NO04G03810.1, NO04G03810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03810.1
Unique NameNO04G03810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1491
Alignment locationchr4:1026787..1028835 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1026787..1028835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G03810.1 vs.
Match: EWM28790.1 (phosphoribosylglycinamide synthetase [Nannochloropsis gaditana]; EWM28791.1 phosphoribosylglycinamide synthetase [Nannochloropsis gaditana])

HSP 1 Score: 458.0 bits (1177), Expect = 3.800e-125
Identity = 221/302 (73.18%), Postives = 258/302 (85.43%), Query Frame = 0 
Query:  198 LVVKPLRSAGTENVAFVSSLEEAKIAFNVILGDQNLFGETNDKVLVQEFLSGKEYVVDCVSKDGMHKCVAIWVYDKAPCNGSKFVYFGVNLFESEDGVIEERVTDYVFNVLDALDIKEGPSHAEVMWLDSEDQPCLVEVGARPHGGEGTFTELSTPCISYNQLSVTLDALENNGKFELLPTRPKKLKAHSREVTLVSREEGLLIAYPMLEEVRALQSYKSMEIKVLPGQDISLTVDFLSTPGSIMLVHPDLEVVVKDYDQIHRWEEEGRFYELAE------EEEEKEGGGWRESGLKRRRSK 494
            +V+KP+RSAGTENV FVSSL EA+ AF  ILG+ NLFGE NDKVL QEFL G+EYVVDCVSK G+HKCVAIW YDKAPCNGSKFVYFGVNLFES DG  EER+TDY+F VLDAL I+EGP+H+EV+WL+ EDQPCL+EVGARPHGGEGTFTELSTPC+SYNQLSVTLDA+E+NGKFE LP RP +LKAH+RE TLVSR+ G+L+AYPML+EVRAL+SYKSME+KV+PGQDI LTVDFLSTPGS+MLVH D EVVV+DY+QIH WE +G FYE+ E      EE  +E GG +  G + + +K
Sbjct:    1 MVLKPVRSAGTENVFFVSSLTEARRAFKAILGEANLFGERNDKVLAQEFLQGQEYVVDCVSKGGIHKCVAIWAYDKAPCNGSKFVYFGVNLFESGDGAREERMTDYIFGVLDALGIREGPTHSEVIWLEGEDQPCLIEVGARPHGGEGTFTELSTPCVSYNQLSVTLDAIEDNGKFEALPRRPGRLKAHAREATLVSRQAGVLLAYPMLDEVRALRSYKSMEMKVVPGQDIPLTVDFLSTPGSVMLVHADWEVVVRDYEQIHAWEADGSFYEVVEDGVEGDEEGREEKGGEKAKGGEMKAAK 302
The following BLAST results are available for this feature:
BLAST of NO04G03810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28790.13.800e-12573.18phosphoribosylglycinamide synthetase [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03810NO04G03810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03810.1NO04G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03810.1.cds1NO04G03810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03810.1.cds2NO04G03810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03810.1.cds3NO04G03810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03810.1 ID=NO04G03810.1|Name=NO04G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
ATGCCCCACTCAGAGATCTATGGTACCACGCCCACGCCGCTTCCAGAGGG
CTACGTCAGACGGCGACGCCTGAGCAGTACCAGCGGCCGCCGAGCTATCG
TGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTCTGGCGCAGATGGCCCGC
GACCGTGGTTACGCCATCATCCGCGTCCTCTCCACCACCTTCTCCGATGA
GGTCCTCGCCATGCTCCCTGTCGCCTGCAAAGACCTACAATTTGCTGCTT
CGATCCAGCATACTGGGGACGTGGACGCAACCGTTGCCTCCATTCGGGCC
TTGGGTGGGGGCCCTCATAATGGTCTTTTTGAAATCATTGGCTTGACCTG
TGGATGTGAGAGTGGGGTGGAGCTCGCAGATGCCGTCTCGGCCCGGTATG
GGAAACCGTTCAAGACAAATGGGGAAGAGCTGATGCATCACCGACGGGAC
AAGTACTTGATGGGGGAGAAAGTGAGGGAGGCAGGGCTGAGGGCCGCGAA
GCAGGTGGAGACGGATACGTGGGAGGAGCTCAAGGCGTTCGCGGAGGACA
TCTTTGGAAAAGAAGAGGACGGCGGAATGGAGAATATACAGCTTGTGGTG
AAGCCATTGAGATCGGCAGGGACGGAGAATGTTGCTTTTGTGTCTAGTCT
TGAGGAGGCTAAGATAGCGTTTAATGTAATATTGGGGGATCAGAATTTGT
TTGGCGAGACGAATGACAAGGTTTTGGTGCAGGAGTTTTTGTCTGGAAAA
GAGTATGTGGTGGATTGTGTATCAAAAGACGGGATGCACAAGTGCGTGGC
GATTTGGGTGTATGACAAGGCCCCCTGCAATGGGTCAAAATTCGTCTATT
TCGGCGTCAATCTCTTTGAAAGCGAAGACGGCGTGATCGAGGAACGCGTG
ACCGACTACGTTTTTAATGTCCTCGACGCCCTCGACATTAAAGAAGGGCC
CTCCCACGCGGAGGTCATGTGGTTGGATTCGGAAGACCAACCGTGCCTAG
TGGAGGTCGGCGCCAGGCCCCACGGGGGCGAAGGGACATTCACCGAGCTA
TCCACCCCCTGTATTAGCTATAATCAATTATCAGTCACCTTAGATGCGCT
GGAGAACAATGGTAAGTTCGAATTGCTTCCCACGAGGCCCAAGAAGCTCA
AAGCCCACTCAAGGGAAGTGACGCTGGTCTCGAGGGAGGAAGGGCTGCTG
ATTGCCTACCCTATGTTGGAAGAAGTGAGGGCGTTGCAGAGCTATAAAAG
TATGGAGATTAAGGTCCTGCCAGGACAGGACATCTCCTTGACTGTGGATT
TTCTGTCGACCCCGGGGAGTATCATGCTGGTGCATCCGGATCTAGAGGTG
GTGGTGAAGGATTACGATCAAATTCATAGGTGGGAGGAGGAGGGGCGTTT
TTATGAGTTGGCGGAGGAGGAGGAGGAGAAGGAGGGGGGGGGATGGAGGG
AGAGTGGGCTAAAGAGACGAAGGTCTAAGTGTGTGCTGTGA
back to top

protein sequence of NO04G03810.1

>NO04G03810.1-protein ID=NO04G03810.1-protein|Name=NO04G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MPHSEIYGTTPTPLPEGYVRRRRLSSTSGRRAIVVVDPLSSGALLAQMAR
DRGYAIIRVLSTTFSDEVLAMLPVACKDLQFAASIQHTGDVDATVASIRA
LGGGPHNGLFEIIGLTCGCESGVELADAVSARYGKPFKTNGEELMHHRRD
KYLMGEKVREAGLRAAKQVETDTWEELKAFAEDIFGKEEDGGMENIQLVV
KPLRSAGTENVAFVSSLEEAKIAFNVILGDQNLFGETNDKVLVQEFLSGK
EYVVDCVSKDGMHKCVAIWVYDKAPCNGSKFVYFGVNLFESEDGVIEERV
TDYVFNVLDALDIKEGPSHAEVMWLDSEDQPCLVEVGARPHGGEGTFTEL
STPCISYNQLSVTLDALENNGKFELLPTRPKKLKAHSREVTLVSREEGLL
IAYPMLEEVRALQSYKSMEIKVLPGQDISLTVDFLSTPGSIMLVHPDLEV
VVKDYDQIHRWEEEGRFYELAEEEEEKEGGGWRESGLKRRRSKCVL*
back to top

mRNA from alignment at chr4:1026787..1028835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03810.1 ID=NO04G03810.1|Name=NO04G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at chr4:1026787..1028835- (Nannochloropsis oceanica)
ATGCCCCACTCAGAGATCTATGGTACCACGCCCACGCCGCTTCCAGAGGG
CTACGTCAGACGGCGACGCCTGAGCAGTACCAGCGGCCGCCGAGCTATCG
TGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTCTGGCGCAGGTACGCGCT
ATATTCTGCTACGCGGGGTTTAACCTTTGTCCCTGTGTGATGACCAGTTG
TGTTGAAGCACCATTGATCTTGCAGGGGGAAATCTGAGGCAAAAAAAGTC
GTGCGCTCTGTGACCTCTCAAATTTTCTCTGCATCATCTACTTCCCTCTC
CTGCGTCCATCACCTGTACAAGTGTGATTCACATCCCTCACCATAATGCT
GTTGGCATACATGCCCGCACCACTATTTTGAATTGACTTCTATATCTTTA
TGATTTAATATTCCATTTTTTTTTTGCCGCTCTATCTCGTCATATTTACC
CTGTAATCTCCCCCCCTCCAACCCCCTTCAGATGGCCCGCGACCGTGGTT
ACGCCATCATCCGCGTCCTCTCCACCACCTTCTCCGATGAGGTCCTCGCC
ATGCTCCCTGTCGCCTGCAAAGACCTACAATTTGCTGCTTCGATCCAGCA
TACTGGGGACGTGGACGCAACCGTTGCCTCCATTCGGGCCTTGGGTGGGG
GCCCTCATAATGGTCTTTTTGAAATCATTGGCTTGACCTGTGGATGTGAG
AGTGGGGTGGAGCTCGCAGATGCCGTCTCGGCCCGGTATGGGAAACCGTT
CAAGACAAATGGGGAAGAGCTGATGCATCACCGACGGGACAAGTACTTGA
TGGGGGAGAAAGTGAGGGAGGCAGGGCTGAGGGCCGCGAAGCAGGTGGAG
ACGGATACGTGGGAGGAGCTCAAGGCGTTCGCGGAGGACATCTTTGGAAA
AGAAGAGGACGGCGGAATGGAGAATATACAGCTTGTGGTGAAGCCATTGA
GATCGGCAGGGACGGAGAATGTTGCTTTTGTGTCTAGTCTTGAGGAGGCT
AAGATAGCGTTTAATGTAATATTGGGGGATCAGAATTTGTTTGGCGAGAC
GAATGACAAGGTTTTGGTGCAGGAGTTTTTGTCTGGAAAAGAGTATGTGG
TGGATTGTGTATCAAAAGACGGGATGCACAAGTGCGTGGCGATTTGGGTG
TATGACAAGGTAAGATGGAGGAGGGAGGGAGGGAGGGAGGGGGGAAGGGA
GTCGTACGCGTTTGTATTTGTCTTCAACTCCCACTGGTACCGATTGCGTT
TCGTGACCACCCCTACTTTCTTTGCTTCGTCTGTGAATGTAGCTACCTAA
GTCTTTCTGTTGGCTTTATACACAACTCATCCTCTCTCCCTCGGTCCCTC
CCCTTCTTCCTTCCCTCCCTCCCCTAGGCCCCCTGCAATGGGTCAAAATT
CGTCTATTTCGGCGTCAATCTCTTTGAAAGCGAAGACGGCGTGATCGAGG
AACGCGTGACCGACTACGTTTTTAATGTCCTCGACGCCCTCGACATTAAA
GAAGGGCCCTCCCACGCGGAGGTCATGTGGTTGGATTCGGAAGACCAACC
GTGCCTAGTGGAGGTCGGCGCCAGGCCCCACGGGGGCGAAGGGACATTCA
CCGAGCTATCCACCCCCTGTATTAGCTATAATCAATTATCAGTCACCTTA
GATGCGCTGGAGAACAATGGTAAGTTCGAATTGCTTCCCACGAGGCCCAA
GAAGCTCAAAGCCCACTCAAGGGAAGTGACGCTGGTCTCGAGGGAGGAAG
GGCTGCTGATTGCCTACCCTATGTTGGAAGAAGTGAGGGCGTTGCAGAGC
TATAAAAGTATGGAGATTAAGGTCCTGCCAGGACAGGACATCTCCTTGAC
TGTGGATTTTCTGTCGACCCCGGGGAGTATCATGCTGGTGCATCCGGATC
TAGAGGTGGTGGTGAAGGATTACGATCAAATTCATAGGTGGGAGGAGGAG
GGGCGTTTTTATGAGTTGGCGGAGGAGGAGGAGGAGAAGGAGGGGGGGGG
ATGGAGGGAGAGTGGGCTAAAGAGACGAAGGTCTAAGTGTGTGCTGTGA
back to top

Coding sequence (CDS) from alignment at chr4:1026787..1028835-

>NO04G03810.1 ID=NO04G03810.1|Name=NO04G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr4:1026787..1028835- (Nannochloropsis oceanica)
ATGCCCCACTCAGAGATCTATGGTACCACGCCCACGCCGCTTCCAGAGGG
CTACGTCAGACGGCGACGCCTGAGCAGTACCAGCGGCCGCCGAGCTATCG
TGGTGGTGGATCCCTTGAGCAGCGGTGCCCTTCTGGCGCAGATGGCCCGC
GACCGTGGTTACGCCATCATCCGCGTCCTCTCCACCACCTTCTCCGATGA
GGTCCTCGCCATGCTCCCTGTCGCCTGCAAAGACCTACAATTTGCTGCTT
CGATCCAGCATACTGGGGACGTGGACGCAACCGTTGCCTCCATTCGGGCC
TTGGGTGGGGGCCCTCATAATGGTCTTTTTGAAATCATTGGCTTGACCTG
TGGATGTGAGAGTGGGGTGGAGCTCGCAGATGCCGTCTCGGCCCGGTATG
GGAAACCGTTCAAGACAAATGGGGAAGAGCTGATGCATCACCGACGGGAC
AAGTACTTGATGGGGGAGAAAGTGAGGGAGGCAGGGCTGAGGGCCGCGAA
GCAGGTGGAGACGGATACGTGGGAGGAGCTCAAGGCGTTCGCGGAGGACA
TCTTTGGAAAAGAAGAGGACGGCGGAATGGAGAATATACAGCTTGTGGTG
AAGCCATTGAGATCGGCAGGGACGGAGAATGTTGCTTTTGTGTCTAGTCT
TGAGGAGGCTAAGATAGCGTTTAATGTAATATTGGGGGATCAGAATTTGT
TTGGCGAGACGAATGACAAGGTTTTGGTGCAGGAGTTTTTGTCTGGAAAA
GAGTATGTGGTGGATTGTGTATCAAAAGACGGGATGCACAAGTGCGTGGC
GATTTGGGTGTATGACAAGGCCCCCTGCAATGGGTCAAAATTCGTCTATT
TCGGCGTCAATCTCTTTGAAAGCGAAGACGGCGTGATCGAGGAACGCGTG
ACCGACTACGTTTTTAATGTCCTCGACGCCCTCGACATTAAAGAAGGGCC
CTCCCACGCGGAGGTCATGTGGTTGGATTCGGAAGACCAACCGTGCCTAG
TGGAGGTCGGCGCCAGGCCCCACGGGGGCGAAGGGACATTCACCGAGCTA
TCCACCCCCTGTATTAGCTATAATCAATTATCAGTCACCTTAGATGCGCT
GGAGAACAATGGTAAGTTCGAATTGCTTCCCACGAGGCCCAAGAAGCTCA
AAGCCCACTCAAGGGAAGTGACGCTGGTCTCGAGGGAGGAAGGGCTGCTG
ATTGCCTACCCTATGTTGGAAGAAGTGAGGGCGTTGCAGAGCTATAAAAG
TATGGAGATTAAGGTCCTGCCAGGACAGGACATCTCCTTGACTGTGGATT
TTCTGTCGACCCCGGGGAGTATCATGCTGGTGCATCCGGATCTAGAGGTG
GTGGTGAAGGATTACGATCAAATTCATAGGTGGGAGGAGGAGGGGCGTTT
TTATGAGTTGGCGGAGGAGGAGGAGGAGAAGGAGGGGGGGGGATGGAGGG
AGAGTGGGCTAAAGAGACGAAGGTCTAAGTGTGTGCTGTGA
back to top
Synonyms
Publications