NO04G03230.1, NO04G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03230.1
Unique NameNO04G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr4:900411..901973 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:900411..901973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03230.1 vs.
Match: EWM28811.1 (pin domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 6.800e-97
Identity = 197/268 (73.51%), Postives = 224/268 (83.58%), Query Frame = 0 
Query:   90 SRDGVVRYGTKGRKKHRTS-RCRK-SDDGEYCEDS----DECEAPRVSSQINIPVRRQIAFVKQMKKLMKAEERPKE-VAKKVRRKKDSAQREAISGDYARFDQTMCSTYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAELRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQEYFID 351
            +R  V  + ++  KK RTS R RK S D E  ++     D+ +APRVSSQINIPVRRQIAFVKQMKK++K EERP   V KK R+KK   QREAI+ DYA F  ++C+TYLLVDGYNVINNW+KMIKARS+AGMPSARQALLEQLRYI+HSRRWKVVVAYDEHTPG+ELR+MEGDVDEV+TG  DSADSYIERRAVELCK     RVKVATDDRTIQVVS+ASGAE MSTSSLI+EIYLARRELLFQRD +DWR+ K+FDDAQEYF+D
Sbjct:   79 TRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD 346
The following BLAST results are available for this feature:
BLAST of NO04G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28811.16.800e-9773.51pin domain containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03230NO04G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03230.1NO04G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03230.1.cds1NO04G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03230.1.cds2NO04G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03230.1 ID=NO04G03230.1|Name=NO04G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ACAGCTTCCCTGCCACTTCACACCTCCCGCACCTGCAACGCGACGGAAAC
ACCACGTCGTTTTCCCCGATCGACGCAATCGATTTCTATTTTGCCTTACT
TCTGCAATTCAATGGGTCAAAGCGAGCCGTGAAAGGCAGCCAAGAGATGC
GTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTCTG
CCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAATG
TTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGGGG
CTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGTGC
CGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCGCT
TCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGGTA
GAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAATAC
TGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATCAA
TATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCTCA
TGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCAAA
AAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTTGA
CCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGATAA
ACAATTGGTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGC
GCACGGCAGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACG
CTGGAAAGTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGC
GGGTGATGGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCG
GCGGATTCTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGC
GGGTCCTCGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGA
GCCTAGCTTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAG
ATTTACCTGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTG
GCGGTCAAAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGG
CCTAGGCAAGGGAGGCAGGAGTGCAGGAGTCTGGGGATATACAGTCCAGC
TCACAAGAACGTAGTTGTAGAAAAATATGGCAATGTATCATATCAATCAT
AGAATAGAAGCAATGAGACG
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protein sequence of NO04G03230.1

>NO04G03230.1-protein ID=NO04G03230.1-protein|Name=NO04G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRWQHYSGDRQRVPLLRLPLTVLLLTLLGLCPLKCFAAAATSRSRIGDYR
GASLAFTPVFTASVNVWCRSIQRSSQLAVCSTCPLLACNSRDGVVRYGTK
GRKKHRTSRCRKSDDGEYCEDSDECEAPRVSSQINIPVRRQIAFVKQMKK
LMKAEERPKEVAKKVRRKKDSAQREAISGDYARFDQTMCSTYLLVDGYNV
INNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAE
LRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQV
VSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQEYFID
*
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mRNA from alignment at chr4:900411..901973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03230.1 ID=NO04G03230.1|Name=NO04G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr4:900411..901973- (Nannochloropsis oceanica)
ACAGCTTCCCTGCCACTTCACACCTCCCGCACCTGCAACGCGACGGAAAC
ACCACGTCGTTTTCCCCGATCGACGCAATCGATTTCTATTTTGCCTTACT
TCTGCAATTCAATGGGTCAAAGCGAGCCGTGAAAGGCAGCCAAGAGATGC
GTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTCTG
CCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAATG
TTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGGGG
CTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGTGC
CGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCGCT
TCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGGTA
GAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAATAC
TGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATCAA
TATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCTCA
TGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCAAA
AAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTTGA
CCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGATAA
AGTAAGTTTTTCTCCGATTAGATAAATATGCTTGTCTGGAGGACCTCTGC
GCATGTATGTATACCCCCGTCAGTGTGTGTCTGGCCTTGATTATCATAAC
TTGTCAATGTTTCAATGGCCTTTTGTTGAAAGTATGAGGTAAGTGGGTGT
TTCATCTTGGCGTGTATTTTTTTTCACGTAATATATTTCCTCGGATCGGT
CTTTCACTCATTCTTGTTTCTCTCCGATTATATCATATACACAGCAATTG
GTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGCGCACGGC
AGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACGCTGGAAA
GTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGCGGGTGAT
GGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCGGCGGATT
CTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGCGGGTCCT
CGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGAGCCTAGC
TTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAGATTTACC
TGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTGGCGGTCA
AAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGGCCTAGGC
AAGGGAGGCAGGAGTGCAGGAGTCTGGGGATATACAGTCCAGCTCACAAG
AACGTAGTTGTAGAAAAATATGGCAATGTATCATATCAATCATAGAATAG
AAGCAATGAGACG
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Coding sequence (CDS) from alignment at chr4:900411..901973-

>NO04G03230.1 ID=NO04G03230.1|Name=NO04G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr4:900411..901973- (Nannochloropsis oceanica)
ATGCGTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCG
TCTGCCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCA
AATGTTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGG
GGGGCTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATG
GTGCCGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTC
CGCTTCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAG
GGTAGAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGA
ATACTGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAA
TCAATATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAG
CTCATGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCG
CAAAAAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTT
TTGACCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTG
ATAAACAATTGGTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCC
AAGCGCACGGCAGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCC
GACGCTGGAAAGTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAG
CTGCGGGTGATGGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGA
CTCGGCGGATTCTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGT
CGGCGGGTCCTCGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTA
GTGAGCCTAGCTTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAA
AGAGATTTACCTGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAG
ACTGGCGGTCAAAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGAT
TAG
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Synonyms
Publications