NO04G03750.1, NO04G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03750.1
Unique NameNO04G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1379
Alignment locationchr4:1013151..1014529 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1013151..1014529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03750.1 vs.
Match: EWM28688.1 (uncharacterized protein Naga_100002g105 [Nannochloropsis gaditana])

HSP 1 Score: 484.6 bits (1246), Expect = 2.500e-133
Identity = 237/343 (69.10%), Postives = 273/343 (79.59%), Query Frame = 0
Query:    1 MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLGWLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDARFDEMRASFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGFLVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLWLGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNERHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPPSTIVPTGKGKSEG---------------EVLRGSPNKTTNLIG 329
            MAV W W ++LWLSALVTA LQ LTFLVAYL QFDKLTDISGASNFVLLGWLSY LG + Y RQ  NT+LLT+WG RLGSYLLLRVVRRGHDARFDEMRASF RFGSFFVFQAFWVFLVT+PIL  N+   DV +G +DY GW L+++GFLVE+WADQSKDAF+EQRR++  AS +RGIITTG W+WSRHPNYWGEITLWLGLFL+ S +FD PNNLPGA+ A ++SP+FTF+IL+FLSGCPLAE +YNERHGSE WYLAYR QTSPL+PLPP +YR LP W+K Y L +L M++ GL      P G G  +G                V +GSPNKTT+LIG
Sbjct:    1 MAV-WAWPDVLWLSALVTAALQLLTFLVAYLFQFDKLTDISGASNFVLLGWLSYGLGGHSYSRQTTNTVLLTVWGARLGSYLLLRVVRRGHDARFDEMRASFVRFGSFFVFQAFWVFLVTMPILLSNSAPQDVDLGGRDYAGWTLFTLGFLVEVWADQSKDAFHEQRRTAPLAS-ARGIITTGPWAWSRHPNYWGEITLWLGLFLTSSRAFDAPNNLPGAYAAAVISPIFTFLILVFLSGCPLAEERYNERHGSEPWYLAYRTQTSPLLPLPPLIYRPLPLWLKRYALLELAMFEKGL------PAGAGGGDGGLGGRGGDNRAGGPVHVYQGSPNKTTDLIG 335          
The following BLAST results are available for this feature:
BLAST of NO04G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28688.12.500e-13369.10uncharacterized protein Naga_100002g105 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03750NO04G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03750.1NO04G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03750.1.cds1NO04G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp
CCACAGGCCCTTCGTCGTTGCAAAATCAGAGCTCGGAATTCCCGGTCTAA
TTCACAGCCTAACCCTGCGTTTCCCAGGAGATAAAAACTCGACATAAGTA
CCGCAACCACAAGTACCCCTGCATCCCCACCTCGACGGAAGCATCATCAT
CGCTAGCCTCCCGTGCGCAGACCAGTCACGCCCCGAGTGTCCCTGCATCC
GCCCAGCTCAACGCAACCATGGCAGTCGCATGGACATGGTCCAATATCCT
GTGGCTGTCCGCCCTAGTGACGGCCACCCTCCAGTTCCTGACTTTCCTCG
TCGCTTACTTGCTGCAATTTGACAAGTTGACGGACATCTCGGGCGCCTCG
AACTTCGTCCTGCTAGGCTGGTTGTCCTATGCCTTGGGAGCAAACCACTA
CCGACGCCAGATTATAAATACCCTTCTCCTTACGATATGGGGTGTCCGGC
TAGGGTCCTATCTATTGCTGCGAGTAGTTCGGCGTGGGCACGATGCCCGG
TTTGATGAAATGAGGGCCAGCTTCGCACGATTTGGTTCCTTCTTTGTTTT
TCAAGCGTTTTGGGTCTTCCTGGTGACGTTGCCTATCCTTTTTTGTAATG
CCACGCGGCATGATGTACATATAGGGGCGCAAGACTATGTGGGGTGGATA
TTGTGGAGTGTCGGATTTCTCGTTGAAATTTGGGCTGATCAAAGCAAAGA
CGCTTTCAACGAACAACGTCGTTCTTCTACCTCGGCTTCATGTTCCCGCG
GCATCATAACCACAGGATGTTGGTCCTGGTCACGGCATCCGAATTATTGG
GGTGAAATCACTCTATGGCTGGGGCTCTTCCTATCCTGCTCCTCCTCCTT
CGACGACCCCAACAACCTGCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCC
CCGTTTTCACTTTTGTCATTCTCATGTTCTTGTCTGGATGTCCTTTGGCC
GAGCGAAAGTACAACGAGCGGCATGGTTCCGAAGCGTGGTACTTGGCATA
TCGCGCGCAGACCTCCCCCCTCATCCCTCTCCCTCCCTACCTCTATCGCT
CCCTTCCTACTTGGGTGAAGAGTTATTTGCTGTTTGACCTAGAAATGTAC
AAGAATGGGTTGCCTCCCTCGACTATAGTACCTACTGGGAAGGGGAAAAG
CGAGGGAGAGGTTTTGAGAGGGAGTCCGAACAAAACGACGAACCTGATAG
GGGGGGCAAAGGGCCGTCCTGGAGTGTAGATATGGCGGCGCCTGCAAGGT
GAATGCACACTGCAGGTACAGCAACTCTTGTGGGGAAAAATCAATGTACA
TAAATATTTTATTTTTTTCATAAATATACTCATTAATACGTGTATAAATA
TGATCACAAATGACAATCAAATCGACTTT
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protein sequence of NO04G03750.1

>NO04G03750.1-protein ID=NO04G03750.1-protein|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MAVAWTWSNILWLSALVTATLQFLTFLVAYLLQFDKLTDISGASNFVLLG
WLSYALGANHYRRQIINTLLLTIWGVRLGSYLLLRVVRRGHDARFDEMRA
SFARFGSFFVFQAFWVFLVTLPILFCNATRHDVHIGAQDYVGWILWSVGF
LVEIWADQSKDAFNEQRRSSTSASCSRGIITTGCWSWSRHPNYWGEITLW
LGLFLSCSSSFDDPNNLPGAFLAGLLSPVFTFVILMFLSGCPLAERKYNE
RHGSEAWYLAYRAQTSPLIPLPPYLYRSLPTWVKSYLLFDLEMYKNGLPP
STIVPTGKGKSEGEVLRGSPNKTTNLIGGAKGRPGV*
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mRNA from alignment at chr4:1013151..1014529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at chr4:1013151..1014529- (Nannochloropsis oceanica)
CCACAGGCCCTTCGTCGTTGCAAAATCAGAGCTCGGAATTCCCGGTCTAA TTCACAGCCTAACCCTGCGTTTCCCAGGAGATAAAAACTCGACATAAGTA CCGCAACCACAAGTACCCCTGCATCCCCACCTCGACGGAAGCATCATCAT CGCTAGCCTCCCGTGCGCAGACCAGTCACGCCCCGAGTGTCCCTGCATCC GCCCAGCTCAACGCAACCATGGCAGTCGCATGGACATGGTCCAATATCCT GTGGCTGTCCGCCCTAGTGACGGCCACCCTCCAGTTCCTGACTTTCCTCG TCGCTTACTTGCTGCAATTTGACAAGTTGACGGACATCTCGGGCGCCTCG AACTTCGTCCTGCTAGGCTGGTTGTCCTATGCCTTGGGAGCAAACCACTA CCGACGCCAGATTATAAATACCCTTCTCCTTACGATATGGGGTGTCCGGC TAGGGTCCTATCTATTGCTGCGAGTAGTTCGGCGTGGGCACGATGCCCGG TTTGATGAAATGAGGGCCAGCTTCGCACGATTTGGTTCCTTCTTTGTTTT TCAAGCGTTTTGGGTCTTCCTGGTGACGTTGCCTATCCTTTTTTGTAATG CCACGCGGCATGATGTACATATAGGGGCGCAAGACTATGTGGGGTGGATA TTGTGGAGTGTCGGATTTCTCGTTGAAATTTGGGCTGATCAAAGCAAAGA CGCTTTCAACGAACAACGTCGTTCTTCTACCTCGGCTTCATGTTCCCGCG GCATCATAACCACAGGATGTTGGTCCTGGTCACGGCATCCGAATTATTGG GGTGAAATCACTCTATGGCTGGGGCTCTTCCTATCCTGCTCCTCCTCCTT CGACGACCCCAACAACCTGCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCC CCGTTTTCACTTTTGTCATTCTCATGTTCTTGTCTGGATGTCCTTTGGCC GAGCGAAAGTACAACGAGCGGCATGGTTCCGAAGCGTGGTACTTGGCATA TCGCGCGCAGACCTCCCCCCTCATCCCTCTCCCTCCCTACCTCTATCGCT CCCTTCCTACTTGGGTGAAGAGTTATTTGCTGTTTGACCTAGAAATGTAC AAGAATGGGTTGCCTCCCTCGACTATAGTACCTACTGGGAAGGGGAAAAG CGAGGGAGAGGTTTTGAGAGGGAGTCCGAACAAAACGACGAACCTGATAG GGGGGGCAAAGGGCCGTCCTGGAGTGTAGATATGGCGGCGCCTGCAAGGT GAATGCACACTGCAGGTACAGCAACTCTTGTGGGGAAAAATCAATGTACA TAAATATTTTATTTTTTTCATAAATATACTCATTAATACGTGTATAAATA TGATCACAAATGACAATCAAATCGACTTT
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Coding sequence (CDS) from alignment at chr4:1013151..1014529-

>NO04G03750.1 ID=NO04G03750.1|Name=NO04G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr4:1013151..1014529- (Nannochloropsis oceanica)
ATGGCAGTCGCATGGACATGGTCCAATATCCTGTGGCTGTCCGCCCTAGT
GACGGCCACCCTCCAGTTCCTGACTTTCCTCGTCGCTTACTTGCTGCAAT
TTGACAAGTTGACGGACATCTCGGGCGCCTCGAACTTCGTCCTGCTAGGC
TGGTTGTCCTATGCCTTGGGAGCAAACCACTACCGACGCCAGATTATAAA
TACCCTTCTCCTTACGATATGGGGTGTCCGGCTAGGGTCCTATCTATTGC
TGCGAGTAGTTCGGCGTGGGCACGATGCCCGGTTTGATGAAATGAGGGCC
AGCTTCGCACGATTTGGTTCCTTCTTTGTTTTTCAAGCGTTTTGGGTCTT
CCTGGTGACGTTGCCTATCCTTTTTTGTAATGCCACGCGGCATGATGTAC
ATATAGGGGCGCAAGACTATGTGGGGTGGATATTGTGGAGTGTCGGATTT
CTCGTTGAAATTTGGGCTGATCAAAGCAAAGACGCTTTCAACGAACAACG
TCGTTCTTCTACCTCGGCTTCATGTTCCCGCGGCATCATAACCACAGGAT
GTTGGTCCTGGTCACGGCATCCGAATTATTGGGGTGAAATCACTCTATGG
CTGGGGCTCTTCCTATCCTGCTCCTCCTCCTTCGACGACCCCAACAACCT
GCCAGGCGCCTTTCTTGCAGGCCTTCTCAGCCCCGTTTTCACTTTTGTCA
TTCTCATGTTCTTGTCTGGATGTCCTTTGGCCGAGCGAAAGTACAACGAG
CGGCATGGTTCCGAAGCGTGGTACTTGGCATATCGCGCGCAGACCTCCCC
CCTCATCCCTCTCCCTCCCTACCTCTATCGCTCCCTTCCTACTTGGGTGA
AGAGTTATTTGCTGTTTGACCTAGAAATGTACAAGAATGGGTTGCCTCCC
TCGACTATAGTACCTACTGGGAAGGGGAAAAGCGAGGGAGAGGTTTTGAG
AGGGAGTCCGAACAAAACGACGAACCTGATAGGGGGGGCAAAGGGCCGTC
CTGGAGTGTAG
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Synonyms
Publications