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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1061262..1063807 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03950.2 vs.
Match: XP_005855772.1 (hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526]; EKU20592.1 hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 314.7 bits (805), Expect = 4.700e-82 Identity = 199/388 (51.29%), Postives = 246/388 (63.40%), Query Frame = 0
Query: 22 TLKQQ----EEASAADPTTIPAAVGPISHEKKQWLEQVMEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAAVEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIK--GADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEALREAMLKRRDVIEKLEGVEREEA-EDELRFWEVLAGGGEGRVFSRDGE 403
TLKQQ E A A P GPISH+KK+WLE+VMEGTF+DM+ RL+ L L++L G+ S+ + AA +QE ++ ER +ALWEE++E VENLDYALMFCQ GGL LF++LL+AAA +D EA AV L VLATLTQNN PVQ VL F + R V+ LL+ ++ G +++SS SE + R R QAK L A+SC +RGH AEA FVQ +A VF A LQPS+ RV KALFFLQALLGADDAT RGE L LLPLVVPCL E+ LRHTAACVV+ + NL GGP V+FG++GGEALR AM +R+ ++ G +EA +EL FW LA GG GR+ RDGE
Sbjct: 1 TLKQQGPTAESAGGAAP-------GPISHDKKEWLERVMEGTFVDMSKRLRERLGLLEELLQ----GERSEPRPRPEANVQAASDQEP-SAVERGQALWEEMEEDVENLDYALMFCQVGGLQVLFQYLLRAAAGEQDAEARTWAVRVLTVLATLTQNNPPVQAEVLAFAMQDAR-------------GGGRDVLALLSRLFLREVGLEEASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLL----GSGSDEAMGEELLFWSALARGGTGRMSWRDGE 359
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03950.2 ID=NO04G03950.2|Name=NO04G03950.2|organism=Nannochloropsis oceanica|type=mRNA|length=2435bp
TCCCCTCCCGCACCACCAACATCATCCCCAACCCCCTTTCTCCACCCCTC
CTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATCGCCTT
GCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGTGACACTGTTTTCA
TCAAGGTTGTCGGGAGCGGGATCGCATCCCTCCTGCTCGCCGTGGGGTTC
CGACGTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAAGGACTCTC
CCTCGGTCTCCCCCTCCTCGATGTGACAGGGTCTTCCCTCTCCATCCTTG
TCCTCTGCCTTGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGGGAGGC
ATGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTAGGGCAGGAGGAAGG
GAGAGAGGGATGAAGGGAGGGAGGGAGGGAAGGTGCATGGGCTTGTCCCT
GTAGGATCAGCCTGGCTCCTCGCTGTTGATCCTGATGCTATATTTGGAGA
TAAGAGAGGAAGAGGACGATGTAGCTGTAGATATGAGAAGAGATACACAC
CAGGTGGTCATAATGAGGTGTCAGATAAAAGAGGGAGGGAGGGAAAGAGG
GAGGGCAGATTTCACTGAATATGTTCTCGTCTTCTCCTCGTTCTTAAGCT
CTTTCTTTATTTGTCTGCGCATGGGACGCATGTCTGACCCCCTTCTCCTC
CCCTCCTCCTTCCCTCCTTCTCTCTCCCAGGTCCTGGTCATTGTCATCGC
CTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGGATTGAGGG
AAGGCAGCTTGCAAGAGTTTTTGCATTTTATCCTGCAGATCACGTGCATG
CAAAACCCTTACACAACTCTATGACTCACATATAGGCTGACGTGCTAGAG
GACGTCGACCGCACTCGAAACAAGTCAAGCTCAGTACCAGAAAAGCAAAA
TGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGAC
CTGCTGAACTGGACGCTCAAACAGCAAGAAGAAGCATCTGCCGCAGACCC
CACTACCATCCCAGCAGCCGTCGGGCCTATTTCACACGAAAAAAAGCAAT
GGCTAGAGCAGGTGATGGAGGGGACGTTTATGGACATGGCCACACGCTTG
CAAGGGCTGCTGGATGCTTTGGATAAGCTGCCGGACGAAAACGAAGCTGG
TAAGGAAAGTGACATTACGCGGACAACGACGCCTTCTCCTGCTGCTGCTG
TCGAGCAAGAAGGGCTGACCTCGACAGAGCGCGCCGAGGCGTTGTGGGAG
GAAGTACAAGAGCACGTGGAAAATCTCGATTACGCCTTGATGTTTTGCCA
GGCGGGTGGCTTGCCTACTCTCTTCCGATTCTTGCTGCAGGCCGCAGCGG
CGGCGGAGGACAAGGAAGCAGAGGCAAGGGCGGTCCCAGCGTTGGCGGTA
TTGGCGACGTTGACGCAGAATAATTTGCCCGTGCAGGAGCTTGTGCTTCA
ATTTCCGTTCGGGGAGGTGGAAGACAAGGATAAGAAGATAAGCATCAGCA
GCAATACCGGCAGCAGTGTGAGGGGTGTGATGCCTTTGCTGGCCAGTTTC
CTGATAAAGGGAGCGGATGACAGCAGCAGCAGCAGCGAACTTAACACTAG
AAGGAGCAGTCGCTTTCAAGCCAAAGCCCTGCAGGCTATTTCTTGCATTA
TCCGCGGCCACAGAGTAGCCGAAGCTGACTTCGTCCAGCACTTCGCTCTC
CGTGTTTTTATTGCTGCCTTGCAACCGAGCCAAGACGCACGTGTGCATGG
CAAGGCACTTTTCTTTCTTCAGGCCTTGCTAGGGGCGGACGATGCGACAC
GAGAGAGAGGAGAGGAGCTTGCGTCTTTGCTACCGTTGGTGGTTCCTTGT
CTGTTGGTGGAGGAAGATGAAGGGTTGCGACATACCGCGGCGTGCGTGGT
CTCAGAGATGACGAATTTATTGGGGGGACCGACGGTGGTATTTGGGAGGG
AGGGTGGAGAAGCGTTGAGGGAGGCAATGTTGAAAAGAAGGGATGTGATC
GAGAAGTTGGAAGGGGTAGAGAGGGAGGAGGCGGAGGACGAGTTGAGGTT
CTGGGAAGTTTTGGCGGGAGGAGGGGAGGGAAGGGTATTTTCGAGGGATG
GAGAGAGGGCTGGGTCAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCA
GCGGTAGAAGAAGGAGAGGCTGAGGACGTGGAGGGTGACGGTGGTCAGGC
CGCAGCAGCAGCGCCGGTCTTATTGCTGGCCCCGCCGCATTATTTGAGTG
GGGCGAGCAATGCGCCGTAGAGCACCAGATGAAGACAAATAAATAGCGTT
AAAATTTCATTGAACGACATTCCAAAAAATAATCAAAGGGAAAAAGCATC
TTGTGGCTGGCGCAAGGGATCCCTCTAGCCCTCCG back to topprotein sequence of NO04G03950.2 >NO04G03950.2-protein ID=NO04G03950.2-protein|Name=NO04G03950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MSGAEGSSSLGPDVWKDLLNWTLKQQEEASAADPTTIPAAVGPISHEKKQ
WLEQVMEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAA
VEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAA
AAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISIS
SNTGSSVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCI
IRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDAT
RERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGR
EGGEALREAMLKRRDVIEKLEGVEREEAEDELRFWEVLAGGGEGRVFSRD
GERAGSGGGGGAAAAAAAVEEGEAEDVEGDGGQAAAAAPVLLLAPPHYLS
GASNAP* back to topmRNA from alignment at chr4:1061262..1063807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03950.2 ID=NO04G03950.2|Name=NO04G03950.2|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp|location=Sequence derived from alignment at chr4:1061262..1063807- (Nannochloropsis oceanica)
TCCCCTCCCGCACCACCAACATCATCCCCAACCCCCTTTCTCCACCCCTC
CTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATCGCCTT
GCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGTGACACTGTTTTCA
TCAAGGTTGTCGGGAGCGGGATCGCATCCCTCCTGCTCGCCGTGGGGTTC
CGACGTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAAGGACTCTC
CCTCGGTCTCCCCCTCCTCGATGTGACAGGGTCTTCCCTCTCCATCCTTG
TCCTCTGCCTTGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGGGAGGC
ATGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTAGGGCAGGAGGAAGG
GAGAGAGGGATGAAGGGAGGGAGGGAGGGAAGGTGCATGGGCTTGTCCCT
GTAGGATCAGCCTGGCTCCTCGCTGTTGATCCTGATGCTATATTTGGAGA
TAAGAGAGGAAGAGGACGATGTAGCTGTAGATATGAGAAGAGATACACAC
CAGGTGGTCATAATGAGGTGTCAGATAAAAGAGGGAGGGAGGGAAAGAGG
GAGGGCAGATTTCACTGAATATGTTCTCGTCTTCTCCTCGTTCTTAAGCT
CTTTCTTTATTTGTCTGCGCATGGGACGCATGTCTGACCCCCTTCTCCTC
CCCTCCTCCTTCCCTCCTTCTCTCTCCCAGGTCCTGGTCATTGTCATCGC
CTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGGATTGAGGG
AAGGCAGCTTGCAAGAGTTTTTGCATTTTATCCTGCAGATCACGTGCATG
CAAAACCCTTACACAACTCTATGACTCACATATAGGCTGACGTGCTAGAG
GACGTCGACCGCACTCGAAACAAGTCAAGCTCAGTACCAGAAAAGCAAAA
TGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGAC
CTGCTGAACTGGTACGTCTACATAGAGACGTGCTGAACGTGGGCGGGATA
AATGTGCGAGAAGATGCATTAAAAACTCTAACCCTTCTCACTTGGTTCCG
CCTCCCACCCCATCATAATTAGGACGCTCAAACAGCAAGAAGAAGCATCT
GCCGCAGACCCCACTACCATCCCAGCAGCCGTCGGGCCTATTTCACACGA
AAAAAAGCAATGGCTAGAGCAGGTGATGGAGGGGACGTTTATGGACATGG
CCACACGCTTGCAAGGGCTGCTGGATGCTTTGGATAAGCTGCCGGACGAA
AACGAAGCTGGTAAGGAAAGTGACATTACGCGGACAACGACGCCTTCTCC
TGCTGCTGCTGTCGAGCAAGAAGGGCTGACCTCGACAGAGCGCGCCGAGG
CGTTGTGGGAGGAAGTACAAGAGCACGTGGAAAATCTCGATTACGCCTTG
ATGTTTTGCCAGGCGGGTGGCTTGCCTACTCTCTTCCGATTCTTGCTGCA
GGCCGCAGCGGCGGCGGAGGACAAGGAAGCAGAGGCAAGGGCGGTCCCAG
CGTTGGCGGTATTGGCGACGTTGACGCAGAATAATTTGCCCGTGCAGGAG
CTTGTGCTTCAATTTCCGTTCGGGGAGGTGGAAGACAAGGATAAGAAGAT
AAGCATCAGCAGCAATACCGGCAGCAGTGTGAGGGGTGTGATGCCTTTGC
TGGCCAGTTTCCTGATAAAGGGAGCGGATGACAGCAGCAGCAGCAGCGAA
CTTAACACTAGAAGGAGCAGTCGCTTTCAAGCCAAAGCCCTGCAGGCTAT
TTCTTGCATTATCCGCGGCCACAGAGTAGCCGAAGCTGACTTCGTCCAGC
ACTTCGCTCTCCGTGTTTTTATTGCTGCCTTGCAACCGAGCCAAGACGCA
CGTGTGCATGGCAAGGCACTTTTCTTTCTTCAGGCCTTGCTAGGGGCGGA
CGATGCGACACGAGAGAGAGGAGAGGAGCTTGCGTCTTTGCTACCGTTGG
TGGTTCCTTGTCTGTTGGTGGAGGAAGATGAAGGGTTGCGACATACCGCG
GCGTGCGTGGTCTCAGAGATGACGAATTTATTGGGGGGACCGACGGTGGT
ATTTGGGAGGGAGGGTGGAGAAGCGTTGAGGGAGGCAATGTTGAAAAGAA
GGGATGTGATCGAGAAGTTGGAAGGGGTAGAGAGGGAGGAGGCGGAGGAC
GAGTTGAGGTTCTGGGAAGTTTTGGCGGGAGGAGGGGAGGGAAGGGTATT
TTCGAGGGATGGAGAGAGGGCTGGGTCAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCGGTAGAAGAAGGAGAGGCTGAGGACGTGGAGGGTGAC
GGTGGTCAGGCCGCAGCAGCAGCGCCGGTCTTATTGCTGGCCCCGCCGCA
TTATTTGAGTGGGGCGAGCAATGCGCCGTAGAGCACCAGATGAAGACAAA
TAAATAGCGTTAAAATTTCATTGAACGACATTCCAAAAAATAATCAAAGG
GAAAAAGCATCTTGTGGCTGGCGCAAGGGATCCCTCTAGCCCTCCG back to topCoding sequence (CDS) from alignment at chr4:1061262..1063807- >NO04G03950.2 ID=NO04G03950.2|Name=NO04G03950.2|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr4:1061262..1063807- (Nannochloropsis oceanica)
ATGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGA
CCTGCTGAACTGGACGCTCAAACAGCAAGAAGAAGCATCTGCCGCAGACC
CCACTACCATCCCAGCAGCCGTCGGGCCTATTTCACACGAAAAAAAGCAA
TGGCTAGAGCAGGTGATGGAGGGGACGTTTATGGACATGGCCACACGCTT
GCAAGGGCTGCTGGATGCTTTGGATAAGCTGCCGGACGAAAACGAAGCTG
GTAAGGAAAGTGACATTACGCGGACAACGACGCCTTCTCCTGCTGCTGCT
GTCGAGCAAGAAGGGCTGACCTCGACAGAGCGCGCCGAGGCGTTGTGGGA
GGAAGTACAAGAGCACGTGGAAAATCTCGATTACGCCTTGATGTTTTGCC
AGGCGGGTGGCTTGCCTACTCTCTTCCGATTCTTGCTGCAGGCCGCAGCG
GCGGCGGAGGACAAGGAAGCAGAGGCAAGGGCGGTCCCAGCGTTGGCGGT
ATTGGCGACGTTGACGCAGAATAATTTGCCCGTGCAGGAGCTTGTGCTTC
AATTTCCGTTCGGGGAGGTGGAAGACAAGGATAAGAAGATAAGCATCAGC
AGCAATACCGGCAGCAGTGTGAGGGGTGTGATGCCTTTGCTGGCCAGTTT
CCTGATAAAGGGAGCGGATGACAGCAGCAGCAGCAGCGAACTTAACACTA
GAAGGAGCAGTCGCTTTCAAGCCAAAGCCCTGCAGGCTATTTCTTGCATT
ATCCGCGGCCACAGAGTAGCCGAAGCTGACTTCGTCCAGCACTTCGCTCT
CCGTGTTTTTATTGCTGCCTTGCAACCGAGCCAAGACGCACGTGTGCATG
GCAAGGCACTTTTCTTTCTTCAGGCCTTGCTAGGGGCGGACGATGCGACA
CGAGAGAGAGGAGAGGAGCTTGCGTCTTTGCTACCGTTGGTGGTTCCTTG
TCTGTTGGTGGAGGAAGATGAAGGGTTGCGACATACCGCGGCGTGCGTGG
TCTCAGAGATGACGAATTTATTGGGGGGACCGACGGTGGTATTTGGGAGG
GAGGGTGGAGAAGCGTTGAGGGAGGCAATGTTGAAAAGAAGGGATGTGAT
CGAGAAGTTGGAAGGGGTAGAGAGGGAGGAGGCGGAGGACGAGTTGAGGT
TCTGGGAAGTTTTGGCGGGAGGAGGGGAGGGAAGGGTATTTTCGAGGGAT
GGAGAGAGGGCTGGGTCAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGC
AGCGGTAGAAGAAGGAGAGGCTGAGGACGTGGAGGGTGACGGTGGTCAGG
CCGCAGCAGCAGCGCCGGTCTTATTGCTGGCCCCGCCGCATTATTTGAGT
GGGGCGAGCAATGCGCCGTAG back to top
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