NO04G03780.1, NO04G03780.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03780.1
Unique Name	NO04G03780.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1728
Alignment location	chr4:1018775..1022075 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1018775..1022075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G03780.1 vs.
Match: EWM28674.1 (amino acid permease-associated region [Nannochloropsis gaditana])

HSP 1 Score: 451.1 bits (1159), Expect = 5.300e-123
Identity = 232/312 (74.36%), Postives = 258/312 (82.69%), Query Frame = 0

Query:  154 VFFSYVGFDTIASSSEECKDPLRDLPRAILVSLGVCVGIYCVVCLILTGMVPYDMIDLAAPLSSAFAGLGLAWVPAVISLGGVVGLATTLLIGLFAQARIWLGIARDGLLPGFLAEIHPRFKTPFRAQMLCGVLPMCLSAFFNVKLLAELLDVGVILAYGTVCAAVLVQRSTTRVNTTRWLVLLLPACALPFALHKYNVHTGIWAMDTILLLLPIAALVPLVRPGDYPAPAHGVCFACPAVPYLPLAGVVLNVYLGVNLNSAAWLRLAVLWAGLLVHYVWTEHQYFHGNGEKRGRQFGERSGSRRYEGTENG 466
            VFFSYVGFDTIASSSEEC+DPLRD+PRAILVSL  CVGIYC VCL+LTGMVP+D IDLAAPLSSAFAGLGLAWV AVISLGGVVGLATTLLIGLFAQARIWLGIARDGLLP  LA IHPRFKTP  AQ LCG LPM L+AFFNV+LL+ELLD+GVILAYGTVCAA+L+QRST RV TTR LV LLPACALP +LHKY   TGI A+DT + L P+  LVPL+RPGDY AP  GVCFACPAVPY+P+AGVVLNVYL VNL + AW RL +LW G+L++YVWTE+ YF    ++R          R  + TENG
Sbjct:  248 VFFSYVGFDTIASSSEECQDPLRDMPRAILVSLATCVGIYCAVCLVLTGMVPFDAIDLAAPLSSAFAGLGLAWVQAVISLGGVVGLATTLLIGLFAQARIWLGIARDGLLPAALARIHPRFKTPVNAQALCGFLPMALAAFFNVRLLSELLDIGVILAYGTVCAALLLQRSTRRVYTTRCLVALLPACALPLSLHKYKASTGILALDTAIWLSPLFVLVPLLRPGDYLAPPPGVCFACPAVPYVPVAGVVLNVYLAVNLPAVAWARLFILWTGILLYYVWTEYGYFLRGDDRRDVGARRTRKERPKDVTENG 559

The following BLAST results are available for this feature:

BLAST of NO04G03780.1 vs.

BLAST of NO04G03780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28674.1	5.300e-123	74.36	amino acid permease-associated region [Nannochloro...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G03780	NO04G03780	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03780.1	NO04G03780.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03780.1.cds1	NO04G03780.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03780.1.cds2	NO04G03780.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03780.1.cds3	NO04G03780.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03780.1.cds4	NO04G03780.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03780.1.cds5	NO04G03780.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03780.1.cds6	NO04G03780.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1018775..1022075+
coding sequence from alignment at chr4:1018775..1022075+

mRNA sequence

>NO04G03780.1 ID=NO04G03780.1|Name=NO04G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ATGGTACCCTCCAGCAAGTCGGCATCTTTTTGGAGCCATTTATTAGGCCG
GGCCTTCCACAAGAAGTGCGACGCTGAAGAGCCAGGCCTACGGCCCCCGT
CGCCCACAGAGTCTTTCAAGTCAAGCAGCGGCAAAGATGGCCACCATGTA
TTTCACCACCTAAAGCGCCAACTCGGTTTCTGGCAGTTGACGATGCTGGG
CGTCGGTGGCTCAATTGGCGCTGGCGTTTTCTCCCTGACCGGGGTCGCTG
CCGCAAGCGCGGGCCCGGCAGTCGTGTTTAGCTTCATCTTCAGCGGTATC
ATAGCGGCCATCGACGCGTTGTGCTATTCGGAGATGGCTTCACGGTACCC
TCAAGCGGGAACTGTCTTTTTGTACAATCATATCACGTTTGGAGAGCTCC
CTGCCCTGCTTGGGCACCGAGACGGGGGCCGTACTAAATGTGATTTTGAC
GAGTATCAAGTTTTTTTTTCTTATGTAGGCTTCGACACCATAGCTTCTTC
CTCTGAAGAATGCAAGGATCCTTTGCGGGATTTGCCACGTGCAATCCTAG
TGAGTCTGGGCGTGTGCGTGGGTATCTATTGTGTTGTTTGTTTAATTTTG
ACTGGCATGGTGCCTTACGATATGATTGATCTGGCTGCACCGCTTTCGTC
GGCTTTTGCGGGGTTGGGATTAGCGTGGGTTCCGGCTGTGATTAGTCTGG
GGGGGGTTGTTGGGCTTGCGACTACGCTTTTGATTGGTTTGTTTGCACAG
GCAAGGATCTGGTTGGGGATAGCCCGGGATGGTCTTTTGCCAGGCTTCCT
GGCGGAGATTCACCCACGATTTAAAACGCCGTTTAGAGCGCAGATGTTGT
GTGGTGTATTACCTATGTGTTTGTCTGCCTTTTTCAACGTGAAATTACTG
GCGGAGTTGCTGGATGTGGGAGTTATTTTGGCGTATGGCACAGTTTGTGC
GGCTGTCTTAGTGCAGCGGTCGACGACAAGAGTAAATACGACCAGATGGC
TTGTGTTGCTGCTGCCGGCGTGTGCTTTGCCGTTTGCATTGCATAAATAC
AACGTACACACGGGAATTTGGGCCATGGACACAATCCTTTTATTGCTCCC
GATTGCTGCGTTGGTGCCTTTGGTACGACCGGGAGATTACCCGGCGCCTG
CGCATGGTGTGTGTTTTGCTTGCCCGGCTGTGCCTTATCTACCGCTGGCG
GGAGTGGTTCTCAACGTATATTTAGGGGTAAATTTGAATAGTGCCGCGTG
GTTGCGTTTGGCAGTGCTGTGGGCGGGCTTGTTGGTGCATTATGTTTGGA
CGGAACACCAGTATTTTCATGGAAATGGGGAGAAGCGTGGAAGGCAGTTT
GGAGAGAGAAGTGGCAGCAGACGTTATGAAGGAACAGAGAACGGTGTGCA
CTCTACCATGTCCGTCGTGGCCAAGATCTGGGACAGCCTGCGAACGTCCT
ACACCAGGATGGTGGTGGGAGAGCTCAACAACTACGGCCTGCGTTACCAA
GATCTCTTCATAGAAGATCCCGCGGTGATCAAGGCAGTCCACCACCTTTC
TCCCGAAGAACAAGTCTCCCGTGAACGCCGAATTAAGCGCGCCATCGAGA
TTTCCCTTAAAAAGAAGTACTTACCCACGGACCTGCAAAAGATGCAAACG
CCCCTCAAGCCTTACCTCAGCCACGCCCTGGAGGAGGTAGAGGCGGAGGA
GACGGAGCGCAAGTTGCTAAATCCCTAG

protein sequence of NO04G03780.1

>NO04G03780.1-protein ID=NO04G03780.1-protein|Name=NO04G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MVPSSKSASFWSHLLGRAFHKKCDAEEPGLRPPSPTESFKSSSGKDGHHV
FHHLKRQLGFWQLTMLGVGGSIGAGVFSLTGVAAASAGPAVVFSFIFSGI
IAAIDALCYSEMASRYPQAGTVFLYNHITFGELPALLGHRDGGRTKCDFD
EYQVFFSYVGFDTIASSSEECKDPLRDLPRAILVSLGVCVGIYCVVCLIL
TGMVPYDMIDLAAPLSSAFAGLGLAWVPAVISLGGVVGLATTLLIGLFAQ
ARIWLGIARDGLLPGFLAEIHPRFKTPFRAQMLCGVLPMCLSAFFNVKLL
AELLDVGVILAYGTVCAAVLVQRSTTRVNTTRWLVLLLPACALPFALHKY
NVHTGIWAMDTILLLLPIAALVPLVRPGDYPAPAHGVCFACPAVPYLPLA
GVVLNVYLGVNLNSAAWLRLAVLWAGLLVHYVWTEHQYFHGNGEKRGRQF
GERSGSRRYEGTENGVHSTMSVVAKIWDSLRTSYTRMVVGELNNYGLRYQ
DLFIEDPAVIKAVHHLSPEEQVSRERRIKRAIEISLKKKYLPTDLQKMQT
PLKPYLSHALEEVEAEETERKLLNP*

mRNA from alignment at chr4:1018775..1022075+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G03780.1 ID=NO04G03780.1|Name=NO04G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3301bp|location=Sequence derived from alignment at chr4:1018775..1022075+ (Nannochloropsis oceanica)
ATGGTACCCTCCAGCAAGTCGGCATCTTTTTGGAGCCATTTATTAGGCCG
GGCCTTCCACAAGAAGTGCGACGCTGAAGAGCCAGGTGACTGTTTGCTTG
TTTGTGGTGAAGAGTGGTCTCTTGCCCCACACTATTCTCCCCGCGTGTGA
AAGCTCTGTATGCGGCACACAAGCCAACCGCCACCGAATTGTACTAGTGC
GTGTCAAAATAAAAGTCGACTCTCCTTGTCCTTTCCAGCGCAGTGCCACC
TGCTTCTTTGCTCCAGTACAATGATGCCCCCAGCCCCATCCGAGGCCCCC
AGCAATCTCACGCCACCTCTTCCCCCCCTCTATTCCCCCCGACAAAACAG
GCCTACGGCCCCCGTCGCCCACAGAGTCTTTCAAGTCAAGCAGCGGCAAA
GATGGCCACCATGTATTTCACCACCTAAAGCGCCAACTCGGTTTCTGGCA
GTTGACGATGCTGGGCGTCGGTGGCTCAATTGGCGCTGGCGTTTTCTCCC
TGACCGGGGTCGCTGCCGCAAGCGCGGGCCCGGCAGTCGTGTTTAGCTTC
ATCTTCAGCGGTATCATAGCGGCCATCGACGCGTTGTGCTATTCGGAGAT
GGCTTCACGGTACCCTCAAGCGGGAACTGTCTTTTTGTACAATCATATCA
CGTTTGGAGAGCTCCCTGCCCTGCTTGTGAGTATAAATTTGTTGGTGGAT
TACACTGTGGCTGCTGCTTTGATTGCCCGCTCTTTTGCCTTGTATCTTGT
TGAATTTCTCAAGCATGCTGGCTTAGGGCCCCTTCCTTCATGGTTGGCTT
CTTGGCCACTTACGGATATCATAAGTCTAAGTCTTGTTGCCCCCCTCCTT
CTACTTCTCCTCACTCTCGTCCTGTGTAGGGGCACCGAGACGGGGGCCGT
ACTAAATGTGATTTTGACGAGTATCAAGGTCGGTGTCATTTTGATTGTGT
GCGCTGTAGGGCTCTTCCATGTACACCCGCCCAATTGGGTGCCTTTCTTC
CCGCATGGGATCGAGAGTGTGTTTCGAACCTCTTCCACAGTTTTTTTTTC
TTATGTAGGCTTCGACACCATAGCTTCTTCCTCTGAAGAATGCAAGGATC
CTTTGCGGGATTTGCCACGTGCAATCCTAGTGAGTCTGGGCGTGTGCGTG
GGTATCTATTGTGTTGTTTGTTTAATTTTGACTGGCATGGTGCCTTACGA
TATGATTGATCTGGCTGCACCGCTTTCGTCGGCTTTTGCGGGGTTGGGAT
TAGCGTGGGTTCCGGCTGTGATTAGTCTGGGGGGGGTTGTTGGGCTTGCG
ACTACGCTTTTGATTGGTTTGTTTGCACAGGCAAGGATCTGGTTGGGGAT
AGCCCGGGATGGTCTTTTGCCAGGCTTCCTGGCGGAGATTCACCCACGAT
TTAAAACGCCGTTTAGAGCGCAGATGTTGTGTGGTGTATTACCTATGTGT
TTGTCTGCCTTTTTCAACGTGAAATTACTGGCGGAGTTGCTGGATGTGGG
AGTTATTTTGGCGTATGGCACAGTTTGTGCGGCTGTCTTAGTGCAGCGGT
CGACGACAAGAGTAAATACGACCAGATGGCTTGTGTTGCTGCTGCCGGCG
TGTGCTTTGCCGTTTGCATTGCATAAATACAACGTACACACGGGAATTTG
GGCCATGGACACAATCCTTTTATTGCTCCCGATTGCTGCGTTGGTGCCTT
TGGTACGACCGGGAGATTACCCGGCGCCTGCGCATGGTGTGTGTTTTGCT
TGCCCGGCTGTGCCTTATCTACCGCTGGCGGGAGTGGTTCTCAACGTATA
TTTAGGGGTAAATTTGAATAGTGCCGCGTGGTTGCGTTTGGCAGTGCTGT
GGGCGGGCTTGTTGGTGCATTATGTTTGGACGGAACACCAGTATTTTCAT
GGAAATGGGGAGAAGCGTGGAAGGCAGTTTGGAGAGAGAAGTGGCAGCAG
ACGTTATGAAGGAACAGAGAACGGTGTGGTACCTTACCCTCCGTTCGAAT
CGTTGCGGCGCCGTCGTGGGGTCGGGGGGGGAGGGTCAGGACAATCTCAG
TTTGGTGGTGGAGGGGGGGAGGAGGAGGAGGGGGGGAGAATTCATCTCGG
ACGCCCTTGTTGGACGGGGACGACGCCGTGTAGACTTACGTGTACAGACA
AGCACACATAAAATACGATCTGTTCAAAAATAATGCAAAAGAAATGATCA
AATTCAAATGACGAGGGAGAGGTGATCATAGAACGACCTTCTTCTTTTGT
TCGTTTTCAAATCGGGAAAGCATTGCCAATAAGCGAGGCAAGAGCGAGGG
TGGACCCGCAAGAAGTGCATCCAACACCCGAGCAAAGACAAGAACCATTG
CAAAACCAGCGCCCTGGAGGCTTACAGCGACCATTGGTCCCCATCCCATC
CCTCTATATTACCTATTTTGAACGAGAGGGCTGTTGGAAGAAGTTGGACG
ATAGGCGAAGTCTTTGGCTAACTCGCAAACATAAATTCAGGACAAGCCTT
CTTACCCTCACTTCTTTCATTCACTCATGGCTGGCTGCACTGTCAAAACC
CACACTACATACGCAGCACTCTACCATGTCCGTCGTGGCCAAGATCTGGG
ACAGCCTGCGAACGTCCTACACCAGGATGGTGGTGGGAGAGCTCAACAAC
TACGGTACGTCTTGCTTAAGCCTGCTAGACGTGGGCTCCCCCCATTTCTA
CCGGCTTGTTGTCGTCAAGTCCTGTTGTTCTCTCTTTCTATCCCTTCTCC
TGCTGCGAGATGTACGTGCACGTGTCAATGGTCTTGTCGTGTCTGCTGAG
GGCAGGCCCTTATTCGAGCTAAACTCTGCCTCCCATCCCATCATCGTGCT
TGGAGGCTGCCAGTATTTGCCATCCTCTACGCCTTGACAATGTGCGCCCT
ATGCTTGTGGCCACGTCAAGCTTTTCTTCTCTTGTAGTGCAAGCTTTTTT
TATGGTTATCTGTTTTGATTTTTCCTTCCTCCCTCACATCTTTTCACCGA
ATTCCTCTCCGACGAACTCACCCACCTACCTCATATCCCCTCCTTCCCCT
TCCCCTCAGGCCTGCGTTACCAAGATCTCTTCATAGAAGATCCCGCGGTG
ATCAAGGCAGTCCACCACCTTTCTCCCGAAGAACAAGTCTCCCGTGAACG
CCGAATTAAGCGCGCCATCGAGATTTCCCTTAAAAAGAAGTACTTACCCA
CGGACCTGCAAAAGATGCAAACGCCCCTCAAGCCTTACCTCAGCCACGCC
CTGGAGGAGGTAGAGGCGGAGGAGACGGAGCGCAAGTTGCTAAATCCCTA
G

Coding sequence (CDS) from alignment at chr4:1018775..1022075+

>NO04G03780.1 ID=NO04G03780.1|Name=NO04G03780.1|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at chr4:1018775..1022075+ (Nannochloropsis oceanica)
ATGGTACCCTCCAGCAAGTCGGCATCTTTTTGGAGCCATTTATTAGGCCG
GGCCTTCCACAAGAAGTGCGACGCTGAAGAGCCAGGCCTACGGCCCCCGT
CGCCCACAGAGTCTTTCAAGTCAAGCAGCGGCAAAGATGGCCACCATGTA
TTTCACCACCTAAAGCGCCAACTCGGTTTCTGGCAGTTGACGATGCTGGG
CGTCGGTGGCTCAATTGGCGCTGGCGTTTTCTCCCTGACCGGGGTCGCTG
CCGCAAGCGCGGGCCCGGCAGTCGTGTTTAGCTTCATCTTCAGCGGTATC
ATAGCGGCCATCGACGCGTTGTGCTATTCGGAGATGGCTTCACGGTACCC
TCAAGCGGGAACTGTCTTTTTGTACAATCATATCACGTTTGGAGAGCTCC
CTGCCCTGCTTGGGCACCGAGACGGGGGCCGTACTAAATGTGATTTTGAC
GAGTATCAAGTTTTTTTTTCTTATGTAGGCTTCGACACCATAGCTTCTTC
CTCTGAAGAATGCAAGGATCCTTTGCGGGATTTGCCACGTGCAATCCTAG
TGAGTCTGGGCGTGTGCGTGGGTATCTATTGTGTTGTTTGTTTAATTTTG
ACTGGCATGGTGCCTTACGATATGATTGATCTGGCTGCACCGCTTTCGTC
GGCTTTTGCGGGGTTGGGATTAGCGTGGGTTCCGGCTGTGATTAGTCTGG
GGGGGGTTGTTGGGCTTGCGACTACGCTTTTGATTGGTTTGTTTGCACAG
GCAAGGATCTGGTTGGGGATAGCCCGGGATGGTCTTTTGCCAGGCTTCCT
GGCGGAGATTCACCCACGATTTAAAACGCCGTTTAGAGCGCAGATGTTGT
GTGGTGTATTACCTATGTGTTTGTCTGCCTTTTTCAACGTGAAATTACTG
GCGGAGTTGCTGGATGTGGGAGTTATTTTGGCGTATGGCACAGTTTGTGC
GGCTGTCTTAGTGCAGCGGTCGACGACAAGAGTAAATACGACCAGATGGC
TTGTGTTGCTGCTGCCGGCGTGTGCTTTGCCGTTTGCATTGCATAAATAC
AACGTACACACGGGAATTTGGGCCATGGACACAATCCTTTTATTGCTCCC
GATTGCTGCGTTGGTGCCTTTGGTACGACCGGGAGATTACCCGGCGCCTG
CGCATGGTGTGTGTTTTGCTTGCCCGGCTGTGCCTTATCTACCGCTGGCG
GGAGTGGTTCTCAACGTATATTTAGGGGTAAATTTGAATAGTGCCGCGTG
GTTGCGTTTGGCAGTGCTGTGGGCGGGCTTGTTGGTGCATTATGTTTGGA
CGGAACACCAGTATTTTCATGGAAATGGGGAGAAGCGTGGAAGGCAGTTT
GGAGAGAGAAGTGGCAGCAGACGTTATGAAGGAACAGAGAACGGTGTGCA
CTCTACCATGTCCGTCGTGGCCAAGATCTGGGACAGCCTGCGAACGTCCT
ACACCAGGATGGTGGTGGGAGAGCTCAACAACTACGGCCTGCGTTACCAA
GATCTCTTCATAGAAGATCCCGCGGTGATCAAGGCAGTCCACCACCTTTC
TCCCGAAGAACAAGTCTCCCGTGAACGCCGAATTAAGCGCGCCATCGAGA
TTTCCCTTAAAAAGAAGTACTTACCCACGGACCTGCAAAAGATGCAAACG
CCCCTCAAGCCTTACCTCAGCCACGCCCTGGAGGAGGTAGAGGCGGAGGA
GACGGAGCGCAAGTTGCTAAATCCCTAG

Synonyms

Publications