NO04G03770.1, NO04G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03770.1
Unique NameNO04G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length810
Alignment locationchr4:1017380..1018189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1017380..1018189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03770.1 vs.
Match: EWM28771.1 (hypothetical protein Naga_100002g107 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 2.800e-34
Identity = 109/233 (46.78%), Postives = 143/233 (61.37%), Query Frame = 0 
Query:    1 MWKPGGRKPG----GGKVSSKNKSFSSSKSPTAGSAAATAPLVSPPGSKNLSKSTMGMRFMQKRMQRDAKAKEQAEHAKAARAAKWKVEQEGQQQQQGKESGGGSDKCSPQSISHHQQE--------QRRVVVFEAEETDPKMQVLGRRAFGGFNDMVARMWEQNAQLLGLGKKKRKR-EGDVDEWEVDEREMVSRYQKHGQLPIRTGDRVGGGGGGGGGGGGRGEGTSNQKR 221
            MW+PG RKPG    GGK +    +   S +PT           S P  + LS ST+GM+FMQKRMQ+DA+ K+QAE A AA+AAKW +E E +Q ++G  +         Q++   Q++        + R +VFE EETDP+ QVLGRRAFGGFN++VARM+EQN QLLGL K KR+R + D DE EV+E EMV RY++HG LP++  D   G     GGGG RG     Q +
Sbjct:    1 MWRPGARKPGRPSAGGKAAGSAPAAEVSPTPTN----------SAPKGRILSASTLGMKFMQKRMQKDAEMKQQAEQAMAAKAAKWTLEHETRQAEKGASTKAQDKNTISQTLQPEQKQSSDSLQLKRSRTMVFENEETDPRTQVLGRRAFGGFNEVVARMFEQNLQLLGLRKGKRRRGDDDADEKEVNEHEMVERYRRHGNLPVKR-DSNKGSEASRGGGGKRGRYAYQQPK 222
The following BLAST results are available for this feature:
BLAST of NO04G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28771.12.800e-3446.78hypothetical protein Naga_100002g107 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03770NO04G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03770.1NO04G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03770.1.cds1NO04G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03770.1 ID=NO04G03770.1|Name=NO04G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=810bp
ATGTGGAAGCCAGGCGGTCGGAAACCCGGCGGAGGGAAAGTAAGTAGCAA
AAACAAAAGCTTCAGCAGCAGCAAGTCCCCTACTGCAGGATCCGCTGCAG
CCACAGCGCCACTCGTCTCGCCACCAGGGAGCAAAAATCTAAGCAAGTCG
ACTATGGGCATGAGATTCATGCAAAAACGGATGCAACGGGACGCAAAGGC
CAAGGAGCAGGCGGAGCACGCGAAAGCGGCGCGAGCTGCCAAATGGAAGG
TGGAACAGGAGGGACAGCAGCAGCAGCAAGGCAAGGAGAGTGGTGGTGGA
AGTGACAAATGTTCACCACAGTCAATATCACATCATCAACAAGAGCAGCG
ACGGGTTGTGGTTTTCGAGGCGGAGGAGACAGACCCGAAGATGCAAGTGC
TAGGACGACGTGCATTCGGAGGGTTTAACGACATGGTGGCGAGGATGTGG
GAGCAAAATGCACAGCTGCTAGGTTTGGGCAAAAAGAAGCGAAAGCGGGA
AGGCGACGTGGATGAGTGGGAAGTCGATGAGCGGGAGATGGTATCTCGGT
ACCAGAAACATGGACAGTTGCCGATTAGAACTGGTGACCGTGTGGGTGGA
GGAGGTGGTGGAGGAGGAGGAGGGGGGGGAAGAGGGGAAGGTACCAGCAA
CCAGAAAAGAATGGGCGGCGAGGAGGAGGGGGAAATGGTGATCACAAATA
GCGAAATTATAGCAATCGGCATAGTGGGGATTCGGATAAAAAGCAGCGAA
GTCATGGTTCGCATGTGCATGTATAATTTGACGAAAAGCAAAAAGCAAGG
AAGCGCTTAG
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protein sequence of NO04G03770.1

>NO04G03770.1-protein ID=NO04G03770.1-protein|Name=NO04G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MWKPGGRKPGGGKVSSKNKSFSSSKSPTAGSAAATAPLVSPPGSKNLSKS
TMGMRFMQKRMQRDAKAKEQAEHAKAARAAKWKVEQEGQQQQQGKESGGG
SDKCSPQSISHHQQEQRRVVVFEAEETDPKMQVLGRRAFGGFNDMVARMW
EQNAQLLGLGKKKRKREGDVDEWEVDEREMVSRYQKHGQLPIRTGDRVGG
GGGGGGGGGGRGEGTSNQKRMGGEEEGEMVITNSEIIAIGIVGIRIKSSE
VMVRMCMYNLTKSKKQGSA*
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mRNA from alignment at chr4:1017380..1018189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03770.1 ID=NO04G03770.1|Name=NO04G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=810bp|location=Sequence derived from alignment at chr4:1017380..1018189+ (Nannochloropsis oceanica)
ATGTGGAAGCCAGGCGGTCGGAAACCCGGCGGAGGGAAAGTAAGTAGCAA
AAACAAAAGCTTCAGCAGCAGCAAGTCCCCTACTGCAGGATCCGCTGCAG
CCACAGCGCCACTCGTCTCGCCACCAGGGAGCAAAAATCTAAGCAAGTCG
ACTATGGGCATGAGATTCATGCAAAAACGGATGCAACGGGACGCAAAGGC
CAAGGAGCAGGCGGAGCACGCGAAAGCGGCGCGAGCTGCCAAATGGAAGG
TGGAACAGGAGGGACAGCAGCAGCAGCAAGGCAAGGAGAGTGGTGGTGGA
AGTGACAAATGTTCACCACAGTCAATATCACATCATCAACAAGAGCAGCG
ACGGGTTGTGGTTTTCGAGGCGGAGGAGACAGACCCGAAGATGCAAGTGC
TAGGACGACGTGCATTCGGAGGGTTTAACGACATGGTGGCGAGGATGTGG
GAGCAAAATGCACAGCTGCTAGGTTTGGGCAAAAAGAAGCGAAAGCGGGA
AGGCGACGTGGATGAGTGGGAAGTCGATGAGCGGGAGATGGTATCTCGGT
ACCAGAAACATGGACAGTTGCCGATTAGAACTGGTGACCGTGTGGGTGGA
GGAGGTGGTGGAGGAGGAGGAGGGGGGGGAAGAGGGGAAGGTACCAGCAA
CCAGAAAAGAATGGGCGGCGAGGAGGAGGGGGAAATGGTGATCACAAATA
GCGAAATTATAGCAATCGGCATAGTGGGGATTCGGATAAAAAGCAGCGAA
GTCATGGTTCGCATGTGCATGTATAATTTGACGAAAAGCAAAAAGCAAGG
AAGCGCTTAG
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Coding sequence (CDS) from alignment at chr4:1017380..1018189+

>NO04G03770.1 ID=NO04G03770.1|Name=NO04G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr4:1017380..1018189+ (Nannochloropsis oceanica)
ATGTGGAAGCCAGGCGGTCGGAAACCCGGCGGAGGGAAAGTAAGTAGCAA
AAACAAAAGCTTCAGCAGCAGCAAGTCCCCTACTGCAGGATCCGCTGCAG
CCACAGCGCCACTCGTCTCGCCACCAGGGAGCAAAAATCTAAGCAAGTCG
ACTATGGGCATGAGATTCATGCAAAAACGGATGCAACGGGACGCAAAGGC
CAAGGAGCAGGCGGAGCACGCGAAAGCGGCGCGAGCTGCCAAATGGAAGG
TGGAACAGGAGGGACAGCAGCAGCAGCAAGGCAAGGAGAGTGGTGGTGGA
AGTGACAAATGTTCACCACAGTCAATATCACATCATCAACAAGAGCAGCG
ACGGGTTGTGGTTTTCGAGGCGGAGGAGACAGACCCGAAGATGCAAGTGC
TAGGACGACGTGCATTCGGAGGGTTTAACGACATGGTGGCGAGGATGTGG
GAGCAAAATGCACAGCTGCTAGGTTTGGGCAAAAAGAAGCGAAAGCGGGA
AGGCGACGTGGATGAGTGGGAAGTCGATGAGCGGGAGATGGTATCTCGGT
ACCAGAAACATGGACAGTTGCCGATTAGAACTGGTGACCGTGTGGGTGGA
GGAGGTGGTGGAGGAGGAGGAGGGGGGGGAAGAGGGGAAGGTACCAGCAA
CCAGAAAAGAATGGGCGGCGAGGAGGAGGGGGAAATGGTGATCACAAATA
GCGAAATTATAGCAATCGGCATAGTGGGGATTCGGATAAAAAGCAGCGAA
GTCATGGTTCGCATGTGCATGTATAATTTGACGAAAAGCAAAAAGCAAGG
AAGCGCTTAG
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Synonyms
Publications