NO04G04030.1, NO04G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04030.1
Unique NameNO04G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2310
Alignment locationchr4:1079132..1081739 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1079132..1081739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04030.1 vs.
Match: EWM28754.1 (g-protein beta subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 458.8 bits (1179), Expect = 3.100e-125
Identity = 247/402 (61.44%), Postives = 296/402 (73.63%), Query Frame = 0 
Query:   14 LPPGVHRNRLKWLKGGDSHALI------VPPNRAALSSAP-SPSSYS-------PSAAPQCVVYWMQRSVRSTLNHALEMSIHHANNLGLPLIVVFAIVTSYPGANERGFAFLFEGLSEVQSLLAKRGIRMVVREAKPKGSGDGAGAAADSAAAAASTAVPDVVLDTCRRLNAPLLIMDRAYERLLRTWRDIVCTCINCPVLLVESDVVVPVEAASPRPLASAAALRRAHAPLLAQYLQPLPD-----------------TTTFAFDELDLSDPHALLSSLSGIDRSVPRITFKRGGPTQAKLHLARFLRDRLEGYQNKRKEAGERHQSFLSPYLHFGHISPLYVVEKVKKHTRSSAEDRRRFVDELVTWREMACHFVWWNREGYDRWEGAVPRWARETLLE 385
            LP GVH  RLKWL G ++           PP   + SS P +P+S +        S+ P+CVVYWMQRSVRS+ NHALE++IH+AN L +PL+VV+AIVTSYPGANERGFAFLFEGL E Q+ LA RGIR+VVREAK  G     GAAA        TAVP  ++DTC+R+ APLL+MDRAYERLLRTWR+ VC  + CPVL+VESDVVVPV+  SP+PL+SAAALRRAHAPLL+QYL PLP+                  +    DEL++ DP ALLSSL+ +DRSVPR++FKRGG TQAKL LARFLRDRL GYQ +RKEA  RHQSFLSPYLHFGHISP+YV  KV++H  S+ +DRRRF DEL+TWREMA HFV+ +RE YDR+EG +PRWARE+L E
Sbjct:   15 LPSGVHHTRLKWLNGCEARLYCHTSSSSFPPRSPSSSSPPFAPASTNITTPVAKDSSVPRCVVYWMQRSVRSSFNHALEVAIHYANQLDVPLLVVYAIVTSYPGANERGFAFLFEGLHEAQTSLANRGIRLVVREAKVVGENSTRGAAA--------TAVPLTIVDTCKRVKAPLLVMDRAYERLLRTWREDVCARVACPVLMVESDVVVPVDVVSPQPLSSAAALRRAHAPLLSQYLLPLPEGSLRHPSHALPACSPSAPSPLFPDELEMHDPLALLSSLADLDRSVPRVSFKRGGSTQAKLLLARFLRDRLRGYQARRKEAVARHQSFLSPYLHFGHISPIYVALKVRQHASSTPQDRRRFCDELLTWREMAVHFVYHHRESYDRYEG-IPRWARESLEE 407
The following BLAST results are available for this feature:
BLAST of NO04G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28754.13.100e-12561.44g-protein beta subunit 1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04030NO04G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04030.1NO04G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04030.1.cds1NO04G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04030.1.cds2NO04G04030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04030.1.cds3NO04G04030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04030.1 ID=NO04G04030.1|Name=NO04G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp
ATGTCTGTCACAACTGCTACCAGCACCAGCACGCTGCCCTTACCGCCAGG
CGTGCATCGAAATCGTCTGAAGTGGCTCAAGGGAGGTGACTCACACGCAT
TAATTGTACCTCCCAACCGGGCCGCTTTGTCATCAGCGCCCTCCCCGTCT
TCCTACTCTCCCTCCGCCGCACCGCAATGCGTTGTCTACTGGATGCAACG
CAGCGTCCGTTCCACCCTTAATCATGCATTGGAAATGTCAATTCATCACG
CTAACAACCTAGGCCTCCCCCTTATTGTCGTTTTTGCAATCGTCACCTCC
TACCCAGGGGCAAACGAGCGAGGCTTTGCCTTCCTTTTTGAAGGGCTAAG
TGAAGTGCAGTCCCTGTTGGCCAAACGTGGAATTCGGATGGTGGTTCGTG
AAGCTAAACCTAAGGGTAGTGGTGATGGCGCAGGAGCAGCAGCAGATTCA
GCAGCGGCAGCAGCTTCAACAGCTGTACCAGACGTCGTCCTTGACACGTG
CCGTCGCCTCAATGCCCCCCTCCTAATAATGGATCGGGCGTATGAACGCC
TTTTAAGGACATGGCGTGATATCGTATGTACTTGCATCAATTGTCCTGTG
TTATTGGTCGAAAGCGACGTAGTCGTCCCTGTCGAAGCCGCCTCCCCTCG
TCCCCTGGCATCAGCAGCAGCTTTGCGACGTGCCCACGCCCCCTTGCTCG
CGCAATATTTGCAGCCATTGCCGGACACCACCACCTTCGCTTTCGACGAG
CTTGATCTTTCAGACCCTCACGCTCTCCTTTCTTCCCTCTCCGGGATCGA
TCGCTCTGTCCCCCGTATCACCTTCAAACGTGGTGGCCCTACTCAAGCCA
AGCTTCACCTCGCTCGTTTTCTTCGTGACCGTCTTGAGGGATACCAGAAC
AAGAGGAAAGAGGCGGGAGAACGACACCAGAGTTTCCTAAGTCCCTATCT
ACATTTCGGGCATATCTCCCCTCTGTATGTGGTGGAAAAGGTGAAGAAAC
ATACGCGGAGTAGTGCGGAGGATAGAAGGCGGTTTGTCGATGAATTGGTT
ACATGGAGAGAGATGGCTTGTCACTTCGTGTGGTGGAACAGGGAGGGTTA
TGATAGGTGGGAGGGGGCCGTGCCGAGGTGGGCAAGGGAGACCTTGCTAG
AGGGATGGAGGCAAGCAGGGGGAGGAAGAGAGGAGGAGGGAGAAGGAGCT
GGAGGGGCGTCTGGTGGGAGTGGGGCGAGCGTTCTGGCGAGGGATGGAGG
TGGAGGAGGTGGGGGAGGAGGAAGAGGAGCTGGAGGAGGAGGAGGCCGCA
CTCATGCATATAGCTTGGAGGAGTTGGAGGAGGGACGGACGCATGACGTG
CTTTGGAATGCGGCACAGATGGAGATGAGGGTGACGGGCTATATGCATAA
TTATCTGAGAATGTTCTGGTGTAAAAGCATAATTCTTTGGACTGCCGAGG
GGCCGGAGGAGGCGTACCGGCGTTCTCTCTACCTCAACGATCGGTATTTT
CTCGATGGACGTGACTGCAATGGCTACATGGGCGTGGGATGGTGCTTTGG
CTTATACGATAGACCCATGCCGGGTCGGAGCCCCGTCTTCGGAAAGGTAA
GGCGAATGACGACGAGTGGTGTGCGGTCAAAAATGGATGTGGGAAAATAT
GTAGAGCAAGTGAGGCATCTGGCAAGGAAGGTGAGAGAGGAAGGGAGGGA
GGGTAGTGAGGGACTGAAGGTGGAAGACGCTATCTATGCGACCCCAATGA
AGAGGAGCATAGAGACCTTTATTTCGTGGGATAGTGGTGAAGAAAGAGGA
AGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGCGGAGGCGGGGCAACACCGGCACCAGGGACGGAATATAGCGTA
AGTGGTGGTCGCCTGCCGCTGCTGCCGCCGAAAGGAGCAACAGATACCAA
AAAGCAGAAAATTACCGACTTTTTCTTTGGTGGAAGCGGCGGACGCGGAG
GGAAGAAGGAAGGAAAATAATGAGGAGCAGGTAGAATGTGAAGGCTTACA
CAGATGCGTGTTCATAAACACCGACAGCGTTAGAGACAAAGCACCGGGTC
AAAAAAGCACAGACATCCCCACTAAAAACGAAGAATGCGCAAGGGGGAAT
AAGAAGAATACAACATACAAAAAGCCGGAATTAGCAATTAGGCAGGTGAG
GCAGGAGGTTGGTCGAAAAATGGGCCCAGTGTAACTAAAACGCCGCGTCG
TCCCCTTTTT
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protein sequence of NO04G04030.1

>NO04G04030.1-protein ID=NO04G04030.1-protein|Name=NO04G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MSVTTATSTSTLPLPPGVHRNRLKWLKGGDSHALIVPPNRAALSSAPSPS
SYSPSAAPQCVVYWMQRSVRSTLNHALEMSIHHANNLGLPLIVVFAIVTS
YPGANERGFAFLFEGLSEVQSLLAKRGIRMVVREAKPKGSGDGAGAAADS
AAAAASTAVPDVVLDTCRRLNAPLLIMDRAYERLLRTWRDIVCTCINCPV
LLVESDVVVPVEAASPRPLASAAALRRAHAPLLAQYLQPLPDTTTFAFDE
LDLSDPHALLSSLSGIDRSVPRITFKRGGPTQAKLHLARFLRDRLEGYQN
KRKEAGERHQSFLSPYLHFGHISPLYVVEKVKKHTRSSAEDRRRFVDELV
TWREMACHFVWWNREGYDRWEGAVPRWARETLLEGWRQAGGGREEEGEGA
GGASGGSGASVLARDGGGGGGGGGRGAGGGGGRTHAYSLEELEEGRTHDV
LWNAAQMEMRVTGYMHNYLRMFWCKSIILWTAEGPEEAYRRSLYLNDRYF
LDGRDCNGYMGVGWCFGLYDRPMPGRSPVFGKVRRMTTSGVRSKMDVGKY
VEQVRHLARKVREEGREGSEGLKVEDAIYATPMKRSIETFISWDSGEERG
RGGGGRGRGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGATPAPGTEYSV
SGGRLPLLPPKGATDTKKQKITDFFFGGSGGRGGKKEGK*
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mRNA from alignment at chr4:1079132..1081739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04030.1 ID=NO04G04030.1|Name=NO04G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr4:1079132..1081739- (Nannochloropsis oceanica)
ATGTCTGTCACAACTGCTACCAGCACCAGCACGCTGCCCTTACCGCCAGG
CGTGCATCGAAATCGTCTGAAGTGGCTCAAGGGAGGTGACTCACACGCAT
TAATTGTACCTCCCAACCGGGCCGCTTTGTCATCAGCGCCCTCCCCGTCT
TCCTACTCTCCCTCCGCCGCACCGCAATGCGTTGTCTACTGGATGCAACG
CAGCGTCCGTTCCACCCTTAATCATGCATTGGAAATGTCAATTCATCACG
CTAACAACCTAGGCCTCCCCCTTATTGTCGTTTTTGCAATCGTCACCTCC
TACCCAGGGGCAAACGAGCGAGGCTTTGCCTTCCTTTTTGAAGGGCTAAG
TGAAGTGCAGTCCCTGTTGGCCAAACGTGGAATTCGGATGGTGGTTCGTG
AAGCTAAACCTAAGGGTAGTGGTGATGGCGCAGGAGCAGCAGCAGATTCA
GCAGCGGCAGCAGCTTCAACAGCTGTACCAGACGTCGTCCTTGACACGTG
CCGTCGCCTCAATGCCCCCCTCCTAATAATGGATCGGGCGTATGAACGCC
TTTTAAGGACATGGCGTGATATCGTATGTACTTGCATCAATTGTCCTGTG
TTATTGGTCGAAAGCGACGTAGTCGTCCCTGTCGAAGCCGCCTCCCCTCG
TCCCCTGGCATCAGCAGCAGCTTTGCGACGTGCCCACGCCCCCTTGCTCG
CGCAATATTTGCAGCCATTGCCGGAGTTAGTCCTGACGCACCCTTCAGTG
GATTTACCCTGCTTCGCTCCTTCTATTCACCCTAATTCTTCCGCCTCCTT
GAGCATGAAAGCCACTCCTAACCCTTCCTCCCTCCCCCCCCCGACCTCTC
TTCCCCCCCATCCCCAAGCACCACCACCTTCGCTTTCGACGAGCTTGATC
TTTCAGACCCTCACGCTCTCCTTTCTTCCCTCTCCGGGATCGATCGCTCT
GTCCCCCGTATCACCTTCAAACGTGGTGGCCCTACTCAAGCCAAGCTTCA
CCTCGCTCGTTTTCTTCGTGACCGTCTTGAGGGATACCAGAACAAGAGGA
AAGAGGCGGGAGAACGACACCAGAGTTTCCTAAGTCCCTATCTACATTTC
GGGCATATCTCCCCTCTGTATGTGGTGGAAAAGGTGAAGAAACATACGCG
GAGTAGTGCGGAGGATAGAAGGCGGTTTGTCGATGAATTGGTTACATGGA
GAGAGATGGCTTGTCACTTCGTGTGGTGGAACAGGGAGGGTTATGATAGG
TGGGAGGGGGCCGTGCCGAGGTGGGCAAGGGAGACCTTGCTAGAGGGATG
GAGGCAAGCAGGGGGAGGAAGAGAGGAGGAGGGAGAAGGAGCTGGAGGGG
CGTCTGGTGGGAGTGGGGCGAGCGTTCTGGCGAGGGATGGAGGTGGAGGA
GGTGGGGGAGGAGGAAGAGGAGCTGGAGGAGGAGGAGGCCGCACTCATGC
ATATAGCTTGGAGGAGTTGGAGGAGGGACGGACGCATGACGTGCTTTGGA
ATGCGGCACAGATGGAGATGAGGGTGACGGGCTATATGCATAATTATCTG
AGAATGTTCTGGTGAGTGTTTGTGCTTCCTCCTTCCTTCCATCCTTCCCT
CCATCCTTCCCTCACTTCTTCCGATGGATAAAGTTCCTTTTGGCTGTTTT
GTTGTTTGTACGACGTGCATTAATCCGAGCATCCTTCGCTTCACATCTCT
CTCTACCCCTTCCTAGGTGTAAAAGCATAATTCTTTGGACTGCCGAGGGG
CCGGAGGAGGCGTACCGGCGTTCTCTCTACCTCAACGATCGGTATTTTCT
CGATGGACGTGACTGCAATGGCTACATGGGCGTGGGATGGTGCTTTGGCT
TATACGATAGACCCATGCCGGGTCGGAGCCCCGTCTTCGGAAAGGTAAGG
CGAATGACGACGAGTGGTGTGCGGTCAAAAATGGATGTGGGAAAATATGT
AGAGCAAGTGAGGCATCTGGCAAGGAAGGTGAGAGAGGAAGGGAGGGAGG
GTAGTGAGGGACTGAAGGTGGAAGACGCTATCTATGCGACCCCAATGAAG
AGGAGCATAGAGACCTTTATTTCGTGGGATAGTGGTGAAGAAAGAGGAAG
AGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGCGGAGGCGGGGCAACACCGGCACCAGGGACGGAATATAGCGTAAG
TGGTGGTCGCCTGCCGCTGCTGCCGCCGAAAGGAGCAACAGATACCAAAA
AGCAGAAAATTACCGACTTTTTCTTTGGTGGAAGCGGCGGACGCGGAGGG
AAGAAGGAAGGAAAATAATGAGGAGCAGGTAGAATGTGAAGGCTTACACA
GATGCGTGTTCATAAACACCGACAGCGTTAGAGACAAAGCACCGGGTCAA
AAAAGCACAGACATCCCCACTAAAAACGAAGAATGCGCAAGGGGGAATAA
GAAGAATACAACATACAAAAAGCCGGAATTAGCAATTAGGCAGGTGAGGC
AGGAGGTTGGTCGAAAAATGGGCCCAGTGTAACTAAAACGCCGCGTCGTC
CCCTTTTT
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Coding sequence (CDS) from alignment at chr4:1079132..1081739-

>NO04G04030.1 ID=NO04G04030.1|Name=NO04G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at chr4:1079132..1081739- (Nannochloropsis oceanica)
ATGTCTGTCACAACTGCTACCAGCACCAGCACGCTGCCCTTACCGCCAGG
CGTGCATCGAAATCGTCTGAAGTGGCTCAAGGGAGGTGACTCACACGCAT
TAATTGTACCTCCCAACCGGGCCGCTTTGTCATCAGCGCCCTCCCCGTCT
TCCTACTCTCCCTCCGCCGCACCGCAATGCGTTGTCTACTGGATGCAACG
CAGCGTCCGTTCCACCCTTAATCATGCATTGGAAATGTCAATTCATCACG
CTAACAACCTAGGCCTCCCCCTTATTGTCGTTTTTGCAATCGTCACCTCC
TACCCAGGGGCAAACGAGCGAGGCTTTGCCTTCCTTTTTGAAGGGCTAAG
TGAAGTGCAGTCCCTGTTGGCCAAACGTGGAATTCGGATGGTGGTTCGTG
AAGCTAAACCTAAGGGTAGTGGTGATGGCGCAGGAGCAGCAGCAGATTCA
GCAGCGGCAGCAGCTTCAACAGCTGTACCAGACGTCGTCCTTGACACGTG
CCGTCGCCTCAATGCCCCCCTCCTAATAATGGATCGGGCGTATGAACGCC
TTTTAAGGACATGGCGTGATATCGTATGTACTTGCATCAATTGTCCTGTG
TTATTGGTCGAAAGCGACGTAGTCGTCCCTGTCGAAGCCGCCTCCCCTCG
TCCCCTGGCATCAGCAGCAGCTTTGCGACGTGCCCACGCCCCCTTGCTCG
CGCAATATTTGCAGCCATTGCCGGACACCACCACCTTCGCTTTCGACGAG
CTTGATCTTTCAGACCCTCACGCTCTCCTTTCTTCCCTCTCCGGGATCGA
TCGCTCTGTCCCCCGTATCACCTTCAAACGTGGTGGCCCTACTCAAGCCA
AGCTTCACCTCGCTCGTTTTCTTCGTGACCGTCTTGAGGGATACCAGAAC
AAGAGGAAAGAGGCGGGAGAACGACACCAGAGTTTCCTAAGTCCCTATCT
ACATTTCGGGCATATCTCCCCTCTGTATGTGGTGGAAAAGGTGAAGAAAC
ATACGCGGAGTAGTGCGGAGGATAGAAGGCGGTTTGTCGATGAATTGGTT
ACATGGAGAGAGATGGCTTGTCACTTCGTGTGGTGGAACAGGGAGGGTTA
TGATAGGTGGGAGGGGGCCGTGCCGAGGTGGGCAAGGGAGACCTTGCTAG
AGGGATGGAGGCAAGCAGGGGGAGGAAGAGAGGAGGAGGGAGAAGGAGCT
GGAGGGGCGTCTGGTGGGAGTGGGGCGAGCGTTCTGGCGAGGGATGGAGG
TGGAGGAGGTGGGGGAGGAGGAAGAGGAGCTGGAGGAGGAGGAGGCCGCA
CTCATGCATATAGCTTGGAGGAGTTGGAGGAGGGACGGACGCATGACGTG
CTTTGGAATGCGGCACAGATGGAGATGAGGGTGACGGGCTATATGCATAA
TTATCTGAGAATGTTCTGGTGTAAAAGCATAATTCTTTGGACTGCCGAGG
GGCCGGAGGAGGCGTACCGGCGTTCTCTCTACCTCAACGATCGGTATTTT
CTCGATGGACGTGACTGCAATGGCTACATGGGCGTGGGATGGTGCTTTGG
CTTATACGATAGACCCATGCCGGGTCGGAGCCCCGTCTTCGGAAAGGTAA
GGCGAATGACGACGAGTGGTGTGCGGTCAAAAATGGATGTGGGAAAATAT
GTAGAGCAAGTGAGGCATCTGGCAAGGAAGGTGAGAGAGGAAGGGAGGGA
GGGTAGTGAGGGACTGAAGGTGGAAGACGCTATCTATGCGACCCCAATGA
AGAGGAGCATAGAGACCTTTATTTCGTGGGATAGTGGTGAAGAAAGAGGA
AGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGCGGAGGCGGGGCAACACCGGCACCAGGGACGGAATATAGCGTA
AGTGGTGGTCGCCTGCCGCTGCTGCCGCCGAAAGGAGCAACAGATACCAA
AAAGCAGAAAATTACCGACTTTTTCTTTGGTGGAAGCGGCGGACGCGGAG
GGAAGAAGGAAGGAAAATAA
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Synonyms
Publications