NO04G03660.1, NO04G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03660.1
Unique NameNO04G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr4:991502..992896 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:991502..992896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03660.1 vs.
Match: EWM28792.1 (molybdenum cofactor synthesis 1 [Nannochloropsis gaditana])

HSP 1 Score: 585.1 bits (1507), Expect = 1.900e-163
Identity = 301/453 (66.45%), Postives = 352/453 (77.70%), Query Frame = 0 
Query:   22 RRCGCQ--RSNLSSVRVADIPAPE-SPTSAAAAEPQSIPPKSKPFSTASSP-RLQELRARIRNEGSSLQMFFQPSPPLQP------PTPLHLSSQPAVLLDEDEDEGPASTLGPLASVERAPLTDSFGRQHTYLRISLTERCNLRCTYCMPEEGVQLQAQDRLLSTDEVLRIAEIFVRMGVTKIRLTGGEPLVRKDIVSLTRSLKALGLRELAVTTNGVAPASKYADLVAAGMTHFNISLDTLQPARFASISRRPAKYLEAVQVNLAQLLGPLGVGGRVKLNNVVMRGVNDDELADFVALTAEQKLDVRFIEWMPFDSNGWNKTTFVPYTEMTTRLKEAFPSVARAVDAPHDTTKWWRVPGYKGRVGFITSMSQHFCGSCNRLRITADGKLKVCLFGAEDLSLRDALREGRTEEEMLRMVGRAVGLKKFSLGGQEDMFALAKSKNRPMILIGG 465
            + CGCQ  R+  +S R+A  PA   +P+ A+ A+P + P      S A  P RLQELR RIR +G     F Q +    P      P+ L +   PA+   EDE E   S LGPL + ER PL DSFGR+HTYLRISLTERCNLRCTYCMP EGV LQ +  LL+TDE+LR+ E+F  +GVTK+RLTGGEP+VRKDI  LTRSL+ALG++ELA+TTNGVAP ++Y +LVAAGMTHFN+SLDTLQ  RFA+ISRRP ++LE V  N+A L G  G GGRVKLNNVVMRG NDDE+ DFV LTA Q+LDVRFIEWMPFDSNGWN  TF+PY EMT RL+E+FP+V RAVD PHDTTKWW+VPG++GRVGFITSMSQHFCG+CNRLRITADGKLKVCLFGAEDLSLRDALR G T +EM  M+G+AVGLKKFSLGG+ DMFALA SKNRPM+LIGG
Sbjct:   35 KSCGCQHARAASTSTRMAVAPAASGNPSQASRAQPSARPSPPTGNSLAVKPSRLQELRTRIREDGDLFSKFAQQTSASLPATAAALPSSLDIPGSPAL---EDEKEVRLSALGPLTASEREPLVDSFGREHTYLRISLTERCNLRCTYCMPAEGVTLQPKGHLLTTDEILRLVEVFAGLGVTKVRLTGGEPMVRKDIALLTRSLRALGIQELAITTNGVAPRNRYEELVAAGMTHFNVSLDTLQFDRFAAISRRPGRFLETVLGNVALLAGAAGGGGRVKLNNVVMRGANDDEIPDFVGLTAGQRLDVRFIEWMPFDSNGWNSGTFLPYAEMTARLQESFPTVVRAVDGPHDTTKWWQVPGHRGRVGFITSMSQHFCGTCNRLRITADGKLKVCLFGAEDLSLRDALRAGGTNKEMAGMIGKAVGLKKFSLGGRADMFALAGSKNRPMVLIGG 484
The following BLAST results are available for this feature:
BLAST of NO04G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28792.11.900e-16366.45molybdenum cofactor synthesis 1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03660NO04G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03660.1NO04G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03660.1.cds1NO04G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03660.1 ID=NO04G03660.1|Name=NO04G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
ATGCCCTTGCTGACGTCGGCGGCCACCGCCACCACCAGAGCAATAGTACG
ACGCGCAGGAAGACGGAGATGTGGTTGTCAACGATCCAACTTGTCCAGCG
TGCGCGTGGCCGATATCCCCGCACCCGAGTCACCAACATCAGCAGCAGCA
GCAGAGCCTCAATCCATCCCCCCCAAATCCAAGCCCTTCTCCACCGCGTC
ATCTCCACGCCTCCAAGAGCTCCGCGCAAGAATACGAAATGAGGGATCTT
CGCTTCAAATGTTTTTCCAGCCGTCACCGCCTCTACAACCACCAACACCT
CTCCACCTCTCGTCGCAGCCGGCCGTCCTGCTTGACGAGGACGAAGACGA
AGGTCCCGCGTCCACCCTCGGCCCGCTCGCCTCCGTTGAACGAGCCCCAT
TGACCGATTCTTTTGGAAGACAGCATACCTACCTCCGCATCTCCCTCACC
GAGCGCTGCAATCTCCGCTGCACGTACTGCATGCCTGAGGAAGGCGTCCA
ACTCCAAGCCCAAGACCGCCTCCTGAGCACCGACGAAGTCCTGCGAATTG
CCGAGATATTCGTGCGTATGGGAGTAACCAAGATCAGACTTACAGGAGGC
GAGCCATTAGTTCGCAAGGATATCGTTTCTCTTACCCGATCTCTGAAAGC
TTTAGGCCTGAGGGAGCTAGCTGTCACCACCAATGGCGTGGCCCCGGCAA
GCAAATATGCGGATCTCGTCGCGGCGGGCATGACGCATTTCAACATAAGC
CTCGATACCTTACAACCAGCTCGATTTGCATCGATCAGCCGAAGACCAGC
CAAGTACCTAGAGGCCGTCCAAGTCAATCTGGCACAGCTCTTGGGTCCTT
TGGGTGTGGGAGGGAGGGTCAAGTTGAATAATGTTGTGATGCGCGGGGTG
AACGACGACGAGCTTGCAGATTTTGTTGCCTTGACGGCCGAGCAAAAATT
GGACGTGCGATTCATTGAATGGATGCCATTTGATAGCAATGGGTGGAATA
AAACGACCTTCGTGCCATACACGGAAATGACCACGAGGCTGAAAGAGGCT
TTTCCGTCTGTTGCTCGGGCAGTGGACGCGCCGCATGACACGACGAAGTG
GTGGCGAGTCCCGGGATACAAGGGAAGGGTGGGATTTATAACGTCGATGA
GTCAGCACTTCTGCGGCTCGTGTAACCGGCTGCGAATCACGGCGGATGGC
AAGCTGAAGGTGTGTTTGTTTGGCGCGGAGGACTTGAGTTTGAGGGATGC
GTTGAGAGAGGGGCGGACGGAGGAAGAGATGTTAAGAATGGTGGGACGGG
CGGTGGGATTAAAGAAATTTTCATTGGGAGGACAGGAAGACATGTTTGCC
TTGGCCAAGTCAAAGAATCGGCCGATGATATTGATCGGCGGGTAG
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protein sequence of NO04G03660.1

>NO04G03660.1-protein ID=NO04G03660.1-protein|Name=NO04G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MPLLTSAATATTRAIVRRAGRRRCGCQRSNLSSVRVADIPAPESPTSAAA
AEPQSIPPKSKPFSTASSPRLQELRARIRNEGSSLQMFFQPSPPLQPPTP
LHLSSQPAVLLDEDEDEGPASTLGPLASVERAPLTDSFGRQHTYLRISLT
ERCNLRCTYCMPEEGVQLQAQDRLLSTDEVLRIAEIFVRMGVTKIRLTGG
EPLVRKDIVSLTRSLKALGLRELAVTTNGVAPASKYADLVAAGMTHFNIS
LDTLQPARFASISRRPAKYLEAVQVNLAQLLGPLGVGGRVKLNNVVMRGV
NDDELADFVALTAEQKLDVRFIEWMPFDSNGWNKTTFVPYTEMTTRLKEA
FPSVARAVDAPHDTTKWWRVPGYKGRVGFITSMSQHFCGSCNRLRITADG
KLKVCLFGAEDLSLRDALREGRTEEEMLRMVGRAVGLKKFSLGGQEDMFA
LAKSKNRPMILIGG*
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mRNA from alignment at chr4:991502..992896+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03660.1 ID=NO04G03660.1|Name=NO04G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at chr4:991502..992896+ (Nannochloropsis oceanica)
ATGCCCTTGCTGACGTCGGCGGCCACCGCCACCACCAGAGCAATAGTACG
ACGCGCAGGAAGACGGAGATGTGGTTGTCAACGATCCAACTTGTCCAGCG
TGCGCGTGGCCGATATCCCCGCACCCGAGTCACCAACATCAGCAGCAGCA
GCAGAGCCTCAATCCATCCCCCCCAAATCCAAGCCCTTCTCCACCGCGTC
ATCTCCACGCCTCCAAGAGCTCCGCGCAAGAATACGAAATGAGGGATCTT
CGCTTCAAATGTTTTTCCAGCCGTCACCGCCTCTACAACCACCAACACCT
CTCCACCTCTCGTCGCAGCCGGCCGTCCTGCTTGACGAGGACGAAGACGA
AGGTCCCGCGTCCACCCTCGGCCCGCTCGCCTCCGTTGAACGAGCCCCAT
TGACCGATTCTTTTGGAAGACAGCATACCTACCTCCGCATCTCCCTCACC
GAGCGCTGCAATCTCCGCTGCACGTACTGCATGCCTGAGGAAGGCGTCCA
ACTCCAAGCCCAAGACCGCCTCCTGAGCACCGACGAAGTCCTGCGAATTG
CCGAGATATTCGTGCGTATGGGAGTAACCAAGATCAGACTTACAGGAGGC
GAGCCATTAGTTCGCAAGGATATCGTTTCTCTTACCCGATCTCTGAAAGC
TTTAGGCCTGAGGGAGCTAGCTGTCACCACCAATGGCGTGGCCCCGGCAA
GCAAATATGCGGATCTCGTCGCGGCGGGCATGACGCATTTCAACATAAGC
CTCGATACCTTACAACCAGCTCGATTTGCATCGATCAGCCGAAGACCAGC
CAAGTACCTAGAGGCCGTCCAAGTCAATCTGGCACAGCTCTTGGGTCCTT
TGGGTGTGGGAGGGAGGGTCAAGTTGAATAATGTTGTGATGCGCGGGGTG
AACGACGACGAGCTTGCAGATTTTGTTGCCTTGACGGCCGAGCAAAAATT
GGACGTGCGATTCATTGAATGGATGCCATTTGATAGCAATGGGTGGAATA
AAACGACCTTCGTGCCATACACGGAAATGACCACGAGGCTGAAAGAGGCT
TTTCCGTCTGTTGCTCGGGCAGTGGACGCGCCGCATGACACGACGAAGTG
GTGGCGAGTCCCGGGATACAAGGGAAGGGTGGGATTTATAACGTCGATGA
GTCAGCACTTCTGCGGCTCGTGTAACCGGCTGCGAATCACGGCGGATGGC
AAGCTGAAGGTGTGTTTGTTTGGCGCGGAGGACTTGAGTTTGAGGGATGC
GTTGAGAGAGGGGCGGACGGAGGAAGAGATGTTAAGAATGGTGGGACGGG
CGGTGGGATTAAAGAAATTTTCATTGGGAGGACAGGAAGACATGTTTGCC
TTGGCCAAGTCAAAGAATCGGCCGATGATATTGATCGGCGGGTAG
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Coding sequence (CDS) from alignment at chr4:991502..992896+

>NO04G03660.1 ID=NO04G03660.1|Name=NO04G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr4:991502..992896+ (Nannochloropsis oceanica)
ATGCCCTTGCTGACGTCGGCGGCCACCGCCACCACCAGAGCAATAGTACG
ACGCGCAGGAAGACGGAGATGTGGTTGTCAACGATCCAACTTGTCCAGCG
TGCGCGTGGCCGATATCCCCGCACCCGAGTCACCAACATCAGCAGCAGCA
GCAGAGCCTCAATCCATCCCCCCCAAATCCAAGCCCTTCTCCACCGCGTC
ATCTCCACGCCTCCAAGAGCTCCGCGCAAGAATACGAAATGAGGGATCTT
CGCTTCAAATGTTTTTCCAGCCGTCACCGCCTCTACAACCACCAACACCT
CTCCACCTCTCGTCGCAGCCGGCCGTCCTGCTTGACGAGGACGAAGACGA
AGGTCCCGCGTCCACCCTCGGCCCGCTCGCCTCCGTTGAACGAGCCCCAT
TGACCGATTCTTTTGGAAGACAGCATACCTACCTCCGCATCTCCCTCACC
GAGCGCTGCAATCTCCGCTGCACGTACTGCATGCCTGAGGAAGGCGTCCA
ACTCCAAGCCCAAGACCGCCTCCTGAGCACCGACGAAGTCCTGCGAATTG
CCGAGATATTCGTGCGTATGGGAGTAACCAAGATCAGACTTACAGGAGGC
GAGCCATTAGTTCGCAAGGATATCGTTTCTCTTACCCGATCTCTGAAAGC
TTTAGGCCTGAGGGAGCTAGCTGTCACCACCAATGGCGTGGCCCCGGCAA
GCAAATATGCGGATCTCGTCGCGGCGGGCATGACGCATTTCAACATAAGC
CTCGATACCTTACAACCAGCTCGATTTGCATCGATCAGCCGAAGACCAGC
CAAGTACCTAGAGGCCGTCCAAGTCAATCTGGCACAGCTCTTGGGTCCTT
TGGGTGTGGGAGGGAGGGTCAAGTTGAATAATGTTGTGATGCGCGGGGTG
AACGACGACGAGCTTGCAGATTTTGTTGCCTTGACGGCCGAGCAAAAATT
GGACGTGCGATTCATTGAATGGATGCCATTTGATAGCAATGGGTGGAATA
AAACGACCTTCGTGCCATACACGGAAATGACCACGAGGCTGAAAGAGGCT
TTTCCGTCTGTTGCTCGGGCAGTGGACGCGCCGCATGACACGACGAAGTG
GTGGCGAGTCCCGGGATACAAGGGAAGGGTGGGATTTATAACGTCGATGA
GTCAGCACTTCTGCGGCTCGTGTAACCGGCTGCGAATCACGGCGGATGGC
AAGCTGAAGGTGTGTTTGTTTGGCGCGGAGGACTTGAGTTTGAGGGATGC
GTTGAGAGAGGGGCGGACGGAGGAAGAGATGTTAAGAATGGTGGGACGGG
CGGTGGGATTAAAGAAATTTTCATTGGGAGGACAGGAAGACATGTTTGCC
TTGGCCAAGTCAAAGAATCGGCCGATGATATTGATCGGCGGGTAG
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Synonyms
Publications