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCA GCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCA GGAGGCGGACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGC AGTTTGGGAGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGG ACAAAGGCGTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTG AGGGCGGGAGTGTGAGAAGGCATGTGCGTGAGATAATTGTGTGTATTTAC TTCGGCGTGAGACGTTCCTTTTTCCATCCCATTTTGTCGATAGTAGCTAG TGGCAGCAATTTGTACCTAGCCACTTCCAAATTAATACTTACGTACGTGG AA
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Coding sequence (CDS) from alignment at chr4:1161988..1164289-

>NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica)
ATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACTGATCCCCC
CTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCTCCGACTTG
CCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCGGATGCGTC
ATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCATCCTAAGGC
CGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAG
CAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATCACACGGGG
AAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTCAAAAAAGT
AGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGG
CAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAG
AAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATGCATGGGAC
ACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTTCGTCAGAC
CCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGCTACAAATG
ATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGGTTGCAGAC
TGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGTCGTGAGGG
TGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGGCCAAAAAC
AAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATCGAGGCGCA
ACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAA
TGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACTTAGATTTG
TTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAA
GGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCAGGAGGCGG
ACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGCAGTTTGGG
AGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGGACAAAGGC
GTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTGA
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Synonyms
Publications