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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1013151..1014529 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03750.1 vs.
Match: EWM28688.1 (uncharacterized protein Naga_100002g105 [Nannochloropsis gaditana]) HSP 1 Score: 484.6 bits (1246), Expect = 2.500e-133 Identity = 237/343 (69.10%), Postives = 273/343 (79.59%), Query Frame = 0
Query: 1 MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLGWLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDARFDEMRASFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGFLVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLWLGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNERHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPPSTIVPTGKGKSEG---------------EVLRGSPNKTTNLIG 329
MAV W W ++LWLSALVTA LQ LTFLVAYL QFDKLTDISGASNFVLLGWLSY LG + Y RQ NT+LLT+WG RLGSYLLLRVVRRGHDARFDEMRASF RFGSFFVFQAFWVFLVT+PIL N+ DV +G +DY GW L+++GFLVE+WADQSKDAF+EQRR++ AS +RGIITTG W+WSRHPNYWGEITLWLGLFL+ S +FD PNNLPGA+ A ++SP+FTF+IL+FLSGCPLAE +YNERHGSE WYLAYR QTSPL+PLPP +YR LP W+K Y L +L M++ GL P G G +G V +GSPNKTT+LIG
Sbjct: 1 MAV-WAWPDVLWLSALVTAALQLLTFLVAYLFQFDKLTDISGASNFVLLGWLSYGLGGHSYSRQTTNTVLLTVWGARLGSYLLLRVVRRGHDARFDEMRASFVRFGSFFVFQAFWVFLVTMPILLSNSAPQDVDLGGRDYAGWTLFTLGFLVEVWADQSKDAFHEQRRTAPLAS-ARGIITTGPWAWSRHPNYWGEITLWLGLFLTSSRAFDAPNNLPGAYAAAVISPIFTFLILVFLSGCPLAEERYNERHGSEPWYLAYRTQTSPLLPLPPLIYRPLPLWLKRYALLELAMFEKGL------PAGAGGGDGGLGGRGGDNRAGGPVHVYQGSPNKTTDLIG 335
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp CCACAGGCCCTTCGTCGTTGCAAAATCAGAGCTCGGAATTCCCGGTCTAA TTCACAGCCTAACCCTGCGTTTCCCAGGAGATAAAAACTCGACATAAGTA CCGCAACCACAAGTACCCCTGCATCCCCACCTCGACGGAAGCATCATCAT CGCTAGCCTCCCGTGCGCAGACCAGTCACGCCCCGAGTGTCCCTGCATCC GCCCAGCTCAACGCAACCATGGCAGTCGCATGGACATGGTCCAATATCCT GTGGCTGTCCGCCCTAGTGACGGCCACCCTCCAGTTCCTGACTTTCCTCG TCGCTTACTTGCTGCAATTTGACAAGTTGACGGACATCTCGGGCGCCTCG AACTTCGTCCTGCTAGGCTGGTTGTCCTATGCCTTGGGAGCAAACCACTA CCGACGCCAGATTATAAATACCCTTCTCCTTACGATATGGGGTGTCCGGC TAGGGTCCTATCTATTGCTGCGAGTAGTTCGGCGTGGGCACGATGCCCGG TTTGATGAAATGAGGGCCAGCTTCGCACGATTTGGTTCCTTCTTTGTTTT TCAAGCGTTTTGGGTCTTCCTGGTGACGTTGCCTATCCTTTTTTGTAATG CCACGCGGCATGATGTACATATAGGGGCGCAAGACTATGTGGGGTGGATA TTGTGGAGTGTCGGATTTCTCGTTGAAATTTGGGCTGATCAAAGCAAAGA CGCTTTCAACGAACAACGTCGTTCTTCTACCTCGGCTTCATGTTCCCGCG GCATCATAACCACAGGATGTTGGTCCTGGTCACGGCATCCGAATTATTGG GGTGAAATCACTCTATGGCTGGGGCTCTTCCTATCCTGCTCCTCCTCCTT CGACGACCCCAACAACCTGCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCC CCGTTTTCACTTTTGTCATTCTCATGTTCTTGTCTGGATGTCCTTTGGCC GAGCGAAAGTACAACGAGCGGCATGGTTCCGAAGCGTGGTACTTGGCATA TCGCGCGCAGACCTCCCCCCTCATCCCTCTCCCTCCCTACCTCTATCGCT CCCTTCCTACTTGGGTGAAGAGTTATTTGCTGTTTGACCTAGAAATGTAC AAGAATGGGTTGCCTCCCTCGACTATAGTACCTACTGGGAAGGGGAAAAG CGAGGGAGAGGTTTTGAGAGGGAGTCCGAACAAAACGACGAACCTGATAG GGGGGGCAAAGGGCCGTCCTGGAGTGTAGATATGGCGGCGCCTGCAAGGT GAATGCACACTGCAGGTACAGCAACTCTTGTGGGGAAAAATCAATGTACA TAAATATTTTATTTTTTTCATAAATATACTCATTAATACGTGTATAAATA TGATCACAAATGACAATCAAATCGACTTT back to topprotein sequence of NO04G03750.1 >NO04G03750.1-protein ID=NO04G03750.1-protein|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLG WLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDARFDEMRA SFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGF LVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLW LGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNE RHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPP STIVPTGKGKSEGEVLRGSPNKTTNLIGGAKGRPGV* back to topmRNA from alignment at chr4:1013151..1014529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at chr4:1013151..1014529- (Nannochloropsis oceanica) CCACAGGCCCTTCGTCGTTGCAAAATCAGAGCTCGGAATTCCCGGTCTAA
TTCACAGCCTAACCCTGCGTTTCCCAGGAGATAAAAACTCGACATAAGTA
CCGCAACCACAAGTACCCCTGCATCCCCACCTCGACGGAAGCATCATCAT
CGCTAGCCTCCCGTGCGCAGACCAGTCACGCCCCGAGTGTCCCTGCATCC
GCCCAGCTCAACGCAACCATGGCAGTCGCATGGACATGGTCCAATATCCT
GTGGCTGTCCGCCCTAGTGACGGCCACCCTCCAGTTCCTGACTTTCCTCG
TCGCTTACTTGCTGCAATTTGACAAGTTGACGGACATCTCGGGCGCCTCG
AACTTCGTCCTGCTAGGCTGGTTGTCCTATGCCTTGGGAGCAAACCACTA
CCGACGCCAGATTATAAATACCCTTCTCCTTACGATATGGGGTGTCCGGC
TAGGGTCCTATCTATTGCTGCGAGTAGTTCGGCGTGGGCACGATGCCCGG
TTTGATGAAATGAGGGCCAGCTTCGCACGATTTGGTTCCTTCTTTGTTTT
TCAAGCGTTTTGGGTCTTCCTGGTGACGTTGCCTATCCTTTTTTGTAATG
CCACGCGGCATGATGTACATATAGGGGCGCAAGACTATGTGGGGTGGATA
TTGTGGAGTGTCGGATTTCTCGTTGAAATTTGGGCTGATCAAAGCAAAGA
CGCTTTCAACGAACAACGTCGTTCTTCTACCTCGGCTTCATGTTCCCGCG
GCATCATAACCACAGGATGTTGGTCCTGGTCACGGCATCCGAATTATTGG
GGTGAAATCACTCTATGGCTGGGGCTCTTCCTATCCTGCTCCTCCTCCTT
CGACGACCCCAACAACCTGCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCC
CCGTTTTCACTTTTGTCATTCTCATGTTCTTGTCTGGATGTCCTTTGGCC
GAGCGAAAGTACAACGAGCGGCATGGTTCCGAAGCGTGGTACTTGGCATA
TCGCGCGCAGACCTCCCCCCTCATCCCTCTCCCTCCCTACCTCTATCGCT
CCCTTCCTACTTGGGTGAAGAGTTATTTGCTGTTTGACCTAGAAATGTAC
AAGAATGGGTTGCCTCCCTCGACTATAGTACCTACTGGGAAGGGGAAAAG
CGAGGGAGAGGTTTTGAGAGGGAGTCCGAACAAAACGACGAACCTGATAG
GGGGGGCAAAGGGCCGTCCTGGAGTGTAGATATGGCGGCGCCTGCAAGGT
GAATGCACACTGCAGGTACAGCAACTCTTGTGGGGAAAAATCAATGTACA
TAAATATTTTATTTTTTTCATAAATATACTCATTAATACGTGTATAAATA
TGATCACAAATGACAATCAAATCGACTTT back to topCoding sequence (CDS) from alignment at chr4:1013151..1014529- >NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr4:1013151..1014529- (Nannochloropsis oceanica) ATGGCAGTCGCATGGACATGGTCCAATATCCTGTGGCTGTCCGCCCTAGT GACGGCCACCCTCCAGTTCCTGACTTTCCTCGTCGCTTACTTGCTGCAAT TTGACAAGTTGACGGACATCTCGGGCGCCTCGAACTTCGTCCTGCTAGGC TGGTTGTCCTATGCCTTGGGAGCAAACCACTACCGACGCCAGATTATAAA TACCCTTCTCCTTACGATATGGGGTGTCCGGCTAGGGTCCTATCTATTGC TGCGAGTAGTTCGGCGTGGGCACGATGCCCGGTTTGATGAAATGAGGGCC AGCTTCGCACGATTTGGTTCCTTCTTTGTTTTTCAAGCGTTTTGGGTCTT CCTGGTGACGTTGCCTATCCTTTTTTGTAATGCCACGCGGCATGATGTAC ATATAGGGGCGCAAGACTATGTGGGGTGGATATTGTGGAGTGTCGGATTT CTCGTTGAAATTTGGGCTGATCAAAGCAAAGACGCTTTCAACGAACAACG TCGTTCTTCTACCTCGGCTTCATGTTCCCGCGGCATCATAACCACAGGAT GTTGGTCCTGGTCACGGCATCCGAATTATTGGGGTGAAATCACTCTATGG CTGGGGCTCTTCCTATCCTGCTCCTCCTCCTTCGACGACCCCAACAACCT GCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCCCCGTTTTCACTTTTGTCA TTCTCATGTTCTTGTCTGGATGTCCTTTGGCCGAGCGAAAGTACAACGAG CGGCATGGTTCCGAAGCGTGGTACTTGGCATATCGCGCGCAGACCTCCCC CCTCATCCCTCTCCCTCCCTACCTCTATCGCTCCCTTCCTACTTGGGTGA AGAGTTATTTGCTGTTTGACCTAGAAATGTACAAGAATGGGTTGCCTCCC TCGACTATAGTACCTACTGGGAAGGGGAAAAGCGAGGGAGAGGTTTTGAG AGGGAGTCCGAACAAAACGACGAACCTGATAGGGGGGGCAAAGGGCCGTC CTGGAGTGTAG back to top
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