NO04G03580.1, NO04G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03580.1
Unique NameNO04G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1101
Alignment locationchr4:971539..972901 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:971539..972901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03580.1 vs.
Match: EWM28694.1 (g-protein complex alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 643.3 bits (1658), Expect = 4.500e-181
Identity = 315/355 (88.73%), Postives = 342/355 (96.34%), Query Frame = 0
Query:    1 MGNICGTISAEEIKAAKMSKEVDQANEAAFKREQEKIKLLLLGAGESGKSTIFKQMKLLYGAGTTLEDKKMMTPVIYSNTIGAMRILLDQAKQFGNDVEIVDQEAIEIVKTIPDTDIDFKVGAAIKGLWKDPAIQKTWARRSEFQIVESVRYYFNKIDVISQPDYLASDEDILYARVRTSGIVTERYMIDGTMFEMYDVGGQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDASTNRMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGISQFSDFKGGLGDFDSGVEYFVNLFLAVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGSLKDSGFM 356
            MGN+CG+ISA++I+AAK+SK+VDQAN AAFK+EQEKIKLLLLGAGESGKSTIFKQMKLLYGAGTTLEDKKMMTPV+Y+NTI AMRILL+Q KQFG D EI+DQ+AI+++ TIPDTDID K+G+AIK LWKD AIQKTWARRSEFQIVESV+YYFNKID IS+PDYLASD+DILYARVRTSGIVTERYMIDGTMFEMYDVGGQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFED+STNRMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKG+ QFSD+KG LGDFD+GV+YFVNLFL VNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRG+LKDSGFM
Sbjct:    1 MGNLCGSISADDIEAAKISKDVDQANAAAFKKEQEKIKLLLLGAGESGKSTIFKQMKLLYGAGTTLEDKKMMTPVVYANTICAMRILLEQCKQFGYDSEILDQDAIDLINTIPDTDIDLKIGSAIKTLWKDDAIQKTWARRSEFQIVESVKYYFNKIDEISEPDYLASDDDILYARVRTSGIVTERYMIDGTMFEMYDVGGQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDSSTNRMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGVPQFSDYKGCLGDFDAGVDYFVNLFLGVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGNLKDSGFM 355          
The following BLAST results are available for this feature:
BLAST of NO04G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28694.14.500e-18188.73g-protein complex alpha subunit [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03580NO04G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03580.1NO04G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03580.1.cds1NO04G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03580.1.cds2NO04G03580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03580.1 ID=NO04G03580.1|Name=NO04G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
ATGGGCAATATATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAA
GATGAGTAAGGAGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGC
AGGAGAAAATCAAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGT
ACTATCTTTAAACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGA
AGACAAGAAAATGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCA
TGCGGATCCTGCTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAGATT
GTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCCCGATACGGACAT
TGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGAAGGACCCCGCTA
TTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATAGTTGAATCTGTC
AGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCCTGACTACCTGGC
ATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCTCGGGCATCGTCA
CGGAGCGGTACATGATCGATGGGACAATGTTTGAGATGTACGACGTCGGC
GGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTTTGATAATGTCAC
GGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACCAGGTTTTGTTCG
AGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAGCTCTTTAAAGAA
ATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCTCCTCTTTCTGAA
TAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGGACATCAAGGGCA
TATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGACTTTGACTCGGGC
GTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGACCGACCTAATGA
GAAGATTATCTACAACCACGTGACTTGCGCGACGGACACAAAGAATGTGG
AAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGCGGGAGTCTCAAG
GATAGTGGGTTCATGTAAGGGGTGGAGTTTGGTGATGGAGGCCAGGGAGT
G
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protein sequence of NO04G03580.1

>NO04G03580.1-protein ID=NO04G03580.1-protein|Name=NO04G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MGNICGTISAEEIKAAKMSKEVDQANEAAFKREQEKIKLLLLGAGESGKS
TIFKQMKLLYGAGTTLEDKKMMTPVIYSNTIGAMRILLDQAKQFGNDVEI
VDQEAIEIVKTIPDTDIDFKVGAAIKGLWKDPAIQKTWARRSEFQIVESV
RYYFNKIDVISQPDYLASDEDILYARVRTSGIVTERYMIDGTMFEMYDVG
GQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDASTNRMIEAIQLFKE
ICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGISQFSDFKGGLGDFDSG
VEYFVNLFLAVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGSLK
DSGFM*
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mRNA from alignment at chr4:971539..972901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03580.1 ID=NO04G03580.1|Name=NO04G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at chr4:971539..972901- (Nannochloropsis oceanica)
ATGGGCAATATATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAA GATGAGTAAGGAGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGC AGGAGAAAATCAAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGT ACTATCTTTAAACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGA AGACAAGAAAATGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCA TGCGGATCCTGCTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAGGTG AGCAGGAAAGGGAGGGACTAGAAGGGTGGGGACGAAACCTTGTCCCCACC CTACGAAGATCTATATTATGCATGTTTGCTCCAGGTGAGTACTGTTTGCG TGTCTGGTGAAGATTCGTGAATATTTTGTGCCTGAATGGATGCGACAGAA TGTGGGCCCTTGTGGACACCCTTGTGATTTTGTGCGAATGGGGTTGTGGC TGCCGCTCAAACGCTGAAATGTTAGTCTATTTGTCACCTACGTCCATTCT CTCTTACAGATTGTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCC CGATACGGACATTGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGA AGGACCCCGCTATTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATA GTTGAATCTGTCAGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCC TGACTACCTGGCATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCT CGGGCATCGTCACGGAGCGGTACATGATCGATGGGACAATGTTTGAGATG TACGACGTCGGCGGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTT TGATAATGTCACGGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACC AGGTTTTGTTCGAGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAG CTCTTTAAAGAAATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCT CCTCTTTCTGAATAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGG ACATCAAGGGCATATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGAC TTTGACTCGGGCGTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGA CCGACCTAATGAGAAGATTATCTACAACCACGTGACTTGCGCGACGGACA CAAAGAATGTGGAAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGC GGGAGTCTCAAGGATAGTGGGTTCATGTAAGGGGTGGAGTTTGGTGATGG AGGCCAGGGAGTG
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Coding sequence (CDS) from alignment at chr4:971539..972901-

>NO04G03580.1 ID=NO04G03580.1|Name=NO04G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr4:971539..972901- (Nannochloropsis oceanica)
ATGGGCAATATATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAA
GATGAGTAAGGAGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGC
AGGAGAAAATCAAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGT
ACTATCTTTAAACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGA
AGACAAGAAAATGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCA
TGCGGATCCTGCTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAGATT
GTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCCCGATACGGACAT
TGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGAAGGACCCCGCTA
TTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATAGTTGAATCTGTC
AGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCCTGACTACCTGGC
ATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCTCGGGCATCGTCA
CGGAGCGGTACATGATCGATGGGACAATGTTTGAGATGTACGACGTCGGC
GGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTTTGATAATGTCAC
GGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACCAGGTTTTGTTCG
AGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAGCTCTTTAAAGAA
ATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCTCCTCTTTCTGAA
TAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGGACATCAAGGGCA
TATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGACTTTGACTCGGGC
GTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGACCGACCTAATGA
GAAGATTATCTACAACCACGTGACTTGCGCGACGGACACAAAGAATGTGG
AAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGCGGGAGTCTCAAG
GATAGTGGGTTCATGTAA
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Synonyms
Publications