NO04G04290.1, NO04G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04290.1
Unique NameNO04G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1930
Alignment locationchr4:1159893..1161921 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1159893..1161921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04290.1 vs.
Match: EWM26490.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 345.5 bits (885), Expect = 3.200e-91
Identity = 173/390 (44.36%), Postives = 232/390 (59.49%), Query Frame = 0 
Query:  145 WESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVS-----------NNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDG-EKFVYKPGAYANRECDPRWRL 523
            W S  GE+  NG P+H+KGV++FGFET   V HGL   T      FLR E FN +RLP S A AL  +   + +  +   L   T  +L+  +I +A   GI+++LDMHR  E+   ELWY  +YS D + + W+ LL+AF  RWN+  +DL NEPHG A W SG    DWN AAE +   L + HP+Y GL FVEG             NN     +WG +LEGV   P+D+  +      N+R+VYSPH YGP    QPYF+A ++P N+P IW   + F+E+ T  AVV+GEWGG Y NQ K++ D FA +L++ C+ D  +W LNPNS DTGGLLD D+ TP   +L +L  VQP P+ +   G +++   PGAYAN +CD   RL
Sbjct:   71 WTSEGGEILLNGQPFHLKGVSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEPNKKVNANTIEKE-LHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIPELWYDDKYSMDDVKEAWDNLLTAFGDRWNLFAIDLKNEPHGVATWGSGKATTDWNTAAEELATYLYKKHPQYKGLVFVEGTQLASAKHHKLDKNNK----WWGGDLEGVQEFPIDLGSDAL----NKRLVYSPHVYGPDAFVQPYFEAKNFPDNMPDIWKKQWAFVEEQTDRAVVVGEWGGRYENQDKIWQDSFAKFLVDECLEDTFYWCLNPNSGDTGGLLDYDFLTPMPKKLALLAKVQPHPTFITVKGSDQYCISPGAYANPKCDKGRRL 451
The following BLAST results are available for this feature:
BLAST of NO04G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26490.13.200e-9144.36cellulase 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04290NO04G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04290.1NO04G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04290.1.cds1NO04G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04290.1.cds2NO04G04290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04290.1 ID=NO04G04290.1|Name=NO04G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
GCCTTCGCCCCAGTACCATTAATGCGCACCATTCTAATTTGCCTTCTCTC
TTGATTTCTCCCTTCTCACCAGGACTCTTTCCCCGACACCAGGCGACGCG
AATTCCCTAGTGTACCAACATCCAAGCCATGGCTGTACGTCTTCTCTACG
CTTCGATCGCGGTCCTTCTATTTGTCCTGCCCATCATCGTCCTGTCCGTC
ACACCTATACGTCTGCTCCGAGGCGTGGCACAAGATCCCGACCTCGGTCT
CCTTGACAAGGACCCTGCCATCGAGGACAACGCATTAAATGAATACATCG
ACGATAATAGTAGCATACAATACTACATCGAGCCGGCTGGGATCCTGCAT
AGCAAAGGTGACACTAGCGGCACCGACGACGACGATCACAATGTCACAGG
CGACCCTCTGCGTCCTCTTGAACGAGCAGAGGTCCAACGCGGTCCTATCA
ACGGTGGTGACGACGATTCCAACGAACTCGTAGAGATCTCCATTCCCGCG
GCCGCTCCTATTGATAAGATGCTTAAAGCTATCAATTTCCGCAGGGATGA
CCTGCCACTGTGGGAATCCGTGCAAGGCGAAGTCCGGTTCAATGGGCTCC
CGTACCACATCAAAGGCGTAAATTGGTTTGGTTTTGAGACGGACACACGC
GTATTTCATGGGCTGGATGTACACACTTTGGGATTTTACTTGGATTTTTT
GAGAGCAGAAGATTTTAATCTGCTGCGTTTGCCCATTTCACTGGCAGCGG
CTCTTAATCTGGATTCGTACCCGAGCTATCACTATTTTCAAGATCCGGTC
TTGCGGGGAAAGACGGTGCGCCAGCTGCTAGAGATCGTGATTCATGAGGC
GGGTGCCCGTGGAATTATGGTGATTTTGGACATGCATCGGGCGCGGGAGA
ACGAAAAGTTTGAGCTTTGGTACACGAAGGAGTACTCCTATGACATGTTG
CTGGACGGGTGGAACTACTTGTTAAGCGCATTTAAACATCGGTGGAACAT
CATGGGCGTGGACCTGCTCAACGAGCCCCATGGTGCGGCAAGGTGGGAAT
CAGGAGACCCAGGCATAGATTGGAACCGCGCAGCAGAGAATATGACTATG
ACTCTGATGCAGGCGCATCCGGAGTACACCGGGCTCTTCTTCGTTGAAGG
AGTTTCGAACAACTACCCATACATTTGCTTCTGGGGTGCCAATCTAGAAG
GCGTGGCTCGGAGGCCTTTGGATGTGCGTGGGAACGGTAAATTTCCCAAT
GGGAACAGGCGCGTCGTATACTCTCCGCATACATACGGGCCGTCGGTGGA
CCAGCAGCCGTATTTTGACGCTCCCGACTATCCGCGCAATCTGCCGAAAA
TTTGGGACGCTTTGTTTGGTTTTTTGGAGCAGGCTACGGGGAATGCTGTG
GTCATAGGCGAGTGGGGTGGCTTTTATCACAACCAAACAAAGCTCTTTAT
CGACGAGTTTGCCCTGTACCTGCTTGAGCGGTGCATGTCGGACAACATTT
TCTGGGTGCTGAATCCGAATAGCGCTGACACGGGAGGCCTACTCGACAAC
GACTGGACTACGCCTAGGCGCCACCGTCTCAAGGTTTTACAGATCGTGCA
GCCTTCCCCGTCCCGGCTCTTTTTCGATGGCGAAAAGTTTGTTTACAAGC
CAGGGGCTTATGCAAACCGTGAGTGCGACCCACGCTGGAGGCTCTGGCTG
GAGCAGGAGCGGCAACGGTTGCATGAGGGTGGGTATGACGTGGAGTGGGA
GGAGGAAGGATTCACACCACTGGTGCAAAGCATGAGGCACTCACAGGAGC
AGAACATGAGAGAGCAGAAGGCGGATATTGTGAGGGAATGGGCTGCACAA
GAGGACATCTGAGAGATTAATTATCATGCGACACAAAAGATTTAAAATCG
AAGAAGCAAAACTGGTAAAGAAACAAAACG
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protein sequence of NO04G04290.1

>NO04G04290.1-protein ID=NO04G04290.1-protein|Name=NO04G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MAVRLLYASIAVLLFVLPIIVLSVTPIRLLRGVAQDPDLGLLDKDPAIED
NALNEYIDDNSSIQYYIEPAGILHSKGDTSGTDDDDHNVTGDPLRPLERA
EVQRGPINGGDDDSNELVEISIPAAAPIDKMLKAINFRRDDLPLWESVQG
EVRFNGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLR
LPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVIL
DMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEP
HGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYIC
FWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPD
YPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLE
RCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFD
GEKFVYKPGAYANRECDPRWRLWLEQERQRLHEGGYDVEWEEEGFTPLVQ
SMRHSQEQNMREQKADIVREWAAQEDI*
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mRNA from alignment at chr4:1159893..1161921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04290.1 ID=NO04G04290.1|Name=NO04G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at chr4:1159893..1161921+ (Nannochloropsis oceanica)
GCCTTCGCCCCAGTACCATTAATGCGCACCATTCTAATTTGCCTTCTCTC
TTGATTTCTCCCTTCTCACCAGGACTCTTTCCCCGACACCAGGCGACGCG
AATTCCCTAGTGTACCAACATCCAAGCCATGGCTGTACGTCTTCTCTACG
CTTCGATCGCGGTCCTTCTATTTGTCCTGCCCATCATCGTCCTGTCCGTC
ACACCTATACGTCTGCTCCGAGGCGTGGCACAAGATCCCGACCTCGGTCT
CCTTGACAAGGACCCTGCCATCGAGGACAACGCATTAAATGAATACATCG
ACGATAATAGTAGCATACAATACTACATCGAGCCGGCTGGGATCCTGCAT
AGCAAAGGTGACACTAGCGGCACCGACGACGACGATCACAATGTCACAGG
CGACCCTCTGCGTCCTCTTGAACGAGCAGAGGTCCAACGCGGTCCTATCA
ACGGTGGTGACGACGATTCCAACGAACTCGTAGAGATCTCCATTCCCGCG
GCCGCTCCTATTGATAAGATGCTTAAAGCTATCAATTTCCGCAGGGATGA
CCTGCCACTGTGGGAATCCGTGCAAGGCGAAGTCCGGTTCAATGGGCTCC
CGTACCACATCAAAGGCGTAAATTGGTTTGGTTTTGAGACGGACACACGC
GTATTTCATGGGCTGGATGTACACACTTTGGGATTTTACTTGGATTTTTT
GAGAGCAGAAGATTTTAATCTGCTGCGTTTGCCCATTTCACTGGCAGCGG
CTCTTAATCTGGATTCGTACCCGAGCTATCACTATTTTCAAGATCCGGTC
TTGCGGGGAAAGACGGTGCGCCAGCTGCTAGAGATCGTGATTCATGAGGC
GGGTGCCCGTGGAATTATGGTGATTTTGGACATGCATCGGGCGCGGGAGA
ACGAAAAGTTTGAGCTTTGGTACACGAAGGAGTACTCCTATGACATGTTG
CTGGACGGGTGGAACTACTTGTTAAGCGCATTTAAACATCGGTGGAACAT
CATGGGCGTGGACCTGCTCAACGAGCCCCATGGTGCGGCAAGGTGGGAAT
CAGGAGACCCAGGCATAGATTGGAACCGCGCAGCAGAGAATATGACTATG
ACTCTGATGCAGGCGCATCCGGAGTACACCGGGCTCTTCTTCGTTGAAGG
AGTTTCGAACAACTACCCATACATTTGCTTCTGGGGTGCCAATCTAGAAG
GCGTGGCTCGGAGGCCTTTGGATGTGCGTGGGAACGGTAAATTTCCCAAT
GGGAACAGGCGCGTCGTATACTCTCCGCATACATACGGGCCGTCGGTGGA
CCAGCAGCCGTATTTTGACGCTCCCGACTATCCGCGCAATCTGCCGAAAA
TTTGGGACGCTTTGTTTGGTTTTTTGGAGCAGGCTACGGGGAATGCTGTG
GTCATAGGCGAGTGGGGTGGCTTTTATCACAACCAAACAAAGCTCTTTAT
CGACGAGTTTGCCCTGTACCTGCTTGAGCGGTGCATGTCGGACAACATTT
TCTGGGTGCTGAATCCGAATGTAAGTTTCTGGGCGAGGGAGGTTTGGTAG
GAATTATGAACACTAAGTATTTTTGTGTGCATTTGTCACGCGTATGACAA
CTTTTGCATGCATGTACAGAGCGCTGACACGGGAGGCCTACTCGACAACG
ACTGGACTACGCCTAGGCGCCACCGTCTCAAGGTTTTACAGATCGTGCAG
CCTTCCCCGTCCCGGCTCTTTTTCGATGGCGAAAAGTTTGTTTACAAGCC
AGGGGCTTATGCAAACCGTGAGTGCGACCCACGCTGGAGGCTCTGGCTGG
AGCAGGAGCGGCAACGGTTGCATGAGGGTGGGTATGACGTGGAGTGGGAG
GAGGAAGGATTCACACCACTGGTGCAAAGCATGAGGCACTCACAGGAGCA
GAACATGAGAGAGCAGAAGGCGGATATTGTGAGGGAATGGGCTGCACAAG
AGGACATCTGAGAGATTAATTATCATGCGACACAAAAGATTTAAAATCGA
AGAAGCAAAACTGGTAAAGAAACAAAACG
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Coding sequence (CDS) from alignment at chr4:1159893..1161921+

>NO04G04290.1 ID=NO04G04290.1|Name=NO04G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr4:1159893..1161921+ (Nannochloropsis oceanica)
ATGGCTGTACGTCTTCTCTACGCTTCGATCGCGGTCCTTCTATTTGTCCT
GCCCATCATCGTCCTGTCCGTCACACCTATACGTCTGCTCCGAGGCGTGG
CACAAGATCCCGACCTCGGTCTCCTTGACAAGGACCCTGCCATCGAGGAC
AACGCATTAAATGAATACATCGACGATAATAGTAGCATACAATACTACAT
CGAGCCGGCTGGGATCCTGCATAGCAAAGGTGACACTAGCGGCACCGACG
ACGACGATCACAATGTCACAGGCGACCCTCTGCGTCCTCTTGAACGAGCA
GAGGTCCAACGCGGTCCTATCAACGGTGGTGACGACGATTCCAACGAACT
CGTAGAGATCTCCATTCCCGCGGCCGCTCCTATTGATAAGATGCTTAAAG
CTATCAATTTCCGCAGGGATGACCTGCCACTGTGGGAATCCGTGCAAGGC
GAAGTCCGGTTCAATGGGCTCCCGTACCACATCAAAGGCGTAAATTGGTT
TGGTTTTGAGACGGACACACGCGTATTTCATGGGCTGGATGTACACACTT
TGGGATTTTACTTGGATTTTTTGAGAGCAGAAGATTTTAATCTGCTGCGT
TTGCCCATTTCACTGGCAGCGGCTCTTAATCTGGATTCGTACCCGAGCTA
TCACTATTTTCAAGATCCGGTCTTGCGGGGAAAGACGGTGCGCCAGCTGC
TAGAGATCGTGATTCATGAGGCGGGTGCCCGTGGAATTATGGTGATTTTG
GACATGCATCGGGCGCGGGAGAACGAAAAGTTTGAGCTTTGGTACACGAA
GGAGTACTCCTATGACATGTTGCTGGACGGGTGGAACTACTTGTTAAGCG
CATTTAAACATCGGTGGAACATCATGGGCGTGGACCTGCTCAACGAGCCC
CATGGTGCGGCAAGGTGGGAATCAGGAGACCCAGGCATAGATTGGAACCG
CGCAGCAGAGAATATGACTATGACTCTGATGCAGGCGCATCCGGAGTACA
CCGGGCTCTTCTTCGTTGAAGGAGTTTCGAACAACTACCCATACATTTGC
TTCTGGGGTGCCAATCTAGAAGGCGTGGCTCGGAGGCCTTTGGATGTGCG
TGGGAACGGTAAATTTCCCAATGGGAACAGGCGCGTCGTATACTCTCCGC
ATACATACGGGCCGTCGGTGGACCAGCAGCCGTATTTTGACGCTCCCGAC
TATCCGCGCAATCTGCCGAAAATTTGGGACGCTTTGTTTGGTTTTTTGGA
GCAGGCTACGGGGAATGCTGTGGTCATAGGCGAGTGGGGTGGCTTTTATC
ACAACCAAACAAAGCTCTTTATCGACGAGTTTGCCCTGTACCTGCTTGAG
CGGTGCATGTCGGACAACATTTTCTGGGTGCTGAATCCGAATAGCGCTGA
CACGGGAGGCCTACTCGACAACGACTGGACTACGCCTAGGCGCCACCGTC
TCAAGGTTTTACAGATCGTGCAGCCTTCCCCGTCCCGGCTCTTTTTCGAT
GGCGAAAAGTTTGTTTACAAGCCAGGGGCTTATGCAAACCGTGAGTGCGA
CCCACGCTGGAGGCTCTGGCTGGAGCAGGAGCGGCAACGGTTGCATGAGG
GTGGGTATGACGTGGAGTGGGAGGAGGAAGGATTCACACCACTGGTGCAA
AGCATGAGGCACTCACAGGAGCAGAACATGAGAGAGCAGAAGGCGGATAT
TGTGAGGGAATGGGCTGCACAAGAGGACATCTGA
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Synonyms
Publications