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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1004306..1007250 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03710.1 vs.
Match: EWM28768.1 (zinc iron permease [Nannochloropsis gaditana]) HSP 1 Score: 451.8 bits (1161), Expect = 2.500e-123 Identity = 277/474 (58.44%), Postives = 327/474 (68.99%), Query Frame = 0
Query: 1 MPWTLFVYTLAIWLVGLGGVLAPLCMASYNKVVLTLCNSLAAGVMLSAGFVHLLHDAVSSLAGLQTKMNGYPVSEFVCALSFICVFYIETLVSPPVKPGEHHHLDHIQVDKGTECFPSQWEWQAGQSPNRTTWTRPKQTEQQQREKQQQDSSPLLPLYGAVLPPSTATGGLSGPNCCSHSSS--CSKQMKETTSSPQMR-AGPATRLLEDTGNQAGAGGGGAAVQGHTGLLAHMQLTHSHQVDLEGSLTARGDHQDQEVCTRAASSTKAGHPSSSSAAQMHSQTHSYGHGHGHSHEQGHNHSHTHGDGDMLGLSLHGHKDLHTFAGALCLLAALGFHSVIEGLGLATATTQN----DATQVGVFIAILAHKGLAGLTLGTTMLLAEASQTEFLGTALLFSVATPLGVGLGALISSYCKSAEALGLMAAIAAGTFIHVAAIEIIPSAFRDTSATHLAKLASLTVGFLAMSALFLV 468
M W L +YTLAIWLVGLGGVLAP+ MASYNK+VL +CNS AAGVMLSAGFVHLLHDAVSSL+GLQ K+ G+P+SEFVCALSFI VFYIETL +PPVK GEHHHLDHIQVDKGTECFPSQWEWQAG SP+ ++ + R+ ++QD P L YGAV+P + + P C ++ M E S AG +D+ +QAG TGLLAH++ T Q + S ++ G + + + + S S + H + H H HS + H+ SH+H + HGH+DLHT AGALCLLAALGFHSV+EGLGLATAT+Q+ TQVGVF+AILAHKGLAGLTLG+TMLLAE SQTEFL TA+LFS ATP GV LG LISSYC +A +GLM A+AAGTFIHVAAIEIIPSAFRD+SAT L KL SLTVGFLAMSALFLV
Sbjct: 1 MSWVLLIYTLAIWLVGLGGVLAPIVMASYNKMVLAVCNSFAAGVMLSAGFVHLLHDAVSSLSGLQEKLYGFPISEFVCALSFIMVFYIETLFAPPVKSGEHHHLDHIQVDKGTECFPSQWEWQAGDSPSGLF---RSISQTKIRKSERQDLLPPLHQYGAVMPRLAPSSSETEPACEKDTAGVIVENHMNENESKNATEDAGRQLPGKKDSCSQAGKAAHQENDGMRTGLLAHLRQT---QAPILPSQSSEGHDEGKAQSLESTHGRVSPGSKSPSTRRSHPGMSAPSHCHSHSRKHSHSLSHSH-----IHDEAHGHEDLHTVAGALCLLAALGFHSVMEGLGLATATSQSIVDGGGTQVGVFLAILAHKGLAGLTLGSTMLLAEVSQTEFLLTAVLFSAATPAGVALGVLISSYCHTAATVGLMGAVAAGTFIHVAAIEIIPSAFRDSSATQLTKLMSLTVGFLAMSALFLV 463
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03710.1 ID=NO04G03710.1|Name=NO04G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp
ACAGTCTCTGCACAGGACCCGTGGGTGTGGCCCGATTGGACGCGGTACAC
GTTGGAAACTGCATCCTCCTGCCGCGGCACACGTCGGAAAACTGTCTGAG
CCGGGCTCGCTGCCCCAGAACCTCTTCTAACTCAAGTACAAGATCGAACC
ATGCCCTGGACATTATTTGTGTACACCCTAGCCATCTGGCTAGTAGGACT
GGGGGGAGTGCTTGCCCCCTTATGTATGGCCTCCTATAACAAAGTGGTCC
TCACACTTTGCAACAGCCTTGCGGCGGGTGTCATGCTCTCGGCCGGGTTC
GTTCATTTACTCCACGACGCCGTCTCCTCCCTCGCGGGCCTGCAAACGAA
AATGAACGGCTACCCCGTCAGTGAATTTGTCTGTGCCTTGTCGTTTATTT
GCGTTTTCTATATCGAGACGTTGGTTTCCCCGCCGGTCAAACCGGGGGAA
CACCATCATCTTGATCATATTCAGGTGGACAAGGGAACGGAGTGCTTCCC
TTCTCAATGGGAATGGCAGGCAGGCCAGTCACCCAATAGAACCACGTGGA
CTCGCCCCAAGCAGACAGAACAGCAGCAGCGGGAGAAGCAGCAGCAAGAC
TCATCACCATTATTACCACTATATGGTGCTGTGTTGCCGCCATCAACGGC
AACAGGGGGCTTGTCAGGACCTAACTGCTGCAGCCACAGTAGTAGTTGCA
GCAAACAAATGAAAGAGACAACATCTTCGCCACAAATGCGAGCAGGCCCC
GCAACCAGACTGTTGGAAGACACGGGCAATCAGGCGGGAGCCGGAGGAGG
AGGAGCAGCAGTACAAGGACACACAGGTCTGCTGGCACACATGCAGCTGA
CCCATTCCCATCAGGTTGACCTCGAAGGGTCTTTAACCGCGCGTGGCGAC
CATCAGGATCAGGAAGTGTGTACAAGAGCCGCAAGCAGTACCAAAGCGGG
CCATCCCTCGTCCTCCTCTGCAGCGCAAATGCACTCTCAAACTCATTCTT
ACGGCCACGGCCACGGGCACAGCCATGAGCAAGGACACAATCATAGTCAT
ACCCACGGAGATGGTGATATGCTTGGCCTTTCTCTACATGGGCACAAGGA
CCTGCACACTTTCGCAGGTGCCTTATGCCTGCTTGCTGCCTTGGGCTTTC
ATTCTGTCATCGAGGGACTTGGGCTTGCCACGGCCACGACGCAAAATGAT
GCGACGCAAGTAGGGGTCTTCATCGCGATTCTGGCGCACAAAGGATTAGC
AGGCCTTACCCTCGGCACCACCATGCTCCTCGCCGAAGCGAGCCAGACGG
AATTCCTGGGCACGGCCCTGCTCTTCTCAGTAGCTACCCCTTTAGGGGTG
GGTTTAGGAGCGTTGATTTCCTCCTACTGTAAGTCAGCAGAGGCTTTGGG
TCTCATGGCTGCTATCGCGGCAGGGACATTCATTCACGTGGCGGCGATTG
AAATCATCCCGTCGGCGTTCCGGGACACCAGCGCCACGCATCTTGCGAAA
TTGGCGTCCTTGACGGTGGGTTTTTTGGCAATGTCGGCCTTGTTTCTGGT
AGAGTAAGTACCGGTGATTAGAAAGGAGACGGAGCAAAAAATTAGCCTGT
CCTTCCATTCTCGGTATTTGCATTTGGTCACGTGAATATGAGGAGACGAG
AGGGAGGAAAAAACATGTTGGAATAAAGAACGCTGAGAGACTTGTCAGTA
AGAGGTGTCCAACTGCCTGCTTTTGTCGTAGAGGGAAGCCCCTCTACCCT
CCCTTTTTAAGGACGAGATGTATTCATCTTAGTTTGAGAGAGAGTAAATA
GAATACAACGAGAGCATTGGTCAGGCGAAGCGAAAGACTCCCTTGTCCGA
CGAGGACGTTTTGAGAACACACACATCCTTTCCCTGGTCAAGAAGGAAAA
GTGCTGAATCGAGGGGAAGCAGGTCTACTTATTGTAAAGATATGAAAGCT
CCCCGATCATGGATAGACAGTGCCTGGACATAGAGGGGAACGCACGCAAG
CGAGTAAACAGACACAGAATGGGTGAGTAATTTGACAGTATTCAAACATA
TACAAAGACACGGAGTGGGAAAATGTCTTTGGTGTGCAGCGTAAGGGTAT
GTTAATGAAAATAAATTTTAAACAGCAGAACGACGACTTGAGCAGACAGG
ATGATCTTCTCCCTCAATCCTTTCCTTCTCCCTCCCTCCCTCCCTCCCAT
CTCCCTCCACTCAACCGGCCGTTAACCACTTCCGATCCCCCCCTTTTCCC
CCTTCCCTATGCGTTGTACGTAAGTCTAACAAGTGGGTCAAGATGATGTC
AGCGTCTGCCGCTCAAGTTTTTGGTCGTCTTCTGATTCTTTTAAATACTC
ATGTATACACACGTCTTGTTCCTCT back to topprotein sequence of NO04G03710.1 >NO04G03710.1-protein ID=NO04G03710.1-protein|Name=NO04G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MPWTLFVYTLAIWLVGLGGVLAPLCMASYNKVVLTLCNSLAAGVMLSAGF
VHLLHDAVSSLAGLQTKMNGYPVSEFVCALSFICVFYIETLVSPPVKPGE
HHHLDHIQVDKGTECFPSQWEWQAGQSPNRTTWTRPKQTEQQQREKQQQD
SSPLLPLYGAVLPPSTATGGLSGPNCCSHSSSCSKQMKETTSSPQMRAGP
ATRLLEDTGNQAGAGGGGAAVQGHTGLLAHMQLTHSHQVDLEGSLTARGD
HQDQEVCTRAASSTKAGHPSSSSAAQMHSQTHSYGHGHGHSHEQGHNHSH
THGDGDMLGLSLHGHKDLHTFAGALCLLAALGFHSVIEGLGLATATTQND
ATQVGVFIAILAHKGLAGLTLGTTMLLAEASQTEFLGTALLFSVATPLGV
GLGALISSYCKSAEALGLMAAIAAGTFIHVAAIEIIPSAFRDTSATHLAK
LASLTVGFLAMSALFLVE* back to topmRNA from alignment at chr4:1004306..1007250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03710.1 ID=NO04G03710.1|Name=NO04G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2945bp|location=Sequence derived from alignment at chr4:1004306..1007250- (Nannochloropsis oceanica)
ACAGTCTCTGCACAGGACCCGTGGGTGTGGCCCGATTGGACGCGGTACAC
GTTGGAAACTGCATCCTCCTGCCGCGGCACACGTCGGAAAACTGTCTGAG
CCGGGCTCGCTGCCCCAGAACCTCTTCTAACTCAAGTACAAGGTGCGTCA
AAGCTGCTGCCCTAAGGGTTGACCGTCGATGGTTAGCTTAAACAGGATGC
AGGTGGTTAAAATTTGGGAATGGCATTTTATGATGCTTAGGGGTAAATTT
TGAGGTGGCTGGTCAAGGAAGGGCTGCTCCCCTGAAGGATCGTGGCACGT
ACTTGCGCTTCCAGACTACGACGTACTTGCGCTTCTGGATTATTTCGGCC
CCATCATGTGTACCACATGAATTTGAGCTCTATATGTGACCTACAAGCAA
AGTTTAGCACCAAGGGATGCTCTTTGAGTTCTAGTTCCCACGTTCCGCCG
AACACATGGACGCTCATGTCTCACCCCTCTCCTCTCTCTCCCCGCCTAAC
ACATTCACCGCTAGATCGAACCATGCCCTGGACATTATTTGTGTACACCC
TAGCCATCTGGCTAGTAGGACTGGGGGGAGTGCTTGCCCCCTTATGTATG
GCCTCCTATAACAAAGTGGTCCTCACACTTTGCAACAGCCTTGCGGCGGG
TGTCATGCTCTCGGCCGGGTTCGTTCATTTACTCCACGACGCCGTCTCCT
CCCTCGCGGGCCTGCAAACGAAAATGAACGGCTACCCCGTCAGTGAATTT
GTCTGTGCCTTGTCGTTTATTTGCGTTTTCTATATCGAGACGTTGGTTTC
CCCGCCGGTCAAACCGGGGGAACACCATCATCTTGATCATATTCAGGTGG
ACAAGGGAACGGAGTGCTTCCCTTCTCAATGGGAATGGCAGGCAGGCCAG
TCACCCAATAGAACCACGTGGACTCGCCCCAAGCAGACAGAACAGCAGCA
GCGGGAGAAGCAGCAGCAAGACTCATCACCATTATTACCACTATATGGTG
CTGTGTTGCCGCCATCAACGGCAACAGGGGGCTTGTCAGGACCTAACTGC
TGCAGCCACAGTAGTAGTTGCAGCAAACAAATGAAAGAGACAACATCTTC
GCCACAAATGCGAGCAGGCCCCGCAACCAGACTGTTGGAAGACACGGGCA
ATCAGGCGGGAGCCGGAGGAGGAGGAGCAGCAGTACAAGGACACACAGGT
CTGCTGGCACACATGCAGCTGACCCATTCCCATCAGGTTGACCTCGAAGG
GTCTTTAACCGCGCGTGGCGACCATCAGGATCAGGAAGTGTGTACAAGAG
CCGCAAGCAGTACCAAAGCGGGCCATCCCTCGTCCTCCTCTGCAGCGCAA
ATGCACTCTCAAACTCATTCTTACGGCCACGGCCACGGGCACAGCCATGA
GCAAGGACACAATCATAGTCATACCCACGGAGATGGTGATATGCTTGGCC
TTTCTCTACATGGGCACAAGGACCTGCACACTTTCGCAGGTGCCTTATGC
CTGCTTGCTGCCTTGGGCTTTCATTCTGTCATCGAGGGACTTGGGCTTGC
CACGGCCACGACGCAAAATGATGCGACGCAAGTAGGGGTCTTCATCGCGA
TTCTGGCGCACAAAGGATTAGCAGGTGAGTGTGTAGAAAGGATTGTTCGC
CACCCCCCACATATACCCCTCTCTTTTTCTCCTCTTCTCTTCTCTCCTCT
TCTCTTCTCTCCTCTTCTCTTTCTCTCTTTGCTAAGCGGGCCTGACCCTC
CCCGAAGACTCCTTCTCATCCTTCCGCTCCCTTTCCCCTCTCTTGTTGCC
GCCTACCCCCCTATCTCTCCAGGCCTTACCCTCGGCACCACCATGCTCCT
CGCCGAAGCGAGCCAGACGGAATTCCTGGGCACGGCCCTGCTCTTCTCAG
TAGCTACCCCTTTAGGGGTGGGTTTAGGAGCGTTGATTTCCTCCTACTGT
AAGTCAGCAGAGGCTTTGGGTCTCATGGCTGCTATCGCGGCAGGGACATT
CATTCACGTGGCGGCGATTGAAATCATCCCGTCGGCGTTCCGGGACACCA
GCGCCACGCATCTTGCGAAATTGGCGTCCTTGACGGTGGGTTTTTTGGCA
ATGTCGGCCTTGTTTCTGGTAGAGTAAGTACCGGTGATTAGAAAGGAGAC
GGAGCAAAAAATTAGCCTGTCCTTCCATTCTCGGTATTTGCATTTGGTCA
CGTGAATATGAGGAGACGAGAGGGAGGAAAAAACATGTTGGAATAAAGAA
CGCTGAGAGACTTGTCAGTAAGAGGTGTCCAACTGCCTGCTTTTGTCGTA
GAGGGAAGCCCCTCTACCCTCCCTTTTTAAGGACGAGATGTATTCATCTT
AGTTTGAGAGAGAGTAAATAGAATACAACGAGAGCATTGGTCAGGCGAAG
CGAAAGACTCCCTTGTCCGACGAGGACGTTTTGAGAACACACACATCCTT
TCCCTGGTCAAGAAGGAAAAGTGCTGAATCGAGGGGAAGCAGGTCTACTT
ATTGTAAAGATATGAAAGCTCCCCGATCATGGATAGACAGTGCCTGGACA
TAGAGGGGAACGCACGCAAGCGAGTAAACAGACACAGAATGGGTGAGTAA
TTTGACAGTATTCAAACATATACAAAGACACGGAGTGGGAAAATGTCTTT
GGTGTGCAGCGTAAGGGTATGTTAATGAAAATAAATTTTAAACAGCAGAA
CGACGACTTGAGCAGACAGGATGATCTTCTCCCTCAATCCTTTCCTTCTC
CCTCCCTCCCTCCCTCCCATCTCCCTCCACTCAACCGGCCGTTAACCACT
TCCGATCCCCCCCTTTTCCCCCTTCCCTATGCGTTGTACGTAAGTCTAAC
AAGTGGGTCAAGATGATGTCAGCGTCTGCCGCTCAAGTTTTTGGTCGTCT
TCTGATTCTTTTAAATACTCATGTATACACACGTCTTGTTCCTCT back to topCoding sequence (CDS) from alignment at chr4:1004306..1007250- >NO04G03710.1 ID=NO04G03710.1|Name=NO04G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr4:1004306..1007250- (Nannochloropsis oceanica)
ATGCCCTGGACATTATTTGTGTACACCCTAGCCATCTGGCTAGTAGGACT
GGGGGGAGTGCTTGCCCCCTTATGTATGGCCTCCTATAACAAAGTGGTCC
TCACACTTTGCAACAGCCTTGCGGCGGGTGTCATGCTCTCGGCCGGGTTC
GTTCATTTACTCCACGACGCCGTCTCCTCCCTCGCGGGCCTGCAAACGAA
AATGAACGGCTACCCCGTCAGTGAATTTGTCTGTGCCTTGTCGTTTATTT
GCGTTTTCTATATCGAGACGTTGGTTTCCCCGCCGGTCAAACCGGGGGAA
CACCATCATCTTGATCATATTCAGGTGGACAAGGGAACGGAGTGCTTCCC
TTCTCAATGGGAATGGCAGGCAGGCCAGTCACCCAATAGAACCACGTGGA
CTCGCCCCAAGCAGACAGAACAGCAGCAGCGGGAGAAGCAGCAGCAAGAC
TCATCACCATTATTACCACTATATGGTGCTGTGTTGCCGCCATCAACGGC
AACAGGGGGCTTGTCAGGACCTAACTGCTGCAGCCACAGTAGTAGTTGCA
GCAAACAAATGAAAGAGACAACATCTTCGCCACAAATGCGAGCAGGCCCC
GCAACCAGACTGTTGGAAGACACGGGCAATCAGGCGGGAGCCGGAGGAGG
AGGAGCAGCAGTACAAGGACACACAGGTCTGCTGGCACACATGCAGCTGA
CCCATTCCCATCAGGTTGACCTCGAAGGGTCTTTAACCGCGCGTGGCGAC
CATCAGGATCAGGAAGTGTGTACAAGAGCCGCAAGCAGTACCAAAGCGGG
CCATCCCTCGTCCTCCTCTGCAGCGCAAATGCACTCTCAAACTCATTCTT
ACGGCCACGGCCACGGGCACAGCCATGAGCAAGGACACAATCATAGTCAT
ACCCACGGAGATGGTGATATGCTTGGCCTTTCTCTACATGGGCACAAGGA
CCTGCACACTTTCGCAGGTGCCTTATGCCTGCTTGCTGCCTTGGGCTTTC
ATTCTGTCATCGAGGGACTTGGGCTTGCCACGGCCACGACGCAAAATGAT
GCGACGCAAGTAGGGGTCTTCATCGCGATTCTGGCGCACAAAGGATTAGC
AGGCCTTACCCTCGGCACCACCATGCTCCTCGCCGAAGCGAGCCAGACGG
AATTCCTGGGCACGGCCCTGCTCTTCTCAGTAGCTACCCCTTTAGGGGTG
GGTTTAGGAGCGTTGATTTCCTCCTACTGTAAGTCAGCAGAGGCTTTGGG
TCTCATGGCTGCTATCGCGGCAGGGACATTCATTCACGTGGCGGCGATTG
AAATCATCCCGTCGGCGTTCCGGGACACCAGCGCCACGCATCTTGCGAAA
TTGGCGTCCTTGACGGTGGGTTTTTTGGCAATGTCGGCCTTGTTTCTGGT
AGAGTAA back to top
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