NO04G04040.1, NO04G04040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04040.1
Unique NameNO04G04040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1114
Alignment locationchr4:1082079..1083491 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1082079..1083491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04040.1 vs.
Match: EWM28670.1 (hypothetical protein Naga_100002g134 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 5.600e-20
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 0 
Query:    4 VARRKMPQSGAITSQQQATLDASTKKQQQQQQPSDDLGAMAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGL 101
            ++RR +P+  + T+Q++A L ++           DDL A  +F+KALIF+G WNKETFP+FLDVIYW RQ+LAL+IG+VWGRA S GG AIMSF  L
Sbjct:    1 MSRRNVPERASATAQEKAALTSTNTAAVDV----DDLDAWGVFKKALIFQGQWNKETFPQFLDVIYWFRQVLALVIGVVWGRAASRGGTAIMSFAAL 93
The following BLAST results are available for this feature:
BLAST of NO04G04040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28670.15.600e-2054.64hypothetical protein Naga_100002g134 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04040NO04G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04040.1NO04G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04040.1.cds1NO04G04040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04040.1.cds2NO04G04040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04040.1.cds3NO04G04040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04040.1 ID=NO04G04040.1|Name=NO04G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
AGGGAAAACACTATGTCAGGAGTTGCCAGAAGAAAGATGCCGCAAAGCGG
CGCCATCACTTCGCAGCAGCAAGCCACTCTCGACGCCTCCACCAAGAAGC
AGCAGCAGCAGCAGCAACCTTCAGACGACTTGGGAGCGATGGCAATATTC
CAAAAGGCCCTAATTTTTCGAGGCAATTGGAATAAGGAGACCTTTCCCGA
GTTCTTGGACGTCATCTACTGGCTCCGACAGATGCTGGCGTTAATCATTG
GACTCGTATGGGGTCGAGCTCCGTCACTGGGAGGGCCTGCGATCATGTCA
TTTGTTGGTTTGGAACTTATGCTTCCTCGAATGTACTACCAAAAATGGGC
GAGTGTGGATGAGGATGATTTTGATGCCGTGGCGCTCCTGAAGGAAGGTT
TACAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGGTGCTGACCTACACA
ATCTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGCAAATGC
AGCAGCTGCAGGTGGCGCAGGGCCTTGAGGAGTGAGAGGGACGAGGATTA
GATGATAATGCTTTCTTAGGGGGAAGTAGATGGACGGTGGATTTGGGAGA
AAAGAGGAGGAGAGGGAACAAGAGGCTGAGGAAAAGAAGGAAGGGGAAGG
ATGAGGAGGAGGAGGAGGAGGAGGAGGGGGCAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGAACAAGAGATATGCTGGTGCCCCGCCCCGCTCACACAA
GACAAAGCAACAGGGTAAGGGTTAGGATTATATAAAAAAAGAAAGCAGGA
GAAATGCAGACGCAAAACACGCGTCCAAAGTGGGAGGAAATTTGATCGTA
ATGTTTTGATCCCTCTTGCCCTCCCTTCCACCCTCCCTTTCTTCTGTCTC
TTAATTTGTGTCCTTACTTTTGTTTTCCCATCTAATCCTCACGGCGTTAC
ACGAGAAAGTGTGAGTTGGGCCCACTTACGTAAATTCACCCACCCCTCCT
CCCTCTCTCTCATTTCGCAGTACATGCTGCTTGTCACTGTCTTTCCTCAG
TCATCAACGGGCACAAAACAAAAGGAAAAGGCGCGCGAACGGACGGGAGT
GGTTTGTTCAAATT
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protein sequence of NO04G04040.1

>NO04G04040.1-protein ID=NO04G04040.1-protein|Name=NO04G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSGVARRKMPQSGAITSQQQATLDASTKKQQQQQQPSDDLGAMAIFQKAL
IFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGL
ELMLPRMYYQKWASVDEDDFDAVALLKEGLQSAAGVFFATWVLTYTICHN
ASFEKAAAAAANAAAAGGAGP*
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mRNA from alignment at chr4:1082079..1083491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04040.1 ID=NO04G04040.1|Name=NO04G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr4:1082079..1083491+ (Nannochloropsis oceanica)
AGGGAAAACACTATGTCAGGAGTTGCCAGAAGAAAGATGCCGCAAAGCGG
CGCCATCACTTCGCAGCAGCAAGCCACTCTCGACGCCTCCACCAAGAAGC
AGCAGCAGCAGCAGCAACCTTCAGACGACTTGGGAGCGATGGCAATATTC
CAAAAGGCCCTAATTTTTCGAGGCAATTGGAATAAGGTATGTCTGGGTGT
GTGCACCGTAGAAATGAGTCAATGGTGGCGTGCCCTCAGTCACTCAGGAT
TCACATATCCCTACTTATTCCTGGGCACACAGGAGACCTTTCCCGAGTTC
TTGGACGTCATCTACTGGCTCCGACAGATGCTGGCGTTAATCATTGGACT
CGTATGGGGTCGAGCTCCGTCACTGGGAGGGCCTGCGATCATGTCATTTG
TTGGTTTGGTAAAAGTTGAAGAAATGAGGGGAGGGAGGGATGAAGGGAGG
GAAGGTTGAGGGCATGTCAGCCCGTTTCTCGCTTGCGCATTATCTTGTGC
TTCCTCGGATTGACCGAATGAGGCTAATTCTGACGCCGTAACTCTACCAA
AGGGAGTGTCGCACTTACTTTATTCCTCCTTCTCTTTCTCCTTCCCTCCG
TTCCCCCTCAGGAACTTATGCTTCCTCGAATGTACTACCAAAAATGGGCG
AGTGTGGATGAGGATGATTTTGATGCCGTGGCGCTCCTGAAGGAAGGTTT
ACAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGGTGCTGACCTACACAA
TCTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGCAAATGCA
GCAGCTGCAGGTGGCGCAGGGCCTTGAGGAGTGAGAGGGACGAGGATTAG
ATGATAATGCTTTCTTAGGGGGAAGTAGATGGACGGTGGATTTGGGAGAA
AAGAGGAGGAGAGGGAACAAGAGGCTGAGGAAAAGAAGGAAGGGGAAGGA
TGAGGAGGAGGAGGAGGAGGAGGAGGGGGCAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAACAAGAGATATGCTGGTGCCCCGCCCCGCTCACACAAG
ACAAAGCAACAGGGTAAGGGTTAGGATTATATAAAAAAAGAAAGCAGGAG
AAATGCAGACGCAAAACACGCGTCCAAAGTGGGAGGAAATTTGATCGTAA
TGTTTTGATCCCTCTTGCCCTCCCTTCCACCCTCCCTTTCTTCTGTCTCT
TAATTTGTGTCCTTACTTTTGTTTTCCCATCTAATCCTCACGGCGTTACA
CGAGAAAGTGTGAGTTGGGCCCACTTACGTAAATTCACCCACCCCTCCTC
CCTCTCTCTCATTTCGCAGTACATGCTGCTTGTCACTGTCTTTCCTCAGT
CATCAACGGGCACAAAACAAAAGGAAAAGGCGCGCGAACGGACGGGAGTG
GTTTGTTCAAATT
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Coding sequence (CDS) from alignment at chr4:1082079..1083491+

>NO04G04040.1 ID=NO04G04040.1|Name=NO04G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr4:1082079..1083491+ (Nannochloropsis oceanica)
ATGTCAGGAGTTGCCAGAAGAAAGATGCCGCAAAGCGGCGCCATCACTTC
GCAGCAGCAAGCCACTCTCGACGCCTCCACCAAGAAGCAGCAGCAGCAGC
AGCAACCTTCAGACGACTTGGGAGCGATGGCAATATTCCAAAAGGCCCTA
ATTTTTCGAGGCAATTGGAATAAGGAGACCTTTCCCGAGTTCTTGGACGT
CATCTACTGGCTCCGACAGATGCTGGCGTTAATCATTGGACTCGTATGGG
GTCGAGCTCCGTCACTGGGAGGGCCTGCGATCATGTCATTTGTTGGTTTG
GAACTTATGCTTCCTCGAATGTACTACCAAAAATGGGCGAGTGTGGATGA
GGATGATTTTGATGCCGTGGCGCTCCTGAAGGAAGGTTTACAATCAGCAG
CCGGTGTGTTTTTTGCAACGTGGGTGCTGACCTACACAATCTGTCATAAT
GCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGCAAATGCAGCAGCTGCAGG
TGGCGCAGGGCCTTGA
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Synonyms
Publications