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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1161988..1164289 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04300.2 vs.
Match: EWM28807.1 (riboflavin biosynthesis protein [Nannochloropsis gaditana]) HSP 1 Score: 628.2 bits (1619), Expect = 1.600e-176 Identity = 304/376 (80.85%), Postives = 335/376 (89.10%), Query Frame = 0
Query: 5 EVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEATL 381
EV+E E PSY+E+DRKHMRRAL LA+ ALGKTRPNPVVGCVI+DQ G +VGEGFHPKAG+PHAEVFAL+EAG++ARGGT YVTLEPCNH GKTPPCVDALL AG+KKVVAGMVDPFPLVGGKGLARL + GVEVVVGCE+ KCQ LNRPFVHRV HGTPLGFLPLTY FVRP+P TVQLGDGGKAL+MIDA+VVDFNVKGEGLQTV L+ AGLLQDEVVR+VLANDL+ LP EWAK+KK +VRK+VLT++I Q AAV LEGRGVEV+ MPTDPLAVGKY+H L LLSALWLLCPEGAK AVKAGVVQDLWIH TLQEAD+LDGVDDPDFLGRQFGRPMK++VMSCDA+GTKACLLSLT+DD ATL
Sbjct: 69 EVDEESMAEIQEPSYSESDRKHMRRALHLAAQALGKTRPNPVVGCVILDQEGVVVGEGFHPKAGQPHAEVFALKEAGDRARGGTVYVTLEPCNHHGKTPPCVDALLEAGIKKVVAGMVDPFPLVGGKGLARLADNGVEVVVGCEEGKCQALNRPFVHRVQHGTPLGFLPLTYSRQDFVRPAPATVQLGDGGKALEMIDAIVVDFNVKGEGLQTVAALQTAGLLQDEVVRIVLANDLSALPVEWAKHKKASVRKVVLTTSIAGQEAAVEVLEGRGVEVIAMPTDPLAVGKYMHGLGLLSALWLLCPEGAKRAVKAGVVQDLWIHATLQEADDLDGVDDPDFLGRQFGRPMKMSVMSCDAVGTKACLLSLTIDDTATL 444
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG GCTCATCCACGAGCCCATTAAGTGCAACGAAATCCCAGTAATTCCCCTTT CTACCTCACATCACACCACTCAAACAGCCTTCATGATGGACCCTGAAGTC GAAGAGGCCCTTGGAAATGAAACTGATCCCCCCTCTTATACCGAAACTGA CCGTAAACACATGCGTCGCGCCCTCCGACTTGCCTCTTACGCGCTTGGCA AGACCCGCCCCAACCCCGTGGTCGGATGCGTCATCATCGACCAAAACGGA AAATTAGTCGGAGAGGGCTTCCATCCTAAGGCCGGAGAGCCTCATGCAGA AGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAGCAAGGGGAGGGACGGCAT ACGTGACGCTGGAGCCATGTAATCACACGGGGAAGACTCCTCCCTGTGTG GATGCCCTCCTTGCGGCAGGTGTCAAAAAAGTAGTAGCGGGCATGGTCGA CCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGGCAAGGCTGGAAGAGGGGG GTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAGAAGTGTCAGGAGTTGAAC CGGCCGTTTGTTCACAGGGTAATGCATGGGACACCGTTGGGGTTTTTGCC GTTGACCTACCGGGGGCATAGCTTCGTCAGACCCTCCCCTGATACGGTCC AACTGGGGGATGGGGGAAAGGCGCTACAAATGATTGATGCTGTAGTGGTG GACTTCAATGTGAAGGGTGAGGGGTTGCAGACTGTTACTACGCTTGAAAA GGCGGGTCTGCTGCAGGATGAGGTCGTGAGGGTGGTGTTGGCAAATGACT TAGCCGGGCTACCGAGCGAGTGGGCCAAAAACAAAAAAAAGACGGTGAGG AAAATTGTCCTGACTTCAAACATCGAGGCGCAACGAGCTGCTGTGGTAGG GTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAATGCCGACAGATCCCTTGG CTGTGGGCAAGTACTTGCATGACTTAGATTTGTTGTCGGCGTTATGGCTG TTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAAGGCGGGAGTGGTGCAGGA TTTGTGGATCCATGTGACGTTGCAGGAGGCGGACGAGCTTGATGGGGTGG ATGATCCCGATTTCTTGGGGAGGCAGTTTGGGAGGCCGATGAAGGTAGCG GTGATGAGTTGTGATGCGATTGGGACAAAGGCGTGCTTGTTGAGTTTGAC AGTGGATGATGAGGCGACGCTTTGAGGGCGGGAGTGTGAGAAGGCATGTG CGTGAGATAATTGTGTGTATTTACTTCGGCGTGAGACGTTCCTTTTTCCA TCCCATTTTGTCGATAGTAGCTAGTGGCAGCAATTTGTACCTAGCCACTT CCAAATTAATACTTACGTACGTGGAA back to topprotein sequence of NO04G04300.2 >NO04G04300.2-protein ID=NO04G04300.2-protein|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp MMDPEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCV IIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTG KTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKE KCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQM IDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKN KKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDL LSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFG RPMKVAVMSCDAIGTKACLLSLTVDDEATL* back to topmRNA from alignment at chr4:1161988..1164289- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica) GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA
CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG
GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC
ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG
AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC
TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA
TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC
AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA
GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT
CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT
CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC
TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA
CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG
GCTCATCCACGAGCCCATTAAGTGCAACGAGTAAGTATGAAGTATATGCA
AGAGCAGCGACGCCGGATACATCCCATATGTATATCCCCCCCTTTTTTTT
CTCTTCCTTTTTTTTCTTCCTTTTTTTTCTCCCCTCTTTCCTTCCCTTCT
CCCCCCGGAATGATTATCCACAAACATAAGGGATTTACCCGAGCCCTCTA
TTTCTCATTGAGGATGCGTTGACGAGCAAGTGTTTCCAAATCAGACTGAC
CGGTCCAATTCCCCTCCCCCCCTTCCCCCCTTTTCCCTCACATATACCGC
TTCTAGAATCCCAGTAATTCCCCTTTCTACCTCACATCACACCACTCAAA
CAGCCTTCATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACT
GATCCCCCCTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCT
CCGACTTGCCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCG
GATGCGTCATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCAT
CCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGG
TGAAAAAGCAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATC
ACACGGGGAAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTC
AAAAAAGTAGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAA
GGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTG
AGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATG
CATGGGACACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTT
CGTCAGACCCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGC
TACAAATGATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGG
TTGCAGACTGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGT
CGTGAGGGTGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGG
CCAAAAACAAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATC
GAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGT
GTTGGAAATGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACT
TAGATTTGTTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCA
GCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCA
GGAGGCGGACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGC
AGTTTGGGAGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGG
ACAAAGGCGTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTG
AGGGCGGGAGTGTGAGAAGGCATGTGCGTGAGATAATTGTGTGTATTTAC
TTCGGCGTGAGACGTTCCTTTTTCCATCCCATTTTGTCGATAGTAGCTAG
TGGCAGCAATTTGTACCTAGCCACTTCCAAATTAATACTTACGTACGTGG
AA back to topCoding sequence (CDS) from alignment at chr4:1161988..1164289- >NO04G04300.2 ID=NO04G04300.2|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica) ATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACTGATCCCCC CTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCTCCGACTTG CCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCGGATGCGTC ATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCATCCTAAGGC CGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAG CAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATCACACGGGG AAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTCAAAAAAGT AGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGG CAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAG AAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATGCATGGGAC ACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTTCGTCAGAC CCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGCTACAAATG ATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGGTTGCAGAC TGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGTCGTGAGGG TGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGGCCAAAAAC AAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATCGAGGCGCA ACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAA TGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACTTAGATTTG TTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAA GGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCAGGAGGCGG ACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGCAGTTTGGG AGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGGACAAAGGC GTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTGA back to top
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