NO04G03410.1, NO04G03410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03410.1
Unique NameNO04G03410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr4:936728..938026 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:936728..938026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03410.1 vs.
Match: EWM28782.1 (rna (guanine-9-)-methyltransferase domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 342.0 bits (876), Expect = 2.200e-90
Identity = 182/295 (61.69%), Postives = 222/295 (75.25%), Query Frame = 0
Query:   38 PHPLNPRKRGNDDDSYVVRPSKTRMQGVSKRVAKHLRRQEMWKVKKAAKKEAKKAAREEAKRQQQKDG------VVSGQKDKEIDPVLQQERREHRLIQRREAQEDFVRRCAEGARVVVDCGFDDQMTEKELKSLGQQVMYVYASNKRAPSPCTIYLTELGPSMEKRLSGLAGTQNWHGFVREPRPYVEAFAGEREKLVYLTSDSPNSLTKWDRGAVYIIGGIVDRNRLKRVTYEKALVQGIVTARFPLQEYVTLGSTPVLTVNHVFDILLEFQHTNDWRAAFAKVLPQRKGLNL 327
            P    P K GN    ++ R   +R++ VSK VAK L RQEMWKVKKA KK AK+AAR+E  RQ  + G      + +   + + D +L+++RRE R  QR EAQ  F+RRC EGARVV+DCGFD  MTEKELKSLGQQ+MYVYASNKRA +PCT+++ ELG  +++RLS +AG QNW GF RE RP++E +A ER+KLVYLTSDSPN LT+ D G +Y+IGGIVDRNRLK  TY KAL QGI TARFPL+E+V LGS+PVL VNHVFDILLEFQ+TNDWRA FAKVLP RK + +
Sbjct:   33 PSSSTPVKGGN---LFLFR-KPSRVKDVSKSVAKKLWRQEMWKVKKATKKAAKRAARQETNRQSGEVGQDDNLNLQAATSESKNDQLLRKQRREQRKNQRHEAQMAFLRRCEEGARVVIDCGFDSHMTEKELKSLGQQLMYVYASNKRALAPCTVHIAELGAGIQQRLSCVAGVQNWQGFNRETRPFMETYAAERDKLVYLTSDSPNVLTQLDPGLIYVIGGIVDRNRLKHATYNKALAQGIATARFPLREHVQLGSSPVLAVNHVFDILLEFQYTNDWRATFAKVLPNRKSVKV 323          
The following BLAST results are available for this feature:
BLAST of NO04G03410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28782.12.200e-9061.69rna (guanine-9-)-methyltransferase domain-containi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03410NO04G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03410.1NO04G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03410.1.cds1NO04G03410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03410.1.cds2NO04G03410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03410.1 ID=NO04G03410.1|Name=NO04G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ACAGGTTCCAATTCACGGAAGGATGGAGCAGGAGAAGCCACCTGTGCCTG
CTGGTGGCCCAATAACCACGGACAAGTCTGAGGTGGGTGAGCCCTCATGT
GTGTGTGAGGCAGCCTCGGCTCCTCATCAACCTCCCCACCCTCTCAACCC
TCGGAAAAGAGGCAACGATGATGACTCTTACGTTGTCAGACCGTCCAAAA
CAAGGATGCAGGGCGTATCTAAGAGAGTAGCCAAGCATTTGAGGCGGCAG
GAAATGTGGAAGGTGAAAAAAGCTGCCAAAAAGGAGGCCAAGAAGGCGGC
ACGTGAGGAGGCTAAACGGCAGCAGCAGAAGGATGGTGTAGTTTCAGGCC
AAAAAGATAAAGAAATCGATCCTGTTCTGCAACAAGAGCGACGAGAGCAC
CGTTTAATTCAGAGACGTGAGGCACAGGAGGATTTTGTGCGTCGGTGTGC
AGAGGGCGCTAGAGTAGTGGTTGACTGTGGGTTCGACGATCAAATGACCG
AGAAGGAGCTCAAATCTTTAGGGCAACAAGTGATGTATGTCTACGCATCG
AACAAGCGCGCACCGTCTCCTTGTACCATTTATCTAACGGAGCTGGGGCC
TTCTATGGAAAAACGGTTGTCCGGCTTAGCAGGCACACAAAACTGGCACG
GTTTCGTGCGGGAGCCACGACCCTACGTGGAGGCCTTCGCGGGCGAGCGG
GAGAAGCTTGTGTATCTTACTTCTGACTCTCCAAACAGCTTGACTAAATG
GGACCGAGGCGCAGTTTACATAATCGGCGGCATCGTCGATCGGAACCGGC
TCAAGAGGGTGACCTATGAGAAGGCTCTGGTGCAAGGCATTGTCACGGCT
CGATTTCCTTTGCAGGAGTACGTGACCCTAGGGAGCACGCCGGTGTTGAC
TGTGAATCATGTTTTTGACATTTTGCTCGAGTTCCAGCACACTAACGACT
GGCGCGCTGCTTTTGCCAAGGTCTTACCGCAACGGAAAGGTTTAAACTTG
AGGACATCATCGGAGGCTGGTGGTGGTATGGGGGGCCAGCAGGTGGAGCG
GCAGCAAGAGGAGGGGAAATGGTTGGTGAGAGAGGAGGGAGAAGAGCAAG
CAAGGGAGGAAAAGGGGTAGGAGGTCTGTAGAAGCACTTTTCCAAGGAGT
CATTAAAATTACCGAAATATATC
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protein sequence of NO04G03410.1

>NO04G03410.1-protein ID=NO04G03410.1-protein|Name=NO04G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MEQEKPPVPAGGPITTDKSEVGEPSCVCEAASAPHQPPHPLNPRKRGNDD
DSYVVRPSKTRMQGVSKRVAKHLRRQEMWKVKKAAKKEAKKAAREEAKRQ
QQKDGVVSGQKDKEIDPVLQQERREHRLIQRREAQEDFVRRCAEGARVVV
DCGFDDQMTEKELKSLGQQVMYVYASNKRAPSPCTIYLTELGPSMEKRLS
GLAGTQNWHGFVREPRPYVEAFAGEREKLVYLTSDSPNSLTKWDRGAVYI
IGGIVDRNRLKRVTYEKALVQGIVTARFPLQEYVTLGSTPVLTVNHVFDI
LLEFQHTNDWRAAFAKVLPQRKGLNLRTSSEAGGGMGGQQVERQQEEGKW
LVREEGEEQAREEKG*
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mRNA from alignment at chr4:936728..938026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03410.1 ID=NO04G03410.1|Name=NO04G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at chr4:936728..938026+ (Nannochloropsis oceanica)
ACAGGTTCCAATTCACGGAAGGATGGAGCAGGAGAAGCCACCTGTGCCTG CTGGTGGCCCAATAACCACGGACAAGTCTGAGGTGGGTGAGCCCTCATGT GTGTGTGAGGCAGCCTCGGCTCCTCATCAACCTCCCCACCCTCTCAACCC TCGGAAAAGAGGCAACGATGATGACTCTTACGTTGTCAGACCGTCCAAAA CAAGGATGCAGGGCGTATCTAAGAGAGTAGCCAAGCATTTGAGGCGGCAG GAAATGTGGAAGGTGAAAAAAGCTGCCAAAAAGGAGGCCAAGAAGGCGGC ACGTGAGGAGGCTAAACGGCAGCAGCAGAAGGATGGTGTAGTTTCAGGCC AAAAAGATAAAGAAATCGATCCTGTTCTGCAACAAGAGCGACGAGAGCAC CGTTTAATTCAGAGACGTGAGGCACAGGAGGATTTTGTGCGTCGGTGTGC AGAGGGCGCTAGAGTAGTGGTTGACTGTGGGTTCGACGATCAAATGACCG AGAAGGAGCTCAAATCTTTAGGGCAACAAGTGATGTATGTCTACGCATCG AACAAGCGCGCACCGTCTCCTTGTACCATTTATCTAACGGAGTGAGTAAA CCATAAGATTCATCGTGTTGCAGCACGTTTCCAGTGGAGAAGAAAATCAT ATAGCGTATTTTTCTAAAAGCACGACTCTCACCCTTCCCACCATCCTCCC AACTCAAACGCAAACAGGCTGGGGCCTTCTATGGAAAAACGGTTGTCCGG CTTAGCAGGCACACAAAACTGGCACGGTTTCGTGCGGGAGCCACGACCCT ACGTGGAGGCCTTCGCGGGCGAGCGGGAGAAGCTTGTGTATCTTACTTCT GACTCTCCAAACAGCTTGACTAAATGGGACCGAGGCGCAGTTTACATAAT CGGCGGCATCGTCGATCGGAACCGGCTCAAGAGGGTGACCTATGAGAAGG CTCTGGTGCAAGGCATTGTCACGGCTCGATTTCCTTTGCAGGAGTACGTG ACCCTAGGGAGCACGCCGGTGTTGACTGTGAATCATGTTTTTGACATTTT GCTCGAGTTCCAGCACACTAACGACTGGCGCGCTGCTTTTGCCAAGGTCT TACCGCAACGGAAAGGTTTAAACTTGAGGACATCATCGGAGGCTGGTGGT GGTATGGGGGGCCAGCAGGTGGAGCGGCAGCAAGAGGAGGGGAAATGGTT GGTGAGAGAGGAGGGAGAAGAGCAAGCAAGGGAGGAAAAGGGGTAGGAGG TCTGTAGAAGCACTTTTCCAAGGAGTCATTAAAATTACCGAAATATATC
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Coding sequence (CDS) from alignment at chr4:936728..938026+

>NO04G03410.1 ID=NO04G03410.1|Name=NO04G03410.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr4:936728..938026+ (Nannochloropsis oceanica)
ATGGAGCAGGAGAAGCCACCTGTGCCTGCTGGTGGCCCAATAACCACGGA
CAAGTCTGAGGTGGGTGAGCCCTCATGTGTGTGTGAGGCAGCCTCGGCTC
CTCATCAACCTCCCCACCCTCTCAACCCTCGGAAAAGAGGCAACGATGAT
GACTCTTACGTTGTCAGACCGTCCAAAACAAGGATGCAGGGCGTATCTAA
GAGAGTAGCCAAGCATTTGAGGCGGCAGGAAATGTGGAAGGTGAAAAAAG
CTGCCAAAAAGGAGGCCAAGAAGGCGGCACGTGAGGAGGCTAAACGGCAG
CAGCAGAAGGATGGTGTAGTTTCAGGCCAAAAAGATAAAGAAATCGATCC
TGTTCTGCAACAAGAGCGACGAGAGCACCGTTTAATTCAGAGACGTGAGG
CACAGGAGGATTTTGTGCGTCGGTGTGCAGAGGGCGCTAGAGTAGTGGTT
GACTGTGGGTTCGACGATCAAATGACCGAGAAGGAGCTCAAATCTTTAGG
GCAACAAGTGATGTATGTCTACGCATCGAACAAGCGCGCACCGTCTCCTT
GTACCATTTATCTAACGGAGCTGGGGCCTTCTATGGAAAAACGGTTGTCC
GGCTTAGCAGGCACACAAAACTGGCACGGTTTCGTGCGGGAGCCACGACC
CTACGTGGAGGCCTTCGCGGGCGAGCGGGAGAAGCTTGTGTATCTTACTT
CTGACTCTCCAAACAGCTTGACTAAATGGGACCGAGGCGCAGTTTACATA
ATCGGCGGCATCGTCGATCGGAACCGGCTCAAGAGGGTGACCTATGAGAA
GGCTCTGGTGCAAGGCATTGTCACGGCTCGATTTCCTTTGCAGGAGTACG
TGACCCTAGGGAGCACGCCGGTGTTGACTGTGAATCATGTTTTTGACATT
TTGCTCGAGTTCCAGCACACTAACGACTGGCGCGCTGCTTTTGCCAAGGT
CTTACCGCAACGGAAAGGTTTAAACTTGAGGACATCATCGGAGGCTGGTG
GTGGTATGGGGGGCCAGCAGGTGGAGCGGCAGCAAGAGGAGGGGAAATGG
TTGGTGAGAGAGGAGGGAGAAGAGCAAGCAAGGGAGGAAAAGGGGTAG
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Synonyms
Publications