NO04G04230.1, NO04G04230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04230.1
Unique NameNO04G04230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr4:1150594..1151703 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1150594..1151703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04230.1 vs.
Match: EWM28695.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 604.7 bits (1558), Expect = 1.900e-169
Identity = 280/360 (77.78%), Postives = 321/360 (89.17%), Query Frame = 0 
Query:    1 MGSFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAKGAENMTTECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYVLVNNAGIAKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGLKPVGKAMEAE 361
            MG  L+FWNNLCHIDLLEEWIWYSYF GAWLLGP +AFLIV YD  SGF FP+WH+ PS DK +FITGCD+GFG++LA+ LAQKGF+VYAACLTA G E +  EC+ V+T++LDVT  +QVQ AA RVD+ENP+GLY LVNNAG+AKSGLIDWF +SDFR CMEVN+FGV++VTKAFLPL+KR KGRIVVVSSVAGVSCGYPLS PYSASKHAVELFAS+LRQE+R WGIKVSTINPGFHRTEMN VAV+GLE CW+KV P IQA+YG SYFEGC++FV+ HTE+VVFDP+NVVRA+EHAVTCTRPR+QYRVGLDAKYGLVWTQIFPLR+GEK+IYALTTNKKMRSIVGL    +A +A+
Sbjct:    1 MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQ 360
The following BLAST results are available for this feature:
BLAST of NO04G04230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28695.11.900e-16977.78retinol retinaldehyde reductase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04230NO04G04230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04230.1NO04G04230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04230.1.cds1NO04G04230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04230.1 ID=NO04G04230.1|Name=NO04G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCT
GGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCC
CCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTC
TTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCAC
GGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGA
AGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGCGCGGAGAAT
ATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAA
GGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCC
AAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTG
ATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTA
TTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGC
GCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGC
TACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTT
TGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGA
CTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAG
GGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTA
TGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGAAGCATACGG
AGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCC
GTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAA
GTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAA
TCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTC
AAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGGGCAAGCAAG
GGAGATATAA
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protein sequence of NO04G04230.1

>NO04G04230.1-protein ID=NO04G04230.1-protein|Name=NO04G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MGSFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFF
FPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAKGAEN
MTTECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYVLVNNAGIAKSGL
IDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCG
YPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQ
GLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHA
VTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGL
KPVGKAMEAEDSRGQAREI*
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mRNA from alignment at chr4:1150594..1151703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04230.1 ID=NO04G04230.1|Name=NO04G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr4:1150594..1151703- (Nannochloropsis oceanica)
ATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCT
GGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCC
CCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTC
TTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCAC
GGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGA
AGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGCGCGGAGAAT
ATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAA
GGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCC
AAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTG
ATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTA
TTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGC
GCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGC
TACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTT
TGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGA
CTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAG
GGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTA
TGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGAAGCATACGG
AGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCC
GTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAA
GTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAA
TCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTC
AAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGGGCAAGCAAG
GGAGATATAA
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Coding sequence (CDS) from alignment at chr4:1150594..1151703-

>NO04G04230.1 ID=NO04G04230.1|Name=NO04G04230.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr4:1150594..1151703- (Nannochloropsis oceanica)
ATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCT
GGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCC
CCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTC
TTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCAC
GGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGA
AGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGCGCGGAGAAT
ATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAA
GGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCC
AAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTG
ATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTA
TTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGC
GCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGC
TACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTT
TGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGA
CTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAG
GGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTA
TGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGAAGCATACGG
AGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCC
GTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAA
GTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAA
TCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTC
AAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGGGCAAGCAAG
GGAGATATAA
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Synonyms
Publications