NO04G03120.1, NO04G03120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03120.1
Unique NameNO04G03120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr4:854264..854956 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:854264..854956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03120.1 vs.
Match: EWM22623.1 (phospholipid-transporting atpase [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 0
Query:    5 VADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQL-TSGASVDIEAGLARLYKAV 93
            VAD +ERD+++VG TAIEDKLQ+GV DTIADL  GGIK  VLTG K+ETAINI YSC++L     LL+L  +G    I   L +L  A+
Sbjct:  661 VADEIERDLVVVGTTAIEDKLQEGVPDTIADLLDGGIKVWVLTGDKMETAINIGYSCRLLSSRMTLLKLKDTGDPATIRRHLKKLLNAL 749          
The following BLAST results are available for this feature:
BLAST of NO04G03120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22623.11.100e-1557.30phospholipid-transporting atpase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03120NO04G03120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03120.1NO04G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03120.1.cds1NO04G03120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03120.1 ID=NO04G03120.1|Name=NO04G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGATGAGCAAGGTTGCAGACAACTTGGAGAGGGACATGATCATTGTGGG
GCTAACGGCCATAGAGGACAAGCTCCAGGACGGCGTATCCGACACGATTG
CCGATTTGGCCACGGGCGGCATCAAGTTCTGTGTACTGACAGGTGTCAAG
CTGGAGACCGCCATCAACATTGATTACTCCTGCAAGGTGCTCCGAGAAGA
TCAGCTTTTGCTGCAGCTTACTTCGGGCGCCTCGGTTGATATCGAGGCGG
GCCTGGCACGTCTGTACAAGGCCGTGACTGACAAGAAGGGGATGAGCGCC
GAGTTCTACGAAGCCAAGACCAAGCCAAGCAGACGGCCGGCCATTCAGAG
CTGTTCCAATCACCGGCATCGCGCCAAGGATGTGGCGTCGGCGTGGGACG
TCATGCTTAAGCACTATCCCAACTTGCCCACGTTGTTGAATGCAGCCGCC
TTGCACAATCATAACAGGTCCATATCGGGCGTTTATTTGTCTCCATCCCG
GCGGCGCTTGTCACAAGCTTCCTTCTCTATTAGCCTAGGTCCTGTCGTGC
CTGCGGCGCCAGCTATCATCCCCAACAACCGTCCTATTCACGTTCGCTTC
ACCCAGGCAGCGGAGAGCATAATGGTGGGCAAGAAACATTCTCCACAGCG
TCCTCATCCTCAGTATGAACTGGCGCCTCTTGTTCGAGCTTAA
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protein sequence of NO04G03120.1

>NO04G03120.1-protein ID=NO04G03120.1-protein|Name=NO04G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MMSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVK
LETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSA
EFYEAKTKPSRRPAIQSCSNHRHRAKDVASAWDVMLKHYPNLPTLLNAAA
LHNHNRSISGVYLSPSRRRLSQASFSISLGPVVPAAPAIIPNNRPIHVRF
TQAAESIMVGKKHSPQRPHPQYELAPLVRA*
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mRNA from alignment at chr4:854264..854956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03120.1 ID=NO04G03120.1|Name=NO04G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at chr4:854264..854956+ (Nannochloropsis oceanica)
ATGATGAGCAAGGTTGCAGACAACTTGGAGAGGGACATGATCATTGTGGG GCTAACGGCCATAGAGGACAAGCTCCAGGACGGCGTATCCGACACGATTG CCGATTTGGCCACGGGCGGCATCAAGTTCTGTGTACTGACAGGTGTCAAG CTGGAGACCGCCATCAACATTGATTACTCCTGCAAGGTGCTCCGAGAAGA TCAGCTTTTGCTGCAGCTTACTTCGGGCGCCTCGGTTGATATCGAGGCGG GCCTGGCACGTCTGTACAAGGCCGTGACTGACAAGAAGGGGATGAGCGCC GAGTTCTACGAAGCCAAGACCAAGCCAAGCAGACGGCCGGCCATTCAGAG CTGTTCCAATCACCGGCATCGCGCCAAGGATGTGGCGTCGGCGTGGGACG TCATGCTTAAGCACTATCCCAACTTGCCCACGTTGTTGAATGCAGCCGCC TTGCACAATCATAACAGGTCCATATCGGGCGTTTATTTGTCTCCATCCCG GCGGCGCTTGTCACAAGCTTCCTTCTCTATTAGCCTAGGTCCTGTCGTGC CTGCGGCGCCAGCTATCATCCCCAACAACCGTCCTATTCACGTTCGCTTC ACCCAGGCAGCGGAGAGCATAATGGTGGGCAAGAAACATTCTCCACAGCG TCCTCATCCTCAGTATGAACTGGCGCCTCTTGTTCGAGCTTAA
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Coding sequence (CDS) from alignment at chr4:854264..854956+

>NO04G03120.1 ID=NO04G03120.1|Name=NO04G03120.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr4:854264..854956+ (Nannochloropsis oceanica)
ATGATGAGCAAGGTTGCAGACAACTTGGAGAGGGACATGATCATTGTGGG
GCTAACGGCCATAGAGGACAAGCTCCAGGACGGCGTATCCGACACGATTG
CCGATTTGGCCACGGGCGGCATCAAGTTCTGTGTACTGACAGGTGTCAAG
CTGGAGACCGCCATCAACATTGATTACTCCTGCAAGGTGCTCCGAGAAGA
TCAGCTTTTGCTGCAGCTTACTTCGGGCGCCTCGGTTGATATCGAGGCGG
GCCTGGCACGTCTGTACAAGGCCGTGACTGACAAGAAGGGGATGAGCGCC
GAGTTCTACGAAGCCAAGACCAAGCCAAGCAGACGGCCGGCCATTCAGAG
CTGTTCCAATCACCGGCATCGCGCCAAGGATGTGGCGTCGGCGTGGGACG
TCATGCTTAAGCACTATCCCAACTTGCCCACGTTGTTGAATGCAGCCGCC
TTGCACAATCATAACAGGTCCATATCGGGCGTTTATTTGTCTCCATCCCG
GCGGCGCTTGTCACAAGCTTCCTTCTCTATTAGCCTAGGTCCTGTCGTGC
CTGCGGCGCCAGCTATCATCCCCAACAACCGTCCTATTCACGTTCGCTTC
ACCCAGGCAGCGGAGAGCATAATGGTGGGCAAGAAACATTCTCCACAGCG
TCCTCATCCTCAGTATGAACTGGCGCCTCTTGTTCGAGCTTAA
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Synonyms
Publications