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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1152311..1155181 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04240.1 vs.
Match: EWM28666.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 593.2 bits (1528), Expect = 5.600e-166 Identity = 288/361 (79.78%), Postives = 322/361 (89.20%), Query Frame = 0
Query: 1 MVLLNLINNIAHIPVFEDVCYYNFFFWAWFLGPLLGGLVFLHDLTTGFFFSIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDFRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSIMGVTCGLPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAKWGQGSAPVGVS 362
M L+N NN+AHIPVFED+CYYNFFFWAWF GPLLG LVFLHD TTGFFFSIFYV+PS DKV+ ITGCDTGFGK+LAL L KGFKVYA+CL Q++AD LKKEC+AL T+ILDVTKEDQVA V A + AA+PQG+FALVNNAGVSRAGLIDWLN+SDFRFCMEVNYF++VSVTKAFLPSLKKSKGR+IMMSS GV CG PVT AYS+SK A+E+F+SALRQELR WGITVSTINPGFHRTEIN NA+ LK TFEKAP+E+QE+YGE+YL A + A TR+TET ALDPKNVIRAY+HAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGE+ AYYASTT MRV+RGA+W QG APVG+S
Sbjct: 1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMS 361
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04240.1 ID=NO04G04240.1|Name=NO04G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2687bp
TAAAAACGGTTATTCTTCAAGTAGAATCTAATCTGCCCCTCACACTCACG
CAATTGCATGCCCCAAGCATAACATAAAAACACGGGCAAGGCTGTCCTAA
ACTTTTGTCCGACCTGGTTCGGTGCACGCACGTCCTTTCGAGGGCCCGTT
CTACGTCGCCACCAAGCAGCCACCACAACCAGACAAGCATGGTATTATTG
AACTTGATCAACAATATAGCACATATCCCCGTGTTTGAAGACGTATGCTA
CTACAACTTCTTCTTCTGGGCCTGGTTTTTGGGACCTCTCCTCGGCGGCC
TCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTCTCGATATTTTAC
GTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGGATGTGACACGGG
TTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAGGCTTCAAGGTTT
ACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTCAAGAAGGAGTGC
GAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGAGGATCAAGTCGC
TCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGGGGCTCTTCGCCC
TTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATTGATTGGCTTAAC
ATCTCCGACTTTCGGTTTTGCATGGAAGTGAACTACTTCGCCATGGTCTC
GGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCAAGGGTCGGGTGA
TCATGATGTCCTCGATAATGGGCGTGACATGCGGATTACCCGTCACTAGT
GCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTCCTCGGCCCTGCG
ACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCATCAACCCCGGCT
TTCACAGAACTGAGATCAATCGCAACGCCTCGGATAACTTGAAACTGACA
TTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGGAGAGAAGTACCT
GCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGACCAATGCCCTGG
ACCCCAAGAACGTCATTCGGGCCTACATCCACGCCATCACCTCCACCCGA
CCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGGCCTCTTCCCGTT
CTTGCAGATCTTCCCCTTGCGGGTAGGAGAAGTAATAGCTTATTACGCGT
CGACGACGCCCGAGATGCGTGTAATTCGTGGGGCGAAATGGGGCCAGGGC
TCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGACTCAAAATGTTTA
GAATGAACTTGAAAAGGATCGGCATATAGGATAGTAGATTCTAGTTTGCC
TTCTACTTCAACTTCCTCCTCCTCCTTTTCCTTCTTCTCCCGCTCCTCCT
CTTTTCCCTCCTCCTCTTTCTTCTCCTACTCCTACTCCCACTCCTAATCT
CACTTCTACTCCTCCTTCCCCTCCTCCTCCTCTTACTTCTTTTATTCGTC
ATCTTCGTCGTCGCCATTCCCATCGCTGCCAATGGAGGTGGTGTTAGAGC
CTTTTGAACAAAAAGGACATAAAAATACATTAGGAAAAGAGGTGTGCATG
CATTGGTTCATTCCTCTACTCGACAAACACACAGCAAGAAGGCGACGGAC
GAAATAATATTTACACGAAGGAAAGAAATGCGTTACCACTTTTCCTACAT
TTTCTTTCATGCATTTCATCATCGGTTTTGTGTGGGCAGGTGTTCCCTCT
CTGTCTTTCTCTCTCGAGCGCTCTCAGATGCTGTTGCATAAATGTTTTCG
ATAGCTCCTGCTGCTGCGTTGCTTTCGTTCTTTTTGTGATCAATTGTGCT
TTTGTGTGTCTCACATGTATTCATCCATAGATGGTAAATCGCTCTTCTCT
TTTGTTTCTCCGGCTCCTATTTGTGAAAGATGCACGTGCTTATTTTGCTC
TCCCTCCTATCTGTCCCTCCCTCCCTTCCATCCCTCCCTCTTTTACTCGG
TCCAGGCTGGCCTGGTAGACAAAGGCAAGATGACCCCTGCTTGCCGTCTC
GGCATTGCAGAAGAATATGAACATGACTTAATTCGCCTTCCCACCCCCAC
CATCTTGTTTATATCACTGCTGCCATTGCCGCTGCTACTGTTGCTGCCGC
TTTTATCACTCCTGTTTTTCATGGCAGAGCCAGCGGCAGATATTCCCCTT
CCGCCATATCCATATCCAGACGATTCCACCGGTGATATAATAGGCTGCCG
CCGCTGTTGCTGTTGCTGTCGCTGCTGTTGTAGCAGTCCTGTTGCCTGAT
GTGCATAGAGCAGCATCCAGGGGTGGCGCATCGCCTCACTCAAAGTCATC
CTTCTCTCCGTCTCCACCACCAACAACTTACTGATAAAATCCTTCGCAGC
CTCCGAGACATACGTGGGAAAATTCAACCTCCCCTCCAAGATGTTCGCAA
ACATGGTCCCCTCCTGCTCCTTCAAGGCCTCCCCCTCCTCGTCCTCGTCC
TCCTGGAACATCACTGGGCTCGACTTTCGAAACGGGGTCCGGCCCACCAG
AAACTCGTAGCACAGCACCCCCACCGACCACGTGTCTACACTCTCCGCAT
ATCCCCTCCCGTCATGCCGCAGCATCTCAGGACTGACGTAATCCGGCGTC
CCACACAAAGTCTTCCTCAATCCTCCCTCCCCCCCCC back to topprotein sequence of NO04G04240.1 >NO04G04240.1-protein ID=NO04G04240.1-protein|Name=NO04G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MVLLNLINNIAHIPVFEDVCYYNFFFWAWFLGPLLGGLVFLHDLTTGFFF
SIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADAL
KKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLI
DWLNISDFRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSIMGVTCGL
PVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDN
LKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHAI
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAK
WGQGSAPVGVSPAVAATQNV* back to topmRNA from alignment at chr4:1152311..1155181+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04240.1 ID=NO04G04240.1|Name=NO04G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2871bp|location=Sequence derived from alignment at chr4:1152311..1155181+ (Nannochloropsis oceanica)
TAAAAACGGTTATTCTTCAAGTAGAATCTAATCTGCCCCTCACACTCACG
CAATTGCATGCCCCAAGCATAACATAAAAACACGGGCAAGGCTGTCCTAA
ACTTTTGTCCGACCTGGTTCGGTGCACGCACGTCCTTTCGAGGGCCCGTT
CTACGTCGCCACCAAGCAGCCACCACAACCAGACAAGCATGGTATTATTG
AACTTGATCAACAATATAGCACATATCCCCGTGTTTGAAGACGTATGCTA
CTACAACTTCTTCTTCTGGGCCTGGTTTTTGGGACCTCTCCTCGGCGGCC
TCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTCTCGATATTTTAC
GTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGGATGTGACACGGG
TTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAGGCTTCAAGGTTT
ACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTCAAGAAGGAGGTG
AGCTTGGAACCCGAAGTGGGGGGGGATCCTTCATTCTCTCTCTTTTATCA
TATTGATAGCTGACATCTTCTCAAATTCTACTCTTCCCCGTGTCTTCCTC
CCCCTCCCTCCGCTCACGTCGATTATCTTCCCTCTTTGATCAACCGCTCC
GTCCCTCCCTTTCCCCGTTTCCACGAAATAGTGCGAAGCCTTGCACACCG
TCATCCTGGACGTGACGAAGGAGGATCAAGTCGCTCGAGTGGTCGCGGAA
GTGGACGCTGCTAACCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGG
GGTGTCTCGCGCGGGACTGATTGATTGGCTTAACATCTCCGACTTTCGGT
TTTGCATGGAAGTGAACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTC
CTCCCTTCCTTGAAGAAGAGCAAGGGTCGGGTGATCATGATGTCCTCGAT
AATGGGCGTGACATGCGGATTACCCGTCACTAGTGCTTATTCTGCTTCGA
AGCGTGCGGTTGAAATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCT
TGGGGCATCACTGTCTCTACCATCAACCCCGGCTTTCACAGAACTGAGAT
CAATCGCAACGCCTCGGATAACTTGAAACTGACATTTGAGAAAGCCCCGC
AAGAGGTTCAGGAGCAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCT
GCGATGACCCGCTATACTGAGACCAATGCCCTGGACCCCAAGAACGTCAT
TCGGGCCTACATCCACGCCATCACCTCCACCCGACCTAAGGTTCAGTACC
GTGTCGGTATTGATGCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCC
TTGCGGGTAGGAGAAGTAATAGCTTATTACGCGTCGACGACGCCCGAGAT
GCGTGTAATTCGTGGGGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTG
TATCCCCTGCGGTGGCAGCGACTCAAAATGTTTAGAATGAACTTGAAAAG
GATCGGCATATAGGATAGTAGATTCTAGTTTGCCTTCTACTTCAACTTCC
TCCTCCTCCTTTTCCTTCTTCTCCCGCTCCTCCTCTTTTCCCTCCTCCTC
TTTCTTCTCCTACTCCTACTCCCACTCCTAATCTCACTTCTACTCCTCCT
TCCCCTCCTCCTCCTCTTACTTCTTTTATTCGTCATCTTCGTCGTCGCCA
TTCCCATCGCTGCCAATGGAGGTGGTGTTAGAGCCTTTTGAACAAAAAGG
ACATAAAAATACATTAGGAAAAGAGGTGTGCATGCATTGGTTCATTCCTC
TACTCGACAAACACACAGCAAGAAGGCGACGGACGAAATAATATTTACAC
GAAGGAAAGAAATGCGTTACCACTTTTCCTACATTTTCTTTCATGCATTT
CATCATCGGTTTTGTGTGGGCAGGTGTTCCCTCTCTGTCTTTCTCTCTCG
AGCGCTCTCAGATGCTGTTGCATAAATGTTTTCGATAGCTCCTGCTGCTG
CGTTGCTTTCGTTCTTTTTGTGATCAATTGTGCTTTTGTGTGTCTCACAT
GTATTCATCCATAGATGGTAAATCGCTCTTCTCTTTTGTTTCTCCGGCTC
CTATTTGTGAAAGATGCACGTGCTTATTTTGCTCTCCCTCCTATCTGTCC
CTCCCTCCCTTCCATCCCTCCCTCTTTTACTCGGTCCAGGCTGGCCTGGT
AGACAAAGGCAAGATGACCCCTGCTTGCCGTCTCGGCATTGCAGAAGAAT
ATGAACATGACTTAATTCGCCTTCCCACCCCCACCATCTTGTTTATATCA
CTGCTGCCATTGCCGCTGCTACTGTTGCTGCCGCTTTTATCACTCCTGTT
TTTCATGGCAGAGCCAGCGGCAGATATTCCCCTTCCGCCATATCCATATC
CAGACGATTCCACCGGTGATATAATAGGCTGCCGCCGCTGTTGCTGTTGC
TGTCGCTGCTGTTGTAGCAGTCCTGTTGCCTGATGTGCATAGAGCAGCAT
CCAGGGGTGGCGCATCGCCTCACTCAAAGTCATCCTTCTCTCCGTCTCCA
CCACCAACAACTTACTGATAAAATCCTTCGCAGCCTCCGAGACATACGTG
GGAAAATTCAACCTCCCCTCCAAGATGTTCGCAAACATGGTCCCCTCCTG
CTCCTTCAAGGCCTCCCCCTCCTCGTCCTCGTCCTCCTGGAACATCACTG
GGCTCGACTTTCGAAACGGGGTCCGGCCCACCAGAAACTCGTAGCACAGC
ACCCCCACCGACCACGTGTCTACACTCTCCGCATATCCCCTCCCGTCATG
CCGCAGCATCTCAGGACTGACGTAATCCGGCGTCCCACACAAAGTCTTCC
TCAATCCTCCCTCCCCCCCCC back to topCoding sequence (CDS) from alignment at chr4:1152311..1155181+ >NO04G04240.1 ID=NO04G04240.1|Name=NO04G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr4:1152311..1155181+ (Nannochloropsis oceanica)
ATGGTATTATTGAACTTGATCAACAATATAGCACATATCCCCGTGTTTGA
AGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTTGGGACCTC
TCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTC
TCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGG
ATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAG
GCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTC
AAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGA
GGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGG
GGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATT
GATTGGCTTAACATCTCCGACTTTCGGTTTTGCATGGAAGTGAACTACTT
CGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCA
AGGGTCGGGTGATCATGATGTCCTCGATAATGGGCGTGACATGCGGATTA
CCCGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTC
CTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCA
TCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAAC
TTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGG
AGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGA
CCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCATC
ACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGG
CCTCTTCCCGTTCTTGCAGATCTTCCCCTTGCGGGTAGGAGAAGTAATAG
CTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGGGCGAAA
TGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGAC
TCAAAATGTTTAG back to top
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