NO04G03340.2, NO04G03340.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03340.2
Unique NameNO04G03340.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1243
Alignment locationchr4:921820..923502 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:921820..923502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03340.2 vs.
Match: EWM28756.1 (peroxisomal -dienoyl- reductase [Nannochloropsis gaditana])

HSP 1 Score: 448.7 bits (1153), Expect = 1.500e-122
Identity = 229/315 (72.70%), Postives = 257/315 (81.59%), Query Frame = 0 
Query:    8 SPFLKNILEDRVALVTGGGSGIGFEVARQLGLHGAKVRLPLTPSGKQRHAKRVYILPDTLSRVIQVVIMGRRGPFLEKAVDLLKQDSIEATWFQGDVRQPEDAENAVQKAVNTFGSLSILVNAAAGNFLVTAEDLSTKGFKTVMDIDTVGSFNMSRSAFPELKAAAGGGVVVNISATLHYGATWFQAHASAAKAAVDSLTRSLGLEWGEFGVRVVGIAPGPIAETPGMTKLAPGDDSDAIGDLVAEIIPLGRMGAKADIALAAVFLCSSAGGFITGETLVVDGGHWLFKPQMLPRDMVAAMSRGIEDKSRAMAPT 323
            SPF+ +IL  RVALVTGGGSGIGFEVARQLGLHGAK+                             +IMGRR  FLEKAV LL Q++++ATW QGDVRQ EDA+ AV+KAV+ FGSLSILVNAAAGNFLV  EDLSTKGF+TVM+IDTVGSFNMSR+AF  LK AA GG+++NISATLHYGATW+Q HASAAKAAVDSLTRSLGLEWG FG+RVVGIAPGPIA+TPGM KLAP DDS A+ +LVAE+IPLGRMG K DIALAAVFLCSSAGGFITGETLVVDGGHWLFKPQMLPR++V+ MSR +E KSRAM P+
Sbjct:    7 SPFVTSILAGRVALVTGGGSGIGFEVARQLGLHGAKI-----------------------------IIMGRRKSFLEKAVGLLAQEAVQATWVQGDVRQSEDADKAVEKAVHDFGSLSILVNAAAGNFLVAGEDLSTKGFRTVMEIDTVGSFNMSRAAFKALKVAAEGGLIINISATLHYGATWYQTHASAAKAAVDSLTRSLGLEWGSFGIRVVGIAPGPIADTPGMAKLAPADDSSAVDELVAEMIPLGRMGTKTDIALAAVFLCSSAGGFITGETLVVDGGHWLFKPQMLPRELVSDMSRRVESKSRAMTPS 292
The following BLAST results are available for this feature:
BLAST of NO04G03340.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28756.11.500e-12272.70peroxisomal -dienoyl- reductase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03340NO04G03340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03340.2NO04G03340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03340.2.cds1NO04G03340.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03340.2.cds2NO04G03340.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03340.2.cds3NO04G03340.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03340.2.cds4NO04G03340.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03340.2.cds5NO04G03340.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03340.2 ID=NO04G03340.2|Name=NO04G03340.2|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
AATCGAACCACAGAAGGCAGTTGATTCGGCCACCAGCATAACCCCGCGTC
CAGCAAAAAGTACATCAAAATAAACGCATCGACCTTCCCAGCTTCTTTAC
CAAGCAGGCCGTATTACTCATTGCAAGAGGCAAGACATAAACAGGCCGAT
GCCTCCCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACA
GGGTCGCATTGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCT
CGGCAACTGGGTCTTCATGGCGCCAAGGTACGTCTGCCTTTGACCCCTTC
AGGAAAACAAAGGCACGCAAAACGCGTTTACATACTCCCCGACACTCTTT
CCCGTGTCATTCAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAG
AAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCACATGGTTCCA
AGGCGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGCAAAAAGCAG
TCAATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCAGCGGGCAAC
TTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAAGACGGTGAT
GGATATTGACACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCCCTG
AACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACG
CTGCACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGC
GGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTG
GAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCAGGC
ATGACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCTGGT
GGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTC
TAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGGGAG
ACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCC
GAGGGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTG
CGATGGCGCCCACGAAGAGTAAGCTGTGAAGTGAAAGTGAAGCTAATGGA
GAATCGTATTCGTTGGTCGTGGAAATGGCGTGCGTGGGAGAAGTAAAAAA
AGAGATAGAGTAACAAGAAAGCACCTTAACTCACACTATCCGA
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protein sequence of NO04G03340.2

>NO04G03340.2-protein ID=NO04G03340.2-protein|Name=NO04G03340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MPPAPPPSPFLKNILEDRVALVTGGGSGIGFEVARQLGLHGAKVRLPLTP
SGKQRHAKRVYILPDTLSRVIQVVIMGRRGPFLEKAVDLLKQDSIEATWF
QGDVRQPEDAENAVQKAVNTFGSLSILVNAAAGNFLVTAEDLSTKGFKTV
MDIDTVGSFNMSRSAFPELKAAAGGGVVVNISATLHYGATWFQAHASAAK
AAVDSLTRSLGLEWGEFGVRVVGIAPGPIAETPGMTKLAPGDDSDAIGDL
VAEIIPLGRMGAKADIALAAVFLCSSAGGFITGETLVVDGGHWLFKPQML
PRDMVAAMSRGIEDKSRAMAPTKSKL*
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mRNA from alignment at chr4:921820..923502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03340.2 ID=NO04G03340.2|Name=NO04G03340.2|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at chr4:921820..923502+ (Nannochloropsis oceanica)
AATCGAACCACAGAAGGCAGTTGATTCGGCCACCAGCATAACCCCGCGTC
CAGCAAAAAGTACATCAAAATAAACGCATCGACCTTCCCAGCTTCTTTAC
CAAGCAGGCCGTATTACTCATTGCAAGAGGCAAGACATAAACAGGCCGAT
GCCTCCCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACA
GGTGAGCGGGAGGAGTATGAAGTCGTTGTCCAGGACGTCATACAATGAAT
TGCGCCAGCCACCTACACCTATGCAACCACTACCGCAATCAGGGTCGCAT
TGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGCAACTG
GGTCTTCATGGCGCCAAGGTACGTCTGCCTTTGACCCCTTCAGGAAAACA
AAGGCACGCAAAACGCGTTTACATACTCCCCGACACTCTTTCCCGTGTCA
TTCAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAGAAGGCCGTG
GATCTCCTGAAGCAGGACAGCATCGAAGCCACATGTACGTTTAACGTTTG
ATCAGAGAGCTTGGACATCAAGGGGCTAGTCGCTCACTGACGATGACAAC
ATCAATGCCATACTTACAGGGTTCCAAGGCGACGTTCGACAGCCTGAGGA
TGCCGAGAATGCCGTGCAAAAAGCAGTCAATACATTCGGGTTAGCAGAGA
ATTTCTTTGTGTTCGTGTGTGTATGTCACAATCGTGGAAGCTTCGTGCTT
CGAGTTTCTGATCCTGTGTTACTCTTTTCTGCCCGCACAAACAAACAGAT
CTTTGAGCATTTTGGTGAACGCGGCAGCGGGCAACTTTTTGGTGACGGCC
GAAGATCTAAGCACGAAGGGCTTCAAGGTAGGGCTTCTCAAAGGATTGCT
TTAAACTTTTGGTAATGAAGTGCTGGATTGCGTTGCGTGTCTTAGATGAG
CCACTCGTAAGTGCAGAAACCTTGTGTCCTTACACAACTGACTCACATCC
TCCCTCATGCACTACCATACCCCTATGACCAGACGGTGATGGATATTGAC
ACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCCCTGAACTGAAGGC
TGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACGCTGCACTACG
GCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGCGGCGGTAGAC
AGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTGGAGTAAGAGT
GGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCAGGCATGACTAAGC
TGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCTGGTGGCGGAGATT
ATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTCTAGCGGCCGT
GTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGGGAGACGCTGGTGG
TGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCCGAGGGATATG
GTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTGCGATGGCGCC
CACGAAGAGTAAGCTGTGAAGTGAAAGTGAAGCTAATGGAGAATCGTATT
CGTTGGTCGTGGAAATGGCGTGCGTGGGAGAAGTAAAAAAAGAGATAGAG
TAACAAGAAAGCACCTTAACTCACACTATCCGA
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Coding sequence (CDS) from alignment at chr4:921820..923502+

>NO04G03340.2 ID=NO04G03340.2|Name=NO04G03340.2|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr4:921820..923502+ (Nannochloropsis oceanica)
ATGCCTCCCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGA
CAGGGTCGCATTGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAG
CTCGGCAACTGGGTCTTCATGGCGCCAAGGTACGTCTGCCTTTGACCCCT
TCAGGAAAACAAAGGCACGCAAAACGCGTTTACATACTCCCCGACACTCT
TTCCCGTGTCATTCAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAG
AGAAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCACATGGTTC
CAAGGCGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGCAAAAAGC
AGTCAATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCAGCGGGCA
ACTTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAAGACGGTG
ATGGATATTGACACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCCC
TGAACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCCA
CGCTGCACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAAG
GCGGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGTT
TGGAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCAG
GCATGACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCTG
GTGGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTGC
TCTAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGGG
AGACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCTG
CCGAGGGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCCG
TGCGATGGCGCCCACGAAGAGTAAGCTGTGA
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Synonyms
Publications