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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:931413..933034 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03380.1 vs.
Match: CEM36155.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 303.1 bits (775), Expect = 1.300e-78 Identity = 150/285 (52.63%), Postives = 211/285 (74.04%), Query Frame = 0
Query: 136 SSVKDLDVSDILQKAGRKAIGGGLSGAAASLVQLVTLMWLRTTMQFQYRYGFSFKESLVKLYKEGGLPRFYRGLPVATLQLPLSRFGDVAANAFMLLALDSFDSTRGLPLPVKSIFGSLAAGAFRFMLMPLDAVKTSLQVQGSKGWSQVKARLQEEGVSSLYQGAVAQAVATFVGHWPFFVTFNYMSSVILLPPADA--VFLRLGRNAILGLCSSTVSDMCSNSFRVIKTTKQTSESQITYREALRQVLDQDGVKGLFGRGLQTRLAANALQGMIFSVVWRYLEE 419
++ K +DV ILQK+ ++A+GGGLSG+AAS++Q+ +LMWLRT+M +QY G +L L+ EGG+PRFYRGLP A +Q PLS+FGD AANA +L LDSF+ST GLPL VK+ S+AAG +R ++ P+D KT++QV+G+ G QV +++E G + LY GA+A + ATFVGH+P+F T+NY+ LPP + ++L RNA +GLC+S+++D SNS RVIKTTKQTSE +YRE + ++++DGV+GLFGRGL TRL N +QGM+F+V +R+ EE
Sbjct: 53 ATAKKVDVKTILQKSAKRAVGGGLSGSAASVLQVFSLMWLRTSMNYQYTTGLPLNTTLATLWSEGGVPRFYRGLPFALVQAPLSKFGDTAANAGVLALLDSFESTMGLPLFVKTASASVAAGLWRIVIFPVDTFKTTMQVRGAAGIPQVSDKVKETGPTVLYNGAIAASAATFVGHYPWFFTYNYLQE--HLPPVEPGDTLMKLMRNAFIGLCASSLADSLSNSLRVIKTTKQTSEDSPSYREVVSGIIEKDGVRGLFGRGLATRLLTNGVQGMLFAVAYRFFEE 335
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA TGCCGTCAAGACCTCTTTGCAAGTACAAGGTTCAAAAGGTTGGTCTCAGG TCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCG GTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGAC ATTCAACTACATGTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCT TTCTGCGATTGGGAAGGAATGCCATTCTAGGCTTGTGCTCCTCCACGGTG TCGGACATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAAC ATCCGAATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACC AAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGCTGGCG GCCAATGCGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGA AGAGTCGCAAATTCTGTTTGGGGGGAAATGA back to topprotein sequence of NO04G03380.1 >NO04G03380.1-protein ID=NO04G03380.1-protein|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp MQPKRQVIGLFLWLAGCSSAFKARTKLQSSSHIQRLPSVCTHHHGPQHIL GHLHQQNFRDKYQIEEKPGDAPFLDLSGPPSSSVPDTFLLWLDLLIPGSC FALTLVALCLVDTAVMDCWPAPANAAAVGVAITDMSSVKDLDVSDILQKA GRKAIGGGLSGAAASLVQLVTLMWLRTTMQFQYRYGFSFKESLVKLYKEG GLPRFYRGLPVATLQLPLSRFGDVAANAFMLLALDSFDSTRGLPLPVKSI FGSLAAGAFRFMLMPLDAVKTSLQVQGSKGWSQVKARLQEEGVSSLYQGA VAQAVATFVGHWPFFVTFNYMSSVILLPPADAVFLRLGRNAILGLCSSTV SDMCSNSFRVIKTTKQTSESQITYREALRQVLDQDGVKGLFGRGLQTRLA ANALQGMIFSVVWRYLEESQILFGGK* back to topmRNA from alignment at chr4:931413..933034- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at chr4:931413..933034- (Nannochloropsis oceanica) ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG
TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC
AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT
GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA
ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG
TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC
TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA
CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG
ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG
GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT
GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA
GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC
GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC
TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC
TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC
TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA
TGCCGTCAAGACCTCTTTGCAAGTATGTAACGCAGCCATTCCGTTTCATA
TCATAATCTTGGTAGCCCCTTTGTTTTGCTCGGTTCCCCTTCATCTAGCA
ATTCTACCAACAATTGGGTCGTCATTTTCCCACAATATTTTCAACCAGGT
ACAAGGTTCAAAAGGTTGGTCTCAGGTCAAGGCACGCCTGCAAGAGGAAG
GGGTCTCCTCCCTATATCAAGGCGCGGTCGCTCAAGCTGTAGCTACTTTT
GTCGGCCATTGGCCCTTTTTTGTGACATTCAACTACATGTCCTCCGTGAT
TTTGCTTCCACCCGCCGACGCTGTCTTTCTGCGATTGGGAAGGAATGCCA
TTCTAGGTAAAGATGATAAATTTAGAAGTGGACTTTTGCATCTTTTGTTA
GCAGCAAATCAAAAGCAAGAGCATTCTTCTTACTACGTACTTTTTTCTTT
CATGGACCTACAGGCTTGTGCTCCTCCACGGTGTCGGACATGTGTTCCAA
TAGCTTTCGGGTCATCAAAACCACCAAACAAACATCCGAATCGCAAATTA
CCTACCGGGAGGCCTTGCGCCAGGTGCTGGACCAAGATGGTGTCAAGGGG
TTGTTTGGCCGAGGCTTGCAGACGAGGTGTGGATGCAGGAAAGGATAAGT
GGGCTGATGGTCATGTCTGTGCAGGACTCTGCAATCACAATAATTTTCAT
CTCCGCAAATACATTCATTTTAATACATGCACAGGCTGGCGGCCAATGCG
CTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGAAGAGTCGCA
AATTCTGTTTGGGGGGAAATGA back to topCoding sequence (CDS) from alignment at chr4:931413..933034- >NO04G03380.1 ID=NO04G03380.1|Name=NO04G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr4:931413..933034- (Nannochloropsis oceanica) ATGCAACCTAAGCGGCAAGTGATTGGCCTCTTTTTGTGGTTGGCGGGCTG TAGCAGTGCGTTCAAGGCCCGTACCAAGCTCCAAAGCAGCTCCCACATCC AGCGCCTTCCCTCAGTCTGCACACATCATCACGGACCTCAACATATACTT GGACACCTCCATCAACAAAACTTCCGCGACAAGTACCAAATCGAGGAGAA ACCCGGCGATGCTCCTTTCCTAGACCTCTCCGGTCCCCCTTCCTCATCGG TCCCCGACACTTTTCTTTTATGGCTTGATTTGCTGATACCTGGTTCTTGC TTCGCCTTGACCCTCGTCGCATTATGCCTAGTGGACACGGCCGTCATGGA CTGTTGGCCGGCACCCGCTAATGCCGCGGCGGTGGGCGTGGCAATTACAG ATATGTCCTCAGTCAAAGATCTTGACGTTTCCGATATTTTGCAAAAAGCG GGCAGAAAGGCGATAGGGGGCGGCTTGTCAGGAGCAGCAGCGTCCCTTGT GCAGCTCGTGACGTTAATGTGGCTGAGGACGACGATGCAATTCCAGTATA GATATGGCTTCTCCTTCAAGGAATCATTGGTGAAACTTTACAAAGAGGGC GGACTTCCTCGATTTTATCGAGGCTTGCCGGTGGCGACGTTGCAACTCCC TCTCTCTCGTTTTGGTGATGTGGCAGCCAATGCCTTTATGCTTCTTGCCC TGGATTCGTTCGACTCGACCCGCGGTCTGCCCCTACCAGTCAAGAGTATC TTTGGCAGTCTCGCGGCTGGGGCTTTCCGCTTTATGCTTATGCCATTGGA TGCCGTCAAGACCTCTTTGCAAGTACAAGGTTCAAAAGGTTGGTCTCAGG TCAAGGCACGCCTGCAAGAGGAAGGGGTCTCCTCCCTATATCAAGGCGCG GTCGCTCAAGCTGTAGCTACTTTTGTCGGCCATTGGCCCTTTTTTGTGAC ATTCAACTACATGTCCTCCGTGATTTTGCTTCCACCCGCCGACGCTGTCT TTCTGCGATTGGGAAGGAATGCCATTCTAGGCTTGTGCTCCTCCACGGTG TCGGACATGTGTTCCAATAGCTTTCGGGTCATCAAAACCACCAAACAAAC ATCCGAATCGCAAATTACCTACCGGGAGGCCTTGCGCCAGGTGCTGGACC AAGATGGTGTCAAGGGGTTGTTTGGCCGAGGCTTGCAGACGAGGCTGGCG GCCAATGCGCTGCAGGGGATGATATTTTCGGTTGTTTGGAGGTATCTAGA AGAGTCGCAAATTCTGTTTGGGGGGAAATGA back to top
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