NO04G04020.1, NO04G04020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04020.1
Unique NameNO04G04020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr4:1077610..1078819 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1077610..1078819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04020.1 vs.
Match: EWM28754.1 (g-protein beta subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 624.0 bits (1608), Expect = 2.900e-175
Identity = 298/359 (83.01%), Postives = 324/359 (90.25%), Query Frame = 0 
Query:    7 SLAERIEQAKTKAQTLKTEIEEIRKQKDNATLPGAARSQSLPKFEDKMPRVRRVLKGHFGKVYSMHWAHDGTQLISASQDGKLIIWNAHTTNKNQSISLRSSWVMTCCFEQTTGSLVACGGLDNVCSVYRVGGPGSSASSSAAAQSAVRPAHELMAHDGYLSCCRFLDEGSLLTSSGDSTCIFWDVEKNEAITSFADHGGDVMSLSVLPSVSRQVFVSGSCDATAKVWDIRSGKCVQTFIGHESDVNSVQFFPDGNAVGTGSDDSTCRLFDLRSYGEVNVFGNDKIVSGVTSVAFSASGRVLFAGHDDSSCVGWDTIGEGKNVAFQLAGHDSRVSCLGMNSKGEALCTGSWDSLLKVWA 366
            SL +RIEQAK KAQTLK EIEE+RKQKDNA LPGAA +Q LP F++K+ R+RR+LKGHFGKVYSMHWA   TQL+SASQDGKLIIWNAHTTNK QSI LRSSWVMTCCFEQT G+LVACGGLDNVCSVYRV GPG  A SS   QSA+RPAHEL+AHDGYLSCCRF+DE SLLTSSGDSTCIFWDVEKNEAITSFADHGGDVMSLSVLPS++R +FVSGSCDATAKVWD R GKCVQT  GHESDVN+VQFFPDGNA  TGSDDSTCRLFD+RSYG VNVFGNDKIVSGVTSV+FSASGR+LFAGHDDSSC+ WD + +GK +AFQLAGH+SRVSCLG+NS GEALCTGSWDSLLKVWA
Sbjct:  728 SLGDRIEQAKCKAQTLKKEIEEVRKQKDNAMLPGAANNQQLPDFKNKIIRIRRILKGHFGKVYSMHWAQKSTQLVSASQDGKLIIWNAHTTNKVQSIPLRSSWVMTCCFEQTNGALVACGGLDNVCSVYRVSGPGMPAPSSPTGQSAIRPAHELIAHDGYLSCCRFIDEQSLLTSSGDSTCIFWDVEKNEAITSFADHGGDVMSLSVLPSINRHIFVSGSCDATAKVWDTRLGKCVQTHAGHESDVNAVQFFPDGNAFSTGSDDSTCRLFDIRSYGAVNVFGNDKIVSGVTSVSFSASGRLLFAGHDDSSCLAWDVLADGKGLAFQLAGHESRVSCLGVNSTGEALCTGSWDSLLKVWA 1086
The following BLAST results are available for this feature:
BLAST of NO04G04020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28754.12.900e-17583.01g-protein beta subunit 1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04020NO04G04020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04020.1NO04G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04020.1.cds1NO04G04020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04020.1 ID=NO04G04020.1|Name=NO04G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
ATGGGGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAAC
GAAGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAG
ACAATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTT
GAGGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAA
GGTCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCT
CGCAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAAT
CAATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTCGAACA
AACGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTG
TCTACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCA
CAATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCT
GTCTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGG
ACTCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCT
TTCGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGT
GAGTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGT
GGGACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGT
GACGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGG
ATCGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGG
TGAATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCG
TTCTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTG
TGTGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGG
CAGGGCATGACAGCCGCGTATCGTGCCTTGGAATGAATAGCAAGGGGGAG
GCTTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAGTA
GGAGGCAGGAAGGGAAGGGAGGGGCATGACCATATGGTGTGAGTGAATGT
GTGCGTGCTCGGAAAAAATGGAAAAGGAAAAGGAAAAGAGAAGAAAGCGT
GGGTATAGGG
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protein sequence of NO04G04020.1

>NO04G04020.1-protein ID=NO04G04020.1-protein|Name=NO04G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MGEVGSSLAERIEQAKTKAQTLKTEIEEIRKQKDNATLPGAARSQSLPKF
EDKMPRVRRVLKGHFGKVYSMHWAHDGTQLISASQDGKLIIWNAHTTNKN
QSISLRSSWVMTCCFEQTTGSLVACGGLDNVCSVYRVGGPGSSASSSAAA
QSAVRPAHELMAHDGYLSCCRFLDEGSLLTSSGDSTCIFWDVEKNEAITS
FADHGGDVMSLSVLPSVSRQVFVSGSCDATAKVWDIRSGKCVQTFIGHES
DVNSVQFFPDGNAVGTGSDDSTCRLFDLRSYGEVNVFGNDKIVSGVTSVA
FSASGRVLFAGHDDSSCVGWDTIGEGKNVAFQLAGHDSRVSCLGMNSKGE
ALCTGSWDSLLKVWA*
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mRNA from alignment at chr4:1077610..1078819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04020.1 ID=NO04G04020.1|Name=NO04G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp|location=Sequence derived from alignment at chr4:1077610..1078819- (Nannochloropsis oceanica)
ATGGGGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAAC
GAAGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAG
ACAATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTT
GAGGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAA
GGTCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCT
CGCAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAAT
CAATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTCGAACA
AACGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTG
TCTACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCA
CAATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCT
GTCTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGG
ACTCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCT
TTCGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGT
GAGTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGT
GGGACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGT
GACGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGG
ATCGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGG
TGAATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCG
TTCTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTG
TGTGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGG
CAGGGCATGACAGCCGCGTATCGTGCCTTGGAATGAATAGCAAGGGGGAG
GCTTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAGTA
GGAGGCAGGAAGGGAAGGGAGGGGCATGACCATATGGTGTGAGTGAATGT
GTGCGTGCTCGGAAAAAATGGAAAAGGAAAAGGAAAAGAGAAGAAAGCGT
GGGTATAGGG
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Coding sequence (CDS) from alignment at chr4:1077610..1078819-

>NO04G04020.1 ID=NO04G04020.1|Name=NO04G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr4:1077610..1078819- (Nannochloropsis oceanica)
ATGGGGGAAGTGGGCAGCAGTTTGGCCGAACGCATAGAACAAGCCAAAAC
GAAGGCACAGACGCTAAAAACGGAGATTGAGGAAATAAGAAAACAAAAAG
ACAATGCTACCCTGCCAGGTGCTGCTAGGAGCCAGTCTTTGCCCAAATTT
GAGGACAAAATGCCCAGGGTACGAAGGGTGCTCAAAGGCCATTTTGGCAA
GGTCTACTCCATGCATTGGGCGCACGACGGCACACAGCTCATCTCGGCCT
CGCAAGACGGCAAGCTCATCATTTGGAACGCTCACACCACAAACAAGAAT
CAATCCATCTCCCTTCGCTCCTCTTGGGTCATGACCTGCTGCTTCGAACA
AACGACGGGCTCTTTGGTGGCGTGCGGCGGGTTGGACAATGTTTGCTCTG
TCTACCGCGTTGGCGGGCCCGGGAGCTCCGCTTCCTCCTCTGCCGCAGCA
CAATCGGCGGTGAGACCTGCCCATGAGCTCATGGCTCACGACGGATATCT
GTCTTGCTGCCGCTTTTTGGACGAGGGAAGCTTGTTGACCTCCTCGGGGG
ACTCAACGTGCATTTTTTGGGATGTGGAGAAGAATGAGGCGATTACTTCT
TTCGCGGACCATGGAGGGGATGTGATGAGCCTTTCGGTTTTACCCAGCGT
GAGTCGACAGGTGTTCGTCTCGGGATCGTGCGATGCGACGGCTAAGGTGT
GGGACATCCGGTCGGGGAAGTGTGTACAGACATTCATAGGGCATGAAAGT
GACGTGAACTCGGTGCAGTTTTTCCCAGACGGGAATGCTGTCGGCACTGG
ATCGGACGATTCGACATGCCGTCTGTTTGATTTGCGGTCATACGGCGAGG
TGAATGTGTTTGGGAACGATAAAATTGTTTCAGGGGTCACGAGTGTGGCG
TTCTCAGCCTCGGGCCGGGTGCTATTCGCCGGCCACGATGATTCGAGTTG
TGTGGGTTGGGATACGATTGGGGAGGGAAAGAACGTCGCTTTTCAATTGG
CAGGGCATGACAGCCGCGTATCGTGCCTTGGAATGAATAGCAAGGGGGAG
GCTTTGTGCACGGGCTCGTGGGATTCGTTGTTAAAGGTGTGGGCGTAG
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Synonyms
Publications