NO04G04140.1, NO04G04140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04140.1
Unique NameNO04G04140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length921
Alignment locationchr4:1122420..1123427 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1122420..1123427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04140.1 vs.
Match: EWM28810.1 (Phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 2.700e-73
Identity = 180/331 (54.38%), Postives = 216/331 (65.26%), Query Frame = 0 
Query:   13 LLLLVAVTSTSAL-----GSSRTTTAFIPPRPRSFSPSSALSLSIKSRTL-TPPRHALSTPPPQAAWRPFPTCSHALPSNLLQDLSGATLVGIASAVWLKLWTTLATS-----------------------------DPSARFFAAAVPLLQAIAVIASGLAKEQPDAPT---LTNATTIKMKPSGLVAAISRSGNPAEVLRGPLIYVIVLLLSTLSFWRESMVGLVAISQMAAGDGMADIVGRRWGEKKWAFSSTKSYAGTGAFVVSGFLVSVGLIAWFHLWGLVPALTLGVVGRVGVISVLCAMVELVPWGDDNVSVPVVASVLATALL 306
            LLL V+V+S +       G  +T      PRP   SP S+ S +  S  L T P  +      + +   F T   ALP    QDL GA LVG+ASAVWLKLWT+LA S                             + +AR FAA VPLLQ +A+IASGLAK    A     +    +   KPSGLVAAISRSGNPAEVLRGPLIYV++LLL+T+ FWRES+VGLVA++QMAAGDGMADIVGRRWG +KW+FSSTKSYAG+ AF +SGF+VSV LIAWF+ WGLVPALT GV  +V +IS+LCA VELVPWGDDN+ VP+VAS LA+ LL
Sbjct:   14 LLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL 344
The following BLAST results are available for this feature:
BLAST of NO04G04140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28810.12.700e-7354.38Phosphatidate cytidylyltransferase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04140NO04G04140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04140.1NO04G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04140.1.cds1NO04G04140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04140.1.cds2NO04G04140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04140.1 ID=NO04G04140.1|Name=NO04G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
ATGACGAGCATCAATCGAGTCCAGGCCTCCCTGCAGCTCCTCCTCCTGGT
AGCAGTTACCAGCACCAGTGCCCTGGGCAGTAGTAGAACTACCACAGCTT
TTATCCCACCCCGGCCACGCTCCTTTTCCCCTTCCTCTGCCCTTTCCCTC
TCAATCAAATCCCGAACCCTCACCCCTCCAAGACATGCACTATCGACACC
ACCCCCTCAAGCAGCCTGGAGACCCTTCCCCACTTGTTCGCATGCCCTTC
CCTCCAACCTTCTCCAGGATCTGAGTGGGGCAACGTTGGTCGGGATCGCC
TCCGCGGTTTGGTTGAAATTGTGGACTACCCTGGCAACGTCCGACCCCAG
CGCCCGCTTTTTCGCTGCAGCGGTGCCTTTGCTCCAAGCCATCGCTGTTA
TCGCTTCGGGCTTGGCAAAGGAGCAGCCAGACGCTCCGACCCTCACGAAT
GCTACTACGATTAAAATGAAGCCCAGTGGTCTCGTCGCTGCAATCTCCCG
AAGCGGCAATCCAGCGGAGGTCCTGCGTGGGCCACTGATATACGTCATTG
TTCTCCTTCTGTCCACCCTTAGTTTTTGGCGCGAGAGCATGGTGGGGCTG
GTGGCAATCAGTCAGATGGCAGCAGGGGATGGAATGGCCGATATCGTCGG
GAGGAGATGGGGAGAGAAAAAGTGGGCGTTCAGTAGTACGAAAAGTTATG
CAGGAACGGGGGCGTTTGTGGTGTCTGGATTCTTGGTGAGTGTGGGGTTG
ATTGCCTGGTTTCATTTATGGGGCTTGGTCCCAGCCTTGACGCTTGGGGT
GGTAGGACGGGTGGGGGTGATTAGTGTGTTGTGTGCGATGGTGGAGCTGG
TGCCCTGGGGGGATGATAATGTGAGTGTCCCCGTGGTCGCGTCGGTGTTG
GCGACGGCTCTGTTGATGTAG
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protein sequence of NO04G04140.1

>NO04G04140.1-protein ID=NO04G04140.1-protein|Name=NO04G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MTSINRVQASLQLLLLVAVTSTSALGSSRTTTAFIPPRPRSFSPSSALSL
SIKSRTLTPPRHALSTPPPQAAWRPFPTCSHALPSNLLQDLSGATLVGIA
SAVWLKLWTTLATSDPSARFFAAAVPLLQAIAVIASGLAKEQPDAPTLTN
ATTIKMKPSGLVAAISRSGNPAEVLRGPLIYVIVLLLSTLSFWRESMVGL
VAISQMAAGDGMADIVGRRWGEKKWAFSSTKSYAGTGAFVVSGFLVSVGL
IAWFHLWGLVPALTLGVVGRVGVISVLCAMVELVPWGDDNVSVPVVASVL
ATALLM*
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mRNA from alignment at chr4:1122420..1123427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04140.1 ID=NO04G04140.1|Name=NO04G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at chr4:1122420..1123427+ (Nannochloropsis oceanica)
ATGACGAGCATCAATCGAGTCCAGGCCTCCCTGCAGCTCCTCCTCCTGGT
AGCAGTTACCAGCACCAGTGCCCTGGGCAGTAGTAGAACTACCACAGCTT
TTATCCCACCCCGGCCACGCTCCTTTTCCCCTTCCTCTGCCCTTTCCCTC
TCAATCAAATCCCGAACCCTCACCCCTCCAAGACATGCACTATCGACACC
ACCCCCTCAAGCAGCCTGGAGACCCTTCCCCACTTGTTCGCATGCCCTTC
CCTCCAACCTTCTCCAGGATCTGAGTGGGGCAACGTTGGTCGGGATCGCC
TCCGCGGTTTGGTTGAAATTGTGGACTACCCTGGCAACGTCCGGTAAGGT
TGATTCCAAGGACTCTCGCAAACTTATCCACTGCGGCTCCGGTCCACTGT
TTATGTTGTGTTGGCCCTTTTTCTCCGCAGACCCCAGCGCCCGCTTTTTC
GCTGCAGCGGTGCCTTTGCTCCAAGCCATCGCTGTTATCGCTTCGGGCTT
GGCAAAGGAGCAGCCAGACGCTCCGACCCTCACGAATGCTACTACGATTA
AAATGAAGCCCAGTGGTCTCGTCGCTGCAATCTCCCGAAGCGGCAATCCA
GCGGAGGTCCTGCGTGGGCCACTGATATACGTCATTGTTCTCCTTCTGTC
CACCCTTAGTTTTTGGCGCGAGAGCATGGTGGGGCTGGTGGCAATCAGTC
AGATGGCAGCAGGGGATGGAATGGCCGATATCGTCGGGAGGAGATGGGGA
GAGAAAAAGTGGGCGTTCAGTAGTACGAAAAGTTATGCAGGAACGGGGGC
GTTTGTGGTGTCTGGATTCTTGGTGAGTGTGGGGTTGATTGCCTGGTTTC
ATTTATGGGGCTTGGTCCCAGCCTTGACGCTTGGGGTGGTAGGACGGGTG
GGGGTGATTAGTGTGTTGTGTGCGATGGTGGAGCTGGTGCCCTGGGGGGA
TGATAATGTGAGTGTCCCCGTGGTCGCGTCGGTGTTGGCGACGGCTCTGT
TGATGTAG
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Coding sequence (CDS) from alignment at chr4:1122420..1123427+

>NO04G04140.1 ID=NO04G04140.1|Name=NO04G04140.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr4:1122420..1123427+ (Nannochloropsis oceanica)
ATGACGAGCATCAATCGAGTCCAGGCCTCCCTGCAGCTCCTCCTCCTGGT
AGCAGTTACCAGCACCAGTGCCCTGGGCAGTAGTAGAACTACCACAGCTT
TTATCCCACCCCGGCCACGCTCCTTTTCCCCTTCCTCTGCCCTTTCCCTC
TCAATCAAATCCCGAACCCTCACCCCTCCAAGACATGCACTATCGACACC
ACCCCCTCAAGCAGCCTGGAGACCCTTCCCCACTTGTTCGCATGCCCTTC
CCTCCAACCTTCTCCAGGATCTGAGTGGGGCAACGTTGGTCGGGATCGCC
TCCGCGGTTTGGTTGAAATTGTGGACTACCCTGGCAACGTCCGACCCCAG
CGCCCGCTTTTTCGCTGCAGCGGTGCCTTTGCTCCAAGCCATCGCTGTTA
TCGCTTCGGGCTTGGCAAAGGAGCAGCCAGACGCTCCGACCCTCACGAAT
GCTACTACGATTAAAATGAAGCCCAGTGGTCTCGTCGCTGCAATCTCCCG
AAGCGGCAATCCAGCGGAGGTCCTGCGTGGGCCACTGATATACGTCATTG
TTCTCCTTCTGTCCACCCTTAGTTTTTGGCGCGAGAGCATGGTGGGGCTG
GTGGCAATCAGTCAGATGGCAGCAGGGGATGGAATGGCCGATATCGTCGG
GAGGAGATGGGGAGAGAAAAAGTGGGCGTTCAGTAGTACGAAAAGTTATG
CAGGAACGGGGGCGTTTGTGGTGTCTGGATTCTTGGTGAGTGTGGGGTTG
ATTGCCTGGTTTCATTTATGGGGCTTGGTCCCAGCCTTGACGCTTGGGGT
GGTAGGACGGGTGGGGGTGATTAGTGTGTTGTGTGCGATGGTGGAGCTGG
TGCCCTGGGGGGATGATAATGTGAGTGTCCCCGTGGTCGCGTCGGTGTTG
GCGACGGCTCTGTTGATGTAG
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Synonyms
Publications