NO04G03380.1, NO04G03380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03380.1
Unique NameNO04G03380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr4:931413..933034 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:931413..933034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03380.1 vs.
Match: CEM36155.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 303.1 bits (775), Expect = 1.300e-78
Identity = 150/285 (52.63%), Postives = 211/285 (74.04%), Query Frame = 0
Query:  136 SSVKDLDVSDILQKAGRKAIGGGLSGAAASLVQLVTLMWLRTTMQFQYRYGFSFKESLVKLYKEGGLPRFYRGLPVATLQLPLSRFGDVAANAFMLLALDSFDSTRGLPLPVKSIFGSLAAGAFRFMLMPLDAVKTSLQVQGSKGWSQVKARLQEEGVSSLYQGAVAQAVATFVGHWPFFVTFNYMSSVILLPPADA--VFLRLGRNAILGLCSSTVSDMCSNSFRVIKTTKQTSESQITYREALRQVLDQDGVKGLFGRGLQTRLAANALQGMIFSVVWRYLEE 419
            ++ K +DV  ILQK+ ++A+GGGLSG+AAS++Q+ +LMWLRT+M +QY  G     +L  L+ EGG+PRFYRGLP A +Q PLS+FGD AANA +L  LDSF+ST GLPL VK+   S+AAG +R ++ P+D  KT++QV+G+ G  QV  +++E G + LY GA+A + ATFVGH+P+F T+NY+     LPP +     ++L RNA +GLC+S+++D  SNS RVIKTTKQTSE   +YRE +  ++++DGV+GLFGRGL TRL  N +QGM+F+V +R+ EE
Sbjct:   53 ATAKKVDVKTILQKSAKRAVGGGLSGSAASVLQVFSLMWLRTSMNYQYTTGLPLNTTLATLWSEGGVPRFYRGLPFALVQAPLSKFGDTAANAGVLALLDSFESTMGLPLFVKTASASVAAGLWRIVIFPVDTFKTTMQVRGAAGIPQVSDKVKETGPTVLYNGAIAASAATFVGHYPWFFTYNYLQE--HLPPVEPGDTLMKLMRNAFIGLCASSLADSLSNSLRVIKTTKQTSEDSPSYREVVSGIIEKDGVRGLFGRGLATRLLTNGVQGMLFAVAYRFFEE 335          
The following BLAST results are available for this feature:
BLAST of NO04G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM36155.11.300e-7852.63unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03380NO04G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03380.1NO04G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03380.1.cds1NO04G03380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03380.1.cds2NO04G03380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03380.1.cds3NO04G03380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03380.1.cds4NO04G03380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG
TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC
AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT
GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA
ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG
TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC
TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA
CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG
ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG
GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT
GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA
GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC
GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC
TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC
TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC
TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA
TGCCGTCAAGACCTCTTTGCAAGTACAAGGTTCAAAAGGTTGGTCTCAGG
TCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCG
GTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGAC
ATTCAACTACATGTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCT
TTCTGCGATTGGGAAGGAATGCCATTCTAGGCTTGTGCTCCTCCACGGTG
TCGGACATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAAC
ATCCGAATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACC
AAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGCTGGCG
GCCAATGCGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGA
AGAGTCGCAAATTCTGTTTGGGGGGAAATGA
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protein sequence of NO04G03380.1

>NO04G03380.1-protein ID=NO04G03380.1-protein|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MQPKRQVIGLFLWLAGCSSAFKARTKLQSSSHIQRLPSVCTHHHGPQHIL
GHLHQQNFRDKYQIEEKPGDAPFLDLSGPPSSSVPDTFLLWLDLLIPGSC
FALTLVALCLVDTAVMDCWPAPANAAAVGVAITDMSSVKDLDVSDILQKA
GRKAIGGGLSGAAASLVQLVTLMWLRTTMQFQYRYGFSFKESLVKLYKEG
GLPRFYRGLPVATLQLPLSRFGDVAANAFMLLALDSFDSTRGLPLPVKSI
FGSLAAGAFRFMLMPLDAVKTSLQVQGSKGWSQVKARLQEEGVSSLYQGA
VAQAVATFVGHWPFFVTFNYMSSVILLPPADAVFLRLGRNAILGLCSSTV
SDMCSNSFRVIKTTKQTSESQITYREALRQVLDQDGVKGLFGRGLQTRLA
ANALQGMIFSVVWRYLEESQILFGGK*
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mRNA from alignment at chr4:931413..933034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at chr4:931413..933034- (Nannochloropsis oceanica)
ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA TGCCGTCAAGACCTCTTTGCAAGTATGTAACGCAGCCATTCCGTTTCATA TCATAATCTTGGTAGCCCCTTTGTTTTGCTCGGTTCCCCTTCATCTAGCA ATTCTACCAACAATTGGGTCGTCATTTTCCCACAATATTTTCAACCAGGT ACAAGGTTCAAAAGGTTGGTCTCAGGTCAAGGCACGCCTGCAAGAGGAAG GGGTCTCCTCCCTATATCAAGGCGCGGTCGCTCAAGCTGTAGCTACTTTT GTCGGCCATTGGCCCTTTTTTGTGACATTCAACTACATGTCCTCCGTGAT TTTGCTTCCACCCGCCGACGCTGTCTTTCTGCGATTGGGAAGGAATGCCA TTCTAGGTAAAGATGATAAATTTAGAAGTGGACTTTTGCATCTTTTGTTA GCAGCAAATCAAAAGCAAGAGCATTCTTCTTACTACGTACTTTTTTCTTT CATGGACCTACAGGCTTGTGCTCCTCCACGGTGTCGGACATGTGTTCCAA TAGCTTTCGGGTCATCAAAACCACCAAACAAACATCCGAATCGCAAATTA CCTACCGGGAGGCCTTGCGCCAGGTGCTGGACCAAGATGGTGTCAAGGGG TTGTTTGGCCGAGGCTTGCAGACGAGGTGTGGATGCAGGAAAGGATAAGT GGGCTGATGGTCATGTCTGTGCAGGACTCTGCAATCACAATAATTTTCAT CTCCGCAAATACATTCATTTTAATACATGCACAGGCTGGCGGCCAATGCG CTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCGCA AATTCTGTTTGGGGGGAAATGA
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Coding sequence (CDS) from alignment at chr4:931413..933034-

>NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr4:931413..933034- (Nannochloropsis oceanica)
ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG
TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC
AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT
GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA
ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG
TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC
TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA
CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG
ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG
GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT
GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA
GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC
GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC
TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC
TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC
TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA
TGCCGTCAAGACCTCTTTGCAAGTACAAGGTTCAAAAGGTTGGTCTCAGG
TCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCG
GTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGAC
ATTCAACTACATGTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCT
TTCTGCGATTGGGAAGGAATGCCATTCTAGGCTTGTGCTCCTCCACGGTG
TCGGACATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAAC
ATCCGAATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACC
AAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGCTGGCG
GCCAATGCGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGA
AGAGTCGCAAATTCTGTTTGGGGGGAAATGA
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Synonyms
Publications